Wall clock time and date at job start Mon Mar 30 2020 01:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47303 * 338.23025 * 3 2 1 5 5 C 1.37102 * 120.00091 * 90.00032 * 4 3 2 6 6 H 1.07998 * 119.99961 * 305.18537 * 5 4 3 7 7 C 1.38945 * 119.99867 * 125.18571 * 5 4 3 8 8 N 1.31410 * 120.00134 * 343.92109 * 7 5 4 9 9 Si 1.86799 * 120.00010 * 163.92772 * 7 5 4 10 10 H 1.48497 * 109.47507 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.46812 * 299.99803 * 9 7 5 12 12 H 1.48504 * 109.47333 * 59.99458 * 9 7 5 13 13 C 1.34777 * 120.00259 * 270.00432 * 4 3 2 14 14 O 1.21293 * 119.99695 * 353.95270 * 13 4 3 15 15 C 1.50703 * 120.00435 * 173.95628 * 13 4 3 16 16 H 1.08998 * 109.67579 * 50.14874 * 15 13 4 17 17 C 1.53359 * 109.68649 * 170.66852 * 15 13 4 18 18 C 1.53097 * 109.51393 * 169.67591 * 17 15 13 19 19 C 1.53368 * 109.51166 * 289.73041 * 18 17 15 20 20 C 1.50832 * 108.37590 * 49.94654 * 19 18 17 21 21 N 1.34325 * 128.03308 * 163.41857 * 20 19 18 22 22 H 0.97006 * 126.09260 * 0.10178 * 21 20 19 23 23 N 1.40290 * 107.82126 * 180.09868 * 21 20 19 24 24 C 1.31080 * 108.26691 * 359.93619 * 23 21 20 25 25 C 1.35746 * 124.12237 * 343.41758 * 20 19 18 26 26 H 4.40643 * 5.51408 * 180.02562 * 4 1 2 27 27 H 1.09000 * 109.46917 * 218.23059 * 3 2 1 28 28 H 1.08998 * 109.47094 * 98.23561 * 3 2 1 29 29 H 0.96996 * 120.00111 * 354.38456 * 8 7 5 30 30 H 1.09007 * 109.46409 * 289.69146 * 17 15 13 31 31 H 1.09002 * 109.46072 * 49.66709 * 17 15 13 32 32 H 1.09000 * 109.47048 * 49.74531 * 18 17 15 33 33 H 1.09001 * 109.46554 * 169.72180 * 18 17 15 34 34 H 1.08994 * 109.68036 * 169.66423 * 19 18 17 35 35 H 1.08994 * 109.68054 * 290.22721 * 19 18 17 36 36 H 1.07998 * 125.96236 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2818 0.5122 5 6 3.3640 -2.3223 -0.3507 6 1 2.5779 -2.6604 -1.0095 7 6 4.6074 -2.9417 -0.3776 8 7 5.6463 -2.3540 0.1721 9 14 4.8024 -4.6098 -1.1954 10 1 6.2166 -5.0505 -1.0901 11 1 3.9239 -5.5981 -0.5195 12 1 4.4218 -4.5068 -2.6271 13 6 3.3596 -1.4389 1.8318 14 8 3.2630 -0.4897 2.5807 15 6 3.7310 -2.7939 2.3770 16 1 4.5510 -3.2122 1.7933 17 6 4.1564 -2.6615 3.8444 18 6 4.2840 -4.0541 4.4675 19 6 2.8902 -4.6743 4.6256 20 6 2.1623 -4.5495 3.3105 21 7 1.0639 -5.2089 2.9067 22 1 0.5747 -5.8717 3.4189 23 7 0.7501 -4.7682 1.6123 24 6 1.6371 -3.8707 1.2576 25 6 2.5373 -3.7135 2.3089 26 1 -1.0498 -0.0004 0.0000 27 1 3.0090 0.8081 0.6360 28 1 3.0093 0.1480 -1.0170 29 1 5.5643 -1.4539 0.5242 30 1 5.1172 -2.1496 3.8993 31 1 3.4072 -2.0871 4.3893 32 1 4.8919 -4.6871 3.8211 33 1 4.7582 -3.9724 5.4456 34 1 2.9849 -5.7263 4.8944 35 1 2.3387 -4.1445 5.4022 36 1 1.6649 -3.3445 0.3148 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281420881.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:39 Heat of formation + Delta-G solvation = 75.830191 kcal Electronic energy + Delta-G solvation = -21988.137335 eV Core-core repulsion = 18860.722946 eV Total energy + Delta-G solvation = -3127.414390 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.51534 -40.63297 -37.41261 -36.75789 -34.88409 -33.26905 -32.81055 -30.63516 -30.04171 -28.30655 -26.54703 -24.67749 -23.10121 -22.34093 -21.62239 -20.00352 -19.36322 -18.85097 -18.04926 -17.52415 -16.78331 -16.46611 -15.89984 -15.52714 -15.21602 -15.01824 -14.73223 -14.48981 -14.48238 -14.14900 -13.88522 -13.64105 -13.23157 -13.00663 -12.45648 -12.01859 -11.95013 -11.93398 -11.75081 -11.64298 -11.48918 -11.41781 -11.10367 -10.62892 -10.50908 -10.25905 -9.70549 -9.07080 -8.66233 -6.29883 0.97347 1.55652 1.58227 1.67452 1.82420 1.89758 1.91889 2.00784 2.15112 2.46818 3.01376 3.11646 3.58964 3.74669 3.91296 4.00923 4.09970 4.32755 4.42450 4.54983 4.62786 4.67892 4.70697 4.77038 4.90151 4.99162 5.06279 5.16101 5.21167 5.34707 5.43310 5.52483 5.66681 5.80601 6.08478 6.27239 6.56334 6.67743 6.83689 7.11005 7.40009 7.86139 8.56092 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.013250 B = 0.010448 C = 0.008883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.629176 B = 2679.394329 C = 3151.244549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.221 4.221 3 C 0.203 3.797 4 N -0.467 5.467 5 C -0.413 4.413 6 H 0.074 0.926 7 C 0.000 4.000 8 N -0.885 5.885 9 Si 1.099 2.901 10 H -0.278 1.278 11 H -0.274 1.274 12 H -0.263 1.263 13 C 0.503 3.497 14 O -0.628 6.628 15 C -0.025 4.025 16 H 0.106 0.894 17 C -0.100 4.100 18 C -0.105 4.105 19 C -0.047 4.047 20 C 0.088 3.912 21 N -0.463 5.463 22 H 0.450 0.550 23 N -0.336 5.336 24 C 0.058 3.942 25 C -0.233 4.233 26 H 0.251 0.749 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.260 0.740 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.553 -6.920 6.055 10.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.222 4.222 3 C 0.081 3.919 4 N -0.187 5.187 5 C -0.541 4.541 6 H 0.091 0.909 7 C -0.205 4.205 8 N -0.519 5.519 9 Si 0.919 3.081 10 H -0.203 1.203 11 H -0.199 1.199 12 H -0.188 1.188 13 C 0.295 3.705 14 O -0.515 6.515 15 C -0.047 4.047 16 H 0.123 0.877 17 C -0.138 4.138 18 C -0.143 4.143 19 C -0.086 4.086 20 C -0.043 4.043 21 N -0.172 5.172 22 H 0.296 0.704 23 N -0.160 5.160 24 C -0.126 4.126 25 C -0.245 4.245 26 H 0.268 0.732 27 H 0.092 0.908 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.134 0.866 35 H 0.119 0.881 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -4.544 -8.270 5.712 11.031 hybrid contribution -0.687 2.061 0.162 2.178 sum -5.231 -6.210 5.874 10.021 Atomic orbital electron populations 1.25611 0.96518 0.99059 1.00598 1.24111 0.95693 1.01567 1.00805 1.18428 0.84312 0.88920 1.00217 1.43556 1.59792 1.10406 1.04970 1.20024 0.99331 1.12310 1.22391 0.90851 1.27444 0.90500 1.06676 0.95851 1.70814 1.31249 1.14298 1.35501 0.83115 0.76800 0.71483 0.76673 1.20293 1.19928 1.18792 1.21206 0.76796 0.90565 0.81959 1.90458 1.58304 1.43771 1.58973 1.19769 0.96779 0.90534 0.97616 0.87682 1.21424 1.00480 0.98436 0.93445 1.21548 0.96298 0.94202 1.02249 1.20517 0.94452 1.04027 0.89565 1.21357 0.90166 0.94675 0.98124 1.45881 1.22782 1.35300 1.13268 0.70378 1.77366 1.24754 1.18470 0.95389 1.24474 0.91964 0.95360 1.00806 1.19584 1.02540 1.06203 0.96152 0.73234 0.90757 0.88400 0.92936 0.93034 0.92771 0.91770 0.87676 0.86590 0.88116 0.79783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.23 19.25 74.32 1.43 -5.80 16 2 C -0.22 -9.44 13.67 31.12 0.43 -9.02 16 3 C 0.20 9.33 5.90 84.57 0.50 9.83 16 4 N -0.47 -23.41 1.91 -645.42 -1.23 -24.64 16 5 C -0.41 -20.47 5.70 84.04 0.48 -19.99 16 6 H 0.07 3.64 6.81 -2.91 -0.02 3.62 16 7 C 0.00 0.00 3.52 84.93 0.30 0.30 16 8 N -0.89 -47.23 12.01 21.66 0.26 -46.97 16 9 Si 1.10 44.92 29.95 68.60 2.05 46.98 16 10 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 12 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 13 C 0.50 26.04 5.55 87.66 0.49 26.52 16 14 O -0.63 -35.20 15.33 -3.07 -0.05 -35.25 16 15 C -0.02 -1.14 2.05 -12.12 -0.02 -1.17 16 16 H 0.11 5.24 4.69 -2.39 -0.01 5.23 16 17 C -0.10 -3.82 4.76 30.75 0.15 -3.68 16 18 C -0.11 -2.83 5.90 30.75 0.18 -2.65 16 19 C -0.05 -1.08 6.30 30.01 0.19 -0.89 16 20 C 0.09 2.90 7.08 41.64 0.29 3.20 16 21 N -0.46 -14.30 7.34 -47.98 -0.35 -14.66 16 22 H 0.45 9.59 8.96 -213.19 -1.91 7.67 16 23 N -0.34 -13.34 12.71 -57.27 -0.73 -14.07 16 24 C 0.06 2.55 10.59 85.06 0.90 3.45 16 25 C -0.23 -9.86 5.37 -20.14 -0.11 -9.97 16 26 H 0.25 6.40 7.80 -4.43 -0.03 6.36 16 27 H 0.07 3.50 7.35 -2.39 -0.02 3.48 16 28 H 0.10 4.19 8.04 -2.39 -0.02 4.18 16 29 H 0.26 14.73 7.38 -92.71 -0.68 14.04 16 30 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.05 2.17 7.60 -2.39 -0.02 2.16 16 32 H 0.06 1.81 8.11 -2.39 -0.02 1.79 16 33 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.19 8.80 4.55 -2.91 -0.01 8.79 16 Total: -1.00 -68.01 300.09 4.45 -63.56 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: -0.71 Total: 34.90 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: 5.20 Total: -9.86 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -2.05 Total: -100.33 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.05 Total: -35.25 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.05 Total: 46.98 kcal Total: -68.01 4.45 -63.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281420881.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.388 kcal (2) G-P(sol) polarization free energy of solvation -68.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds