Wall clock time and date at job start Mon Mar 30 2020 01:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46509 * 109.47177 * 225.94830 * 3 2 1 5 5 C 1.36710 * 119.99755 * 97.87786 * 4 3 2 6 6 H 1.08003 * 119.99324 * 160.84696 * 5 4 3 7 7 C 1.39108 * 120.00431 * 340.85185 * 5 4 3 8 8 N 1.31333 * 119.99495 * 341.77632 * 7 5 4 9 9 Si 1.86791 * 120.00134 * 161.78126 * 7 5 4 10 10 H 1.48505 * 109.47311 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47459 * 119.99831 * 9 7 5 12 12 H 1.48505 * 109.47208 * 239.99646 * 9 7 5 13 13 C 1.34775 * 119.99840 * 277.60642 * 4 3 2 14 14 O 1.21793 * 120.00310 * 180.02562 * 13 4 3 15 15 C 1.41666 * 120.00098 * 359.97438 * 13 4 3 16 16 C 1.35422 * 120.00323 * 179.97438 * 15 13 4 17 17 C 1.46348 * 120.00587 * 179.03962 * 16 15 13 18 18 C 1.38474 * 126.51930 * 5.60124 * 17 16 15 19 19 C 1.39153 * 107.63721 * 180.02562 * 18 17 16 20 20 N 1.30994 * 108.84297 * 359.97438 * 19 18 17 21 21 N 1.36825 * 126.52678 * 185.29035 * 17 16 15 22 22 C 1.46501 * 126.15416 * 359.96148 * 21 17 16 23 23 C 1.53006 * 109.47015 * 94.48268 * 22 21 17 24 24 H 4.40646 * 5.51490 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.47242 * 105.95238 * 3 2 1 26 26 H 1.08994 * 109.47151 * 345.94822 * 3 2 1 27 27 H 0.97000 * 119.99667 * 180.02562 * 8 7 5 28 28 H 1.08003 * 119.99973 * 0.02562 * 15 13 4 29 29 H 1.08000 * 119.99415 * 359.04260 * 16 15 13 30 30 H 1.08001 * 126.18128 * 359.97438 * 18 17 16 31 31 H 1.08004 * 125.58030 * 180.02562 * 19 18 17 32 32 H 1.09004 * 109.47514 * 214.48372 * 22 21 17 33 33 H 1.09005 * 109.47112 * 334.48714 * 22 21 17 34 34 H 1.09001 * 109.47201 * 60.00596 * 23 22 21 35 35 H 1.09002 * 109.46767 * 180.02562 * 23 22 21 36 36 H 1.08998 * 109.47024 * 299.99643 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9613 0.9928 5 6 3.5150 0.5290 2.2325 6 1 4.1497 1.1485 2.8488 7 6 3.0853 -0.7086 2.7001 8 7 2.0543 -1.2998 2.1411 9 14 3.9745 -1.5296 4.1229 10 1 5.0948 -0.6643 4.5719 11 1 3.0260 -1.7352 5.2470 12 1 4.5100 -2.8422 3.6808 13 6 3.2123 2.2704 0.6819 14 8 3.6184 3.0690 1.5070 15 6 2.8234 2.7174 -0.6048 16 6 2.9016 4.0328 -0.9170 17 6 2.5198 4.4919 -2.2531 18 6 1.9619 3.7229 -3.2605 19 6 1.7577 4.5516 -4.3596 20 7 2.1614 5.7608 -4.0585 21 7 2.6407 5.7639 -2.7427 22 6 3.1778 6.9203 -2.0211 23 6 4.6653 7.0765 -2.3433 24 1 -1.0502 0.0000 -0.0003 25 1 3.0092 0.2833 -0.9881 26 1 3.0098 -0.9960 0.2495 27 1 1.7544 -2.1627 2.4674 28 1 2.4637 2.0093 -1.3367 29 1 3.2459 4.7431 -0.1799 30 1 1.7283 2.6700 -3.2038 31 1 1.3347 4.2477 -5.3058 32 1 2.6433 7.8197 -2.3270 33 1 3.0521 6.7699 -0.9489 34 1 4.7910 7.2269 -3.4156 35 1 5.0650 7.9366 -1.8061 36 1 5.1997 6.1771 -2.0374 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281566423.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:17 Heat of formation + Delta-G solvation = 129.888561 kcal Electronic energy + Delta-G solvation = -20137.905893 eV Core-core repulsion = 17012.835650 eV Total energy + Delta-G solvation = -3125.070243 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.78033 -38.88884 -35.41979 -34.41462 -33.36497 -32.21664 -31.32541 -29.53635 -28.72543 -26.62537 -25.31753 -23.86799 -22.92183 -20.84825 -19.60190 -18.14000 -17.77892 -17.33012 -16.60863 -15.84354 -15.06568 -14.90359 -14.62683 -14.34612 -14.15330 -13.96523 -13.32075 -12.92224 -12.71457 -12.59547 -12.44495 -12.36267 -12.10673 -11.69199 -11.35643 -11.21207 -11.06229 -10.63368 -10.50435 -10.44745 -10.13071 -9.45579 -9.44171 -8.99600 -8.78605 -8.53126 -8.02216 -7.87560 -6.53544 -3.96382 1.06313 2.52241 2.58965 3.05751 3.16880 3.20568 3.23545 3.68038 3.95228 4.06496 4.33091 4.53689 4.76072 4.94236 4.98386 5.05270 5.14141 5.16984 5.39198 5.41408 5.51082 5.61271 5.81600 5.89686 5.96727 6.00178 6.16423 6.27641 6.65391 6.70803 6.77666 6.81311 6.95286 7.18160 7.36849 7.85921 7.93704 8.28869 8.72490 8.99708 9.17810 9.81547 10.45844 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026586 B = 0.004503 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.916704 B = 6217.034010 C = 7045.674624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.120 4.120 3 C 0.225 3.775 4 N -0.417 5.417 5 C -0.300 4.300 6 H 0.110 0.890 7 C 0.029 3.971 8 N -0.850 5.850 9 Si 0.928 3.072 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.456 3.544 14 O -0.596 6.596 15 C -0.122 4.122 16 C -0.085 4.085 17 C 0.126 3.874 18 C -0.265 4.265 19 C 0.043 3.957 20 N -0.304 5.304 21 N -0.369 5.369 22 C 0.128 3.872 23 C -0.169 4.169 24 H 0.201 0.799 25 H 0.067 0.933 26 H 0.115 0.885 27 H 0.273 0.727 28 H 0.121 0.879 29 H 0.133 0.867 30 H 0.149 0.851 31 H 0.180 0.820 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.446 6.177 -9.387 11.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.121 4.121 3 C 0.102 3.898 4 N -0.133 5.133 5 C -0.429 4.429 6 H 0.127 0.873 7 C -0.177 4.177 8 N -0.486 5.486 9 Si 0.753 3.247 10 H -0.189 1.189 11 H -0.206 1.206 12 H -0.203 1.203 13 C 0.250 3.750 14 O -0.484 6.484 15 C -0.146 4.146 16 C -0.108 4.108 17 C 0.000 4.000 18 C -0.294 4.294 19 C -0.140 4.140 20 N -0.126 5.126 21 N -0.153 5.153 22 C 0.007 3.993 23 C -0.227 4.227 24 H 0.218 0.782 25 H 0.084 0.916 26 H 0.133 0.867 27 H 0.083 0.917 28 H 0.138 0.862 29 H 0.151 0.849 30 H 0.166 0.834 31 H 0.197 0.803 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.752 7.667 -9.303 12.078 hybrid contribution -0.267 -1.531 0.970 1.832 sum 0.485 6.136 -8.333 10.360 Atomic orbital electron populations 1.24322 0.95409 1.03312 1.04082 1.23103 0.94273 0.97821 0.96912 1.18417 0.84425 0.96535 0.90435 1.43775 1.52469 1.04640 1.12391 1.19874 1.27598 1.02034 0.93345 0.87263 1.25467 0.95285 0.97688 0.99243 1.70040 1.20466 1.16691 1.41446 0.85836 0.79601 0.78990 0.80224 1.18932 1.20602 1.20348 1.16688 0.87226 0.82581 0.88539 1.90658 1.52915 1.52895 1.51913 1.22316 0.98822 0.95951 0.97505 1.21178 1.01481 0.96694 0.91480 1.20289 0.99769 0.85042 0.94887 1.21815 1.12773 1.01192 0.93576 1.23558 1.00041 0.90690 0.99749 1.77198 1.19593 1.21881 0.93964 1.49051 1.48889 1.07199 1.10119 1.21671 0.94874 0.86561 0.96187 1.22178 0.94740 1.03048 1.02765 0.78233 0.91552 0.86693 0.91667 0.86156 0.84924 0.83360 0.80288 0.89051 0.88563 0.91816 0.90598 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.06 19.25 29.55 0.57 -4.49 16 2 C -0.12 -2.59 11.17 -37.13 -0.41 -3.00 16 3 C 0.22 4.79 4.78 -6.83 -0.03 4.76 16 4 N -0.42 -10.28 2.60 -121.18 -0.31 -10.59 16 5 C -0.30 -7.94 9.31 -15.05 -0.14 -8.08 16 6 H 0.11 3.04 7.38 -52.48 -0.39 2.65 16 7 C 0.03 0.73 4.93 -17.44 -0.09 0.64 16 8 N -0.85 -21.21 9.44 55.50 0.52 -20.69 16 9 Si 0.93 19.46 29.59 -169.99 -5.03 14.43 16 10 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 12 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 13 C 0.46 11.04 7.32 -14.95 -0.11 10.93 16 14 O -0.60 -16.31 15.76 5.11 0.08 -16.23 16 15 C -0.12 -2.38 8.40 -39.28 -0.33 -2.71 16 16 C -0.08 -1.50 9.26 -37.33 -0.35 -1.85 16 17 C 0.13 2.04 6.91 -82.29 -0.57 1.47 16 18 C -0.26 -3.93 10.21 -39.16 -0.40 -4.33 16 19 C 0.04 0.59 11.96 -17.57 -0.21 0.38 16 20 N -0.30 -4.66 12.54 30.50 0.38 -4.27 16 21 N -0.37 -5.51 3.67 -57.32 -0.21 -5.72 16 22 C 0.13 1.48 7.04 -4.04 -0.03 1.45 16 23 C -0.17 -1.73 10.24 37.16 0.38 -1.35 16 24 H 0.20 3.25 7.80 -54.08 -0.42 2.83 16 25 H 0.07 1.17 6.54 -51.93 -0.34 0.84 16 26 H 0.12 2.55 6.31 -51.93 -0.33 2.23 16 27 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 28 H 0.12 2.10 4.92 -52.48 -0.26 1.84 16 29 H 0.13 2.39 6.76 -52.49 -0.35 2.04 16 30 H 0.15 2.00 7.29 -52.49 -0.38 1.61 16 31 H 0.18 1.78 8.06 -52.48 -0.42 1.35 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 1.04 7.23 -51.93 -0.38 0.67 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 318.87 15.07 4.81 4.81 Total: -1.00 -31.46 318.87 -5.57 -37.03 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -4.10 Total: 7.43 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -1.72 Total: -6.20 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.38 Total: -41.27 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.08 Total: -16.23 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.46 -5.57 -37.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281566423.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.920 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds