Wall clock time and date at job start Mon Mar 30 2020 01:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46509 * 109.47177 * 225.94830 * 3 2 1 5 5 C 1.36710 * 119.99755 * 97.87786 * 4 3 2 6 6 H 1.08003 * 119.99324 * 160.84696 * 5 4 3 7 7 C 1.39108 * 120.00431 * 340.85185 * 5 4 3 8 8 N 1.31333 * 119.99495 * 341.77632 * 7 5 4 9 9 Si 1.86791 * 120.00134 * 161.78126 * 7 5 4 10 10 H 1.48505 * 109.47311 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47459 * 119.99831 * 9 7 5 12 12 H 1.48505 * 109.47208 * 239.99646 * 9 7 5 13 13 C 1.34775 * 119.99840 * 277.60642 * 4 3 2 14 14 O 1.21793 * 120.00310 * 180.02562 * 13 4 3 15 15 C 1.41666 * 120.00098 * 359.97438 * 13 4 3 16 16 C 1.35422 * 120.00323 * 179.97438 * 15 13 4 17 17 C 1.46348 * 120.00587 * 179.03962 * 16 15 13 18 18 C 1.38474 * 126.51930 * 5.60124 * 17 16 15 19 19 C 1.39153 * 107.63721 * 180.02562 * 18 17 16 20 20 N 1.30994 * 108.84297 * 359.97438 * 19 18 17 21 21 N 1.36825 * 126.52678 * 185.29035 * 17 16 15 22 22 C 1.46501 * 126.15416 * 359.96148 * 21 17 16 23 23 C 1.53006 * 109.47015 * 94.48268 * 22 21 17 24 24 H 4.40646 * 5.51490 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.47242 * 105.95238 * 3 2 1 26 26 H 1.08994 * 109.47151 * 345.94822 * 3 2 1 27 27 H 0.97000 * 119.99667 * 180.02562 * 8 7 5 28 28 H 1.08003 * 119.99973 * 0.02562 * 15 13 4 29 29 H 1.08000 * 119.99415 * 359.04260 * 16 15 13 30 30 H 1.08001 * 126.18128 * 359.97438 * 18 17 16 31 31 H 1.08004 * 125.58030 * 180.02562 * 19 18 17 32 32 H 1.09004 * 109.47514 * 214.48372 * 22 21 17 33 33 H 1.09005 * 109.47112 * 334.48714 * 22 21 17 34 34 H 1.09001 * 109.47201 * 60.00596 * 23 22 21 35 35 H 1.09002 * 109.46767 * 180.02562 * 23 22 21 36 36 H 1.08998 * 109.47024 * 299.99643 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9613 0.9928 5 6 3.5150 0.5290 2.2325 6 1 4.1497 1.1485 2.8488 7 6 3.0853 -0.7086 2.7001 8 7 2.0543 -1.2998 2.1411 9 14 3.9745 -1.5296 4.1229 10 1 5.0948 -0.6643 4.5719 11 1 3.0260 -1.7352 5.2470 12 1 4.5100 -2.8422 3.6808 13 6 3.2123 2.2704 0.6819 14 8 3.6184 3.0690 1.5070 15 6 2.8234 2.7174 -0.6048 16 6 2.9016 4.0328 -0.9170 17 6 2.5198 4.4919 -2.2531 18 6 1.9619 3.7229 -3.2605 19 6 1.7577 4.5516 -4.3596 20 7 2.1614 5.7608 -4.0585 21 7 2.6407 5.7639 -2.7427 22 6 3.1778 6.9203 -2.0211 23 6 4.6653 7.0765 -2.3433 24 1 -1.0502 0.0000 -0.0003 25 1 3.0092 0.2833 -0.9881 26 1 3.0098 -0.9960 0.2495 27 1 1.7544 -2.1627 2.4674 28 1 2.4637 2.0093 -1.3367 29 1 3.2459 4.7431 -0.1799 30 1 1.7283 2.6700 -3.2038 31 1 1.3347 4.2477 -5.3058 32 1 2.6433 7.8197 -2.3270 33 1 3.0521 6.7699 -0.9489 34 1 4.7910 7.2269 -3.4156 35 1 5.0650 7.9366 -1.8061 36 1 5.1997 6.1771 -2.0374 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281566423.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:16 Heat of formation + Delta-G solvation = 111.469936 kcal Electronic energy + Delta-G solvation = -20138.704585 eV Core-core repulsion = 17012.835650 eV Total energy + Delta-G solvation = -3125.868934 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.94779 -40.68989 -37.23988 -35.41185 -34.89778 -33.96624 -33.05626 -30.65572 -29.99519 -28.33070 -27.02262 -24.99656 -24.33170 -22.06909 -20.93617 -19.79084 -19.37134 -18.80179 -18.28561 -17.33929 -16.57375 -16.17813 -16.02092 -15.84109 -15.75481 -15.13288 -14.75038 -14.31750 -14.25784 -14.11566 -13.93411 -13.47413 -13.44570 -13.02430 -12.81881 -12.61804 -12.47612 -12.25680 -12.12600 -11.67309 -11.52132 -11.23908 -11.10275 -10.68949 -10.41699 -9.95579 -9.85513 -9.21334 -8.39209 -5.94130 -0.34065 1.24208 1.43816 1.44114 1.50070 1.57489 1.93798 2.05423 2.30726 2.38549 2.56566 3.12772 3.19891 3.58514 3.66552 3.88799 3.97425 4.06993 4.14304 4.30584 4.32525 4.52444 4.66280 4.74397 4.76879 4.90489 4.92178 4.98055 5.14748 5.22464 5.37710 5.41708 5.42595 5.74192 6.00747 6.04318 6.41780 6.72113 7.09441 7.13721 7.34008 7.95359 8.58876 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026586 B = 0.004503 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.916704 B = 6217.034010 C = 7045.674624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.158 4.158 3 C 0.227 3.773 4 N -0.431 5.431 5 C -0.344 4.344 6 H 0.079 0.921 7 C 0.004 3.996 8 N -0.863 5.863 9 Si 0.989 3.011 10 H -0.273 1.273 11 H -0.279 1.279 12 H -0.262 1.262 13 C 0.452 3.548 14 O -0.642 6.642 15 C -0.147 4.147 16 C -0.043 4.043 17 C 0.095 3.905 18 C -0.255 4.255 19 C 0.045 3.955 20 N -0.316 5.316 21 N -0.369 5.369 22 C 0.117 3.883 23 C -0.162 4.162 24 H 0.234 0.766 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.277 0.723 28 H 0.143 0.857 29 H 0.125 0.875 30 H 0.163 0.837 31 H 0.218 0.782 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.466 6.374 -11.154 12.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.159 4.159 3 C 0.105 3.895 4 N -0.146 5.146 5 C -0.472 4.472 6 H 0.097 0.903 7 C -0.201 4.201 8 N -0.499 5.499 9 Si 0.813 3.187 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.187 1.187 13 C 0.247 3.753 14 O -0.533 6.533 15 C -0.170 4.170 16 C -0.067 4.067 17 C -0.031 4.031 18 C -0.284 4.284 19 C -0.138 4.138 20 N -0.138 5.138 21 N -0.154 5.154 22 C -0.003 4.003 23 C -0.220 4.220 24 H 0.250 0.750 25 H 0.117 0.883 26 H 0.118 0.882 27 H 0.087 0.913 28 H 0.161 0.839 29 H 0.143 0.857 30 H 0.181 0.819 31 H 0.234 0.766 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.171 7.850 -11.096 13.593 hybrid contribution -0.051 -1.377 1.348 1.928 sum -0.221 6.473 -9.748 11.704 Atomic orbital electron populations 1.25172 0.96361 1.01690 1.02523 1.23365 0.94869 0.99313 0.98371 1.18465 0.84785 0.95153 0.91047 1.43884 1.52887 1.05307 1.12475 1.19717 1.29573 1.03183 0.94773 0.90272 1.26100 0.95496 0.97293 1.01205 1.70115 1.20736 1.16842 1.42244 0.84943 0.78174 0.78239 0.77377 1.19788 1.20433 1.18696 1.17369 0.85943 0.82295 0.89713 1.90607 1.54837 1.54111 1.53739 1.22043 1.01870 0.96992 0.96135 1.21214 0.97560 0.95879 0.91998 1.20177 1.02093 0.86336 0.94539 1.22175 1.10979 1.01981 0.93298 1.24176 0.99145 0.89692 1.00805 1.77189 1.19590 1.22938 0.94076 1.49365 1.48463 1.07418 1.10134 1.21992 0.95769 0.86336 0.96232 1.22127 0.93724 1.03309 1.02800 0.74984 0.88273 0.88174 0.91313 0.83897 0.85742 0.81899 0.76578 0.87229 0.88286 0.92172 0.88011 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.17 19.25 74.32 1.43 -7.73 16 2 C -0.16 -6.72 11.17 31.12 0.35 -6.37 16 3 C 0.23 9.75 4.78 84.57 0.40 10.16 16 4 N -0.43 -21.87 2.60 -655.48 -1.70 -23.58 16 5 C -0.34 -19.03 9.31 84.14 0.78 -18.24 16 6 H 0.08 4.71 7.38 -2.91 -0.02 4.69 16 7 C 0.00 0.20 4.93 84.98 0.42 0.62 16 8 N -0.86 -43.34 9.44 21.69 0.20 -43.14 16 9 Si 0.99 40.59 29.59 68.60 2.03 42.62 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 12 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 13 C 0.45 22.57 7.32 85.09 0.62 23.19 16 14 O -0.64 -36.77 15.76 -4.65 -0.07 -36.84 16 15 C -0.15 -5.72 8.40 22.47 0.19 -5.53 16 16 C -0.04 -1.51 9.26 23.73 0.22 -1.29 16 17 C 0.09 2.89 6.91 40.53 0.28 3.17 16 18 C -0.26 -6.84 10.21 22.55 0.23 -6.61 16 19 C 0.04 1.07 11.96 85.04 1.02 2.08 16 20 N -0.32 -8.79 12.54 -57.41 -0.72 -9.51 16 21 N -0.37 -10.32 3.67 -335.25 -1.23 -11.55 16 22 C 0.12 2.50 7.04 86.38 0.61 3.11 16 23 C -0.16 -3.07 10.24 71.98 0.74 -2.33 16 24 H 0.23 6.87 7.80 -4.41 -0.03 6.84 16 25 H 0.10 3.45 6.54 -2.39 -0.02 3.43 16 26 H 0.10 4.53 6.31 -2.39 -0.02 4.52 16 27 H 0.28 13.02 8.31 -92.71 -0.77 12.25 16 28 H 0.14 4.80 4.92 -2.91 -0.01 4.79 16 29 H 0.12 4.54 6.76 -2.91 -0.02 4.52 16 30 H 0.16 3.83 7.29 -2.91 -0.02 3.81 16 31 H 0.22 3.31 8.06 -2.91 -0.02 3.29 16 32 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.10 2.04 7.23 -2.38 -0.02 2.03 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -69.67 318.87 6.89 -62.78 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 1.09 Total: 25.00 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 7.29 Total: -5.78 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -3.45 Total: -87.77 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.07 Total: -36.84 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -69.67 6.89 -62.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281566423.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.252 kcal (2) G-P(sol) polarization free energy of solvation -69.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds