Wall clock time and date at job start Mon Mar 30 2020 01:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47430 * 2 1 4 4 C 1.50699 * 109.46861 * 240.00289 * 2 1 3 5 5 H 1.08007 * 120.00125 * 240.00148 * 4 2 1 6 6 C 1.37877 * 120.00364 * 59.99934 * 4 2 1 7 7 N 1.31518 * 119.99643 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00197 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46666 * 90.00172 * 8 6 4 10 10 H 1.48492 * 109.47171 * 210.00005 * 8 6 4 11 11 H 1.48497 * 109.47125 * 330.00551 * 8 6 4 12 12 N 1.46496 * 109.47273 * 120.00364 * 2 1 3 13 13 C 1.34783 * 119.99932 * 274.99962 * 12 2 1 14 14 O 1.21582 * 119.99827 * 359.97438 * 13 12 2 15 15 C 1.47521 * 119.99991 * 179.97438 * 13 12 2 16 16 C 1.39437 * 120.25054 * 321.18213 * 15 13 12 17 17 C 1.38287 * 120.28402 * 179.97438 * 16 15 13 18 18 C 1.37878 * 120.72607 * 359.97438 * 17 16 15 19 19 C 1.39673 * 120.10831 * 359.97438 * 18 17 16 20 20 N 1.35858 * 133.51108 * 180.02562 * 19 18 17 21 21 C 1.30090 * 109.53497 * 179.74190 * 20 19 18 22 22 N 1.36123 * 110.05277 * 0.39394 * 21 20 19 23 23 C 1.46496 * 126.31496 * 179.87416 * 22 21 20 24 24 C 1.37523 * 107.37962 * 359.61192 * 22 21 20 25 25 H 1.09010 * 109.46638 * 300.00033 * 1 2 3 26 26 H 1.09000 * 109.47235 * 59.99343 * 1 2 3 27 27 H 1.08997 * 109.47430 * 180.02562 * 1 2 3 28 28 H 0.96998 * 119.99267 * 179.97438 * 7 6 4 29 29 H 0.97004 * 120.00128 * 94.99331 * 12 2 1 30 30 H 1.07998 * 119.85709 * 359.97438 * 16 15 13 31 31 H 1.08001 * 119.63505 * 179.97438 * 17 16 15 32 32 H 1.08008 * 119.94591 * 179.97438 * 18 17 16 33 33 H 1.08001 * 124.97490 * 180.23770 * 21 20 19 34 34 H 1.08991 * 109.47422 * 263.93530 * 23 22 21 35 35 H 1.09005 * 109.46906 * 23.93446 * 23 22 21 36 36 H 1.08998 * 109.47410 * 143.92964 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.3446 -2.1614 -4.4124 10 1 2.4871 -0.1401 -5.1120 11 1 3.6306 -1.7566 -3.7121 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8584 1.1614 2.4116 15 6 2.6383 -0.7139 3.5617 16 6 2.2399 -2.0233 3.8284 17 6 2.7004 -2.6762 4.9571 18 6 3.5580 -2.0470 5.8343 19 6 3.9730 -0.7360 5.5894 20 7 4.7899 0.1254 6.2500 21 6 4.8581 1.2481 5.5964 22 7 4.0836 1.1853 4.4787 23 6 3.8990 2.2505 3.4901 24 6 3.5110 -0.0646 4.4455 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 0.7095 1.1619 -3.4844 29 1 2.2490 -1.6319 1.1525 30 1 1.5688 -2.5297 3.1505 31 1 2.3847 -3.6902 5.1536 32 1 3.9096 -2.5686 6.7122 33 1 5.4417 2.1055 5.8977 34 1 2.9901 2.8062 3.7201 35 1 4.7546 2.9253 3.5191 36 1 3.8153 1.8126 2.4955 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334335861.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:47 Heat of formation + Delta-G solvation = 37.100543 kcal Electronic energy + Delta-G solvation = -20696.442897 eV Core-core repulsion = 17567.349064 eV Total energy + Delta-G solvation = -3129.093833 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.11833 -39.01894 -37.00690 -34.97047 -33.86884 -32.50177 -30.76152 -29.45911 -28.59122 -26.77316 -25.32408 -23.92309 -22.10580 -22.07138 -20.38666 -19.38103 -17.69606 -17.08998 -16.55830 -15.95406 -15.76323 -15.31882 -15.06468 -14.52870 -14.37686 -13.69226 -13.51735 -13.26825 -13.01203 -12.53446 -12.27597 -11.99670 -11.79711 -11.75356 -11.42162 -11.14410 -10.95745 -10.80004 -10.38225 -10.30088 -10.23125 -10.17578 -9.15233 -9.11040 -8.62288 -8.34119 -8.10076 -7.90645 -6.18848 -4.28386 0.78230 1.55794 2.67740 2.76492 3.20432 3.27596 3.29603 3.39787 3.91233 4.04152 4.26862 4.32442 4.62827 4.92514 5.02740 5.13314 5.16340 5.37009 5.44575 5.53115 5.60244 5.72631 5.91956 6.15606 6.40501 6.44962 6.53571 6.75128 6.83126 6.89586 7.06800 7.17306 7.33658 7.47699 7.62406 7.83039 7.86286 8.07068 8.54897 8.68987 8.97824 9.39346 10.87044 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025950 B = 0.004761 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.749634 B = 5879.854699 C = 6264.897007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.697 5.697 13 C 0.542 3.458 14 O -0.553 6.553 15 C -0.111 4.111 16 C -0.073 4.073 17 C -0.135 4.135 18 C -0.052 4.052 19 C 0.035 3.965 20 N -0.500 5.500 21 C 0.254 3.746 22 N -0.480 5.480 23 C 0.084 3.916 24 C 0.089 3.911 25 H 0.015 0.985 26 H 0.091 0.909 27 H 0.027 0.973 28 H 0.265 0.735 29 H 0.391 0.609 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.130 0.870 33 H 0.213 0.787 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.138 -2.726 12.769 14.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.343 5.343 13 C 0.327 3.673 14 O -0.434 6.434 15 C -0.117 4.117 16 C -0.094 4.094 17 C -0.155 4.155 18 C -0.071 4.071 19 C -0.084 4.084 20 N -0.220 5.220 21 C -0.032 4.032 22 N -0.168 5.168 23 C -0.057 4.057 24 C -0.023 4.023 25 H 0.034 0.966 26 H 0.109 0.891 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.224 0.776 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.230 0.770 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.231 -1.813 13.246 14.356 hybrid contribution -0.028 -0.558 -1.664 1.755 sum 5.203 -2.371 11.582 12.916 Atomic orbital electron populations 1.22080 0.98252 0.99255 1.00976 1.18787 0.91150 0.93913 0.79842 0.93353 1.21207 1.32581 1.13313 0.90256 0.92033 1.24880 0.94746 0.94917 0.99067 1.69900 1.35829 1.22369 1.23958 0.86440 0.79222 0.79303 0.82118 1.20464 1.21042 1.19837 1.46558 1.63851 1.13696 1.10214 1.18160 0.78934 0.86832 0.83328 1.90719 1.51821 1.15554 1.85337 1.19162 1.00896 0.95014 0.96647 1.21148 0.98761 0.91897 0.97572 1.20794 0.99334 1.00402 0.95004 1.20337 0.96353 0.91124 0.99319 1.19014 1.00246 0.95726 0.93368 1.70480 1.20819 1.01212 1.29469 1.25349 0.95271 0.98447 0.84102 1.45271 1.37696 1.11923 1.21908 1.22263 1.02524 0.88563 0.92397 1.18622 0.99179 0.86417 0.98087 0.96596 0.89067 0.95363 0.92529 0.77612 0.84635 0.84893 0.85253 0.77047 0.89722 0.90471 0.88607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.26 37.16 0.34 -3.22 16 2 C 0.26 6.51 2.56 -69.09 -0.18 6.33 16 3 H 0.05 1.36 7.58 -51.93 -0.39 0.96 16 4 C -0.54 -13.81 8.73 -34.44 -0.30 -14.11 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.25 11.32 55.43 0.63 -23.63 16 8 Si 0.90 20.23 29.54 -169.99 -5.02 15.20 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 12 N -0.70 -14.23 4.99 -55.99 -0.28 -14.51 16 13 C 0.54 10.80 6.64 -12.47 -0.08 10.72 16 14 O -0.55 -12.36 12.80 5.29 0.07 -12.30 16 15 C -0.11 -1.89 5.77 -104.95 -0.61 -2.49 16 16 C -0.07 -1.01 9.33 -39.12 -0.36 -1.38 16 17 C -0.13 -1.59 9.99 -39.70 -0.40 -1.99 16 18 C -0.05 -0.67 10.09 -39.18 -0.40 -1.07 16 19 C 0.03 0.55 7.22 -84.71 -0.61 -0.06 16 20 N -0.50 -7.60 11.28 -12.05 -0.14 -7.74 16 21 C 0.25 3.24 12.50 -89.72 -1.12 2.12 16 22 N -0.48 -7.19 3.19 -122.94 -0.39 -7.58 16 23 C 0.08 1.16 9.34 59.84 0.56 1.72 16 24 C 0.09 1.50 6.74 -83.76 -0.56 0.94 16 25 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 26 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.39 7.04 7.90 -40.82 -0.32 6.71 16 30 H 0.14 1.64 7.78 -52.49 -0.41 1.23 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 33 H 0.21 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.08 1.24 7.70 -51.93 -0.40 0.84 16 35 H 0.08 0.76 8.13 -51.93 -0.42 0.34 16 36 H 0.10 1.63 6.00 -51.93 -0.31 1.32 16 LS Contribution 305.56 15.07 4.60 4.60 Total: -1.00 -31.45 305.56 -8.57 -40.02 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -4.23 Total: 6.76 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -3.81 Total: -0.83 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.18 Total: -53.46 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.07 Total: -12.30 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.45 -8.57 -40.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334335861.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.116 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds