Wall clock time and date at job start Mon Mar 30 2020 01:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47430 * 2 1 4 4 C 1.50699 * 109.46861 * 240.00289 * 2 1 3 5 5 H 1.08007 * 120.00125 * 240.00148 * 4 2 1 6 6 C 1.37877 * 120.00364 * 59.99934 * 4 2 1 7 7 N 1.31518 * 119.99643 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00197 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46666 * 90.00172 * 8 6 4 10 10 H 1.48492 * 109.47171 * 210.00005 * 8 6 4 11 11 H 1.48497 * 109.47125 * 330.00551 * 8 6 4 12 12 N 1.46496 * 109.47273 * 120.00364 * 2 1 3 13 13 C 1.34783 * 119.99932 * 274.99962 * 12 2 1 14 14 O 1.21582 * 119.99827 * 359.97438 * 13 12 2 15 15 C 1.47521 * 119.99991 * 179.97438 * 13 12 2 16 16 C 1.39437 * 120.25054 * 321.18213 * 15 13 12 17 17 C 1.38287 * 120.28402 * 179.97438 * 16 15 13 18 18 C 1.37878 * 120.72607 * 359.97438 * 17 16 15 19 19 C 1.39673 * 120.10831 * 359.97438 * 18 17 16 20 20 N 1.35858 * 133.51108 * 180.02562 * 19 18 17 21 21 C 1.30090 * 109.53497 * 179.74190 * 20 19 18 22 22 N 1.36123 * 110.05277 * 0.39394 * 21 20 19 23 23 C 1.46496 * 126.31496 * 179.87416 * 22 21 20 24 24 C 1.37523 * 107.37962 * 359.61192 * 22 21 20 25 25 H 1.09010 * 109.46638 * 300.00033 * 1 2 3 26 26 H 1.09000 * 109.47235 * 59.99343 * 1 2 3 27 27 H 1.08997 * 109.47430 * 180.02562 * 1 2 3 28 28 H 0.96998 * 119.99267 * 179.97438 * 7 6 4 29 29 H 0.97004 * 120.00128 * 94.99331 * 12 2 1 30 30 H 1.07998 * 119.85709 * 359.97438 * 16 15 13 31 31 H 1.08001 * 119.63505 * 179.97438 * 17 16 15 32 32 H 1.08008 * 119.94591 * 179.97438 * 18 17 16 33 33 H 1.08001 * 124.97490 * 180.23770 * 21 20 19 34 34 H 1.08991 * 109.47422 * 263.93530 * 23 22 21 35 35 H 1.09005 * 109.46906 * 23.93446 * 23 22 21 36 36 H 1.08998 * 109.47410 * 143.92964 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.3446 -2.1614 -4.4124 10 1 2.4871 -0.1401 -5.1120 11 1 3.6306 -1.7566 -3.7121 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8584 1.1614 2.4116 15 6 2.6383 -0.7139 3.5617 16 6 2.2399 -2.0233 3.8284 17 6 2.7004 -2.6762 4.9571 18 6 3.5580 -2.0470 5.8343 19 6 3.9730 -0.7360 5.5894 20 7 4.7899 0.1254 6.2500 21 6 4.8581 1.2481 5.5964 22 7 4.0836 1.1853 4.4787 23 6 3.8990 2.2505 3.4901 24 6 3.5110 -0.0646 4.4455 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 0.7095 1.1619 -3.4844 29 1 2.2490 -1.6319 1.1525 30 1 1.5688 -2.5297 3.1505 31 1 2.3847 -3.6902 5.1536 32 1 3.9096 -2.5686 6.7122 33 1 5.4417 2.1055 5.8977 34 1 2.9901 2.8062 3.7201 35 1 4.7546 2.9253 3.5191 36 1 3.8153 1.8126 2.4955 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334335861.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:46 Heat of formation + Delta-G solvation = 17.556218 kcal Electronic energy + Delta-G solvation = -20697.290402 eV Core-core repulsion = 17567.349064 eV Total energy + Delta-G solvation = -3129.941339 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.20609 -40.58029 -38.12530 -36.79261 -35.02145 -34.36489 -32.09284 -30.70482 -30.13118 -27.90027 -27.35727 -25.17789 -23.49086 -23.17830 -21.97360 -20.91407 -19.15472 -18.23449 -17.94023 -17.44635 -17.16166 -16.84754 -16.36597 -15.96935 -15.85106 -15.04475 -14.74982 -14.60990 -14.42762 -14.14471 -13.78678 -13.44738 -13.03818 -12.98202 -12.91867 -12.77213 -12.72082 -12.44943 -12.28508 -12.15125 -11.39806 -11.36893 -11.12150 -10.69155 -10.58741 -9.80586 -9.41361 -9.10735 -8.19474 -6.36788 -0.32618 0.47451 1.44492 1.45041 1.52729 1.55526 1.71503 2.02613 2.32675 2.55325 2.84481 3.11338 3.28808 3.63318 3.89218 3.90650 4.03571 4.33913 4.37760 4.38268 4.49362 4.72114 4.74823 4.79726 4.90935 5.06784 5.12080 5.29514 5.39292 5.42311 5.48598 5.56866 5.66105 5.81624 5.87142 6.07016 6.15904 6.69459 6.79547 6.87499 7.27991 7.44378 8.86666 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025950 B = 0.004761 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.749634 B = 5879.854699 C = 6264.897007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.273 3.727 3 H 0.003 0.997 4 C -0.548 4.548 5 H 0.071 0.929 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.971 3.029 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.266 1.266 12 N -0.694 5.694 13 C 0.543 3.457 14 O -0.585 6.585 15 C -0.142 4.142 16 C -0.066 4.066 17 C -0.123 4.123 18 C -0.048 4.048 19 C 0.015 3.985 20 N -0.523 5.523 21 C 0.265 3.735 22 N -0.492 5.492 23 C 0.093 3.907 24 C 0.059 3.941 25 H 0.012 0.988 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.266 0.734 29 H 0.404 0.596 30 H 0.152 0.848 31 H 0.176 0.824 32 H 0.156 0.844 33 H 0.260 0.740 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.225 -4.710 13.850 15.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.170 3.830 3 H 0.020 0.980 4 C -0.586 4.586 5 H 0.089 0.911 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.795 3.205 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.190 1.190 12 N -0.342 5.342 13 C 0.331 3.669 14 O -0.468 6.468 15 C -0.148 4.148 16 C -0.086 4.086 17 C -0.143 4.143 18 C -0.068 4.068 19 C -0.102 4.102 20 N -0.243 5.243 21 C -0.020 4.020 22 N -0.180 5.180 23 C -0.049 4.049 24 C -0.054 4.054 25 H 0.031 0.969 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.239 0.761 30 H 0.170 0.830 31 H 0.194 0.806 32 H 0.174 0.826 33 H 0.276 0.724 34 H 0.088 0.912 35 H 0.139 0.861 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.325 -3.834 14.355 16.149 hybrid contribution -0.344 0.077 -1.895 1.927 sum 5.981 -3.757 12.460 14.323 Atomic orbital electron populations 1.21896 0.98119 0.99571 0.99594 1.18375 0.91168 0.91964 0.81473 0.97960 1.21507 1.32693 1.13578 0.90791 0.91121 1.25749 0.94810 0.95522 1.02166 1.70044 1.36901 1.23775 1.24646 0.85362 0.78935 0.78100 0.78054 1.19576 1.21171 1.19050 1.46272 1.64343 1.14187 1.09391 1.18650 0.77880 0.86489 0.83914 1.90692 1.52966 1.17192 1.85960 1.19014 1.03285 0.96582 0.95949 1.21471 0.98086 0.90594 0.98414 1.21220 0.97886 1.01828 0.93345 1.20809 0.95587 0.90215 1.00144 1.19474 1.00701 0.96907 0.93165 1.70496 1.21559 1.02066 1.30145 1.26306 0.93994 0.99067 0.82601 1.45463 1.38156 1.11654 1.22697 1.22120 1.03863 0.88550 0.90343 1.18956 1.00012 0.87589 0.98799 0.96938 0.91378 0.94003 0.92500 0.76092 0.83030 0.80643 0.82600 0.72407 0.91174 0.86110 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.64 9.26 71.98 0.67 -5.97 16 2 C 0.27 13.92 2.56 44.25 0.11 14.04 16 3 H 0.00 0.15 7.58 -2.39 -0.02 0.13 16 4 C -0.55 -28.53 8.73 25.60 0.22 -28.31 16 5 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.92 -51.46 11.32 21.45 0.24 -51.22 16 8 Si 0.97 41.32 29.54 68.60 2.03 43.34 16 9 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 12 N -0.69 -29.01 4.99 -449.30 -2.24 -31.25 16 13 C 0.54 22.40 6.64 86.69 0.58 22.97 16 14 O -0.59 -27.68 12.80 -3.97 -0.05 -27.73 16 15 C -0.14 -4.84 5.77 -20.08 -0.12 -4.95 16 16 C -0.07 -1.70 9.33 22.57 0.21 -1.49 16 17 C -0.12 -2.48 9.99 22.20 0.22 -2.26 16 18 C -0.05 -1.12 10.09 22.53 0.23 -0.89 16 19 C 0.02 0.46 7.22 39.41 0.28 0.75 16 20 N -0.52 -15.03 11.28 -192.02 -2.17 -17.19 16 21 C 0.27 6.30 12.50 180.03 2.25 8.55 16 22 N -0.49 -14.58 3.19 -542.87 -1.73 -16.31 16 23 C 0.09 2.63 9.34 127.77 1.19 3.83 16 24 C 0.06 1.96 6.74 39.25 0.26 2.23 16 25 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 26 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 27 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.27 14.15 8.31 -92.71 -0.77 13.37 16 29 H 0.40 14.49 7.90 -92.71 -0.73 13.76 16 30 H 0.15 3.32 7.78 -2.91 -0.02 3.29 16 31 H 0.18 2.06 8.06 -2.91 -0.02 2.03 16 32 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 33 H 0.26 3.09 8.06 -2.91 -0.02 3.07 16 34 H 0.07 2.15 7.70 -2.39 -0.02 2.14 16 35 H 0.12 2.24 8.13 -2.38 -0.02 2.22 16 36 H 0.06 2.09 6.00 -2.39 -0.01 2.08 16 Total: -1.00 -71.14 305.56 3.02 -68.12 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.38 Total: 22.37 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 6.56 Total: 9.88 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -5.90 Total: -115.98 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.05 Total: -27.73 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Total: -71.14 3.02 -68.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334335861.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.675 kcal (2) G-P(sol) polarization free energy of solvation -71.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds