Wall clock time and date at job start Mon Mar 30 2020 01:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47452 * 2 1 4 4 C 1.50708 * 109.46560 * 240.00275 * 2 1 3 5 5 H 1.08003 * 119.99432 * 240.00116 * 4 2 1 6 6 C 1.37875 * 120.00048 * 60.00362 * 4 2 1 7 7 N 1.31513 * 120.00238 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99621 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47225 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46992 * 120.00113 * 8 6 4 11 11 H 1.48500 * 109.47007 * 239.99469 * 8 6 4 12 12 N 1.46496 * 109.47074 * 120.00359 * 2 1 3 13 13 C 1.46498 * 120.00122 * 59.99803 * 12 2 1 14 14 C 1.34779 * 120.00062 * 239.99410 * 12 2 1 15 15 O 1.21543 * 119.99652 * 1.25010 * 14 12 2 16 16 C 1.47945 * 120.00159 * 181.24993 * 14 12 2 17 17 C 1.39792 * 119.32118 * 172.61607 * 16 14 12 18 18 C 1.37008 * 119.45612 * 179.74653 * 17 16 14 19 19 C 1.39774 * 118.24168 * 0.48981 * 18 17 16 20 20 C 1.46144 * 134.25369 * 179.74149 * 19 18 17 21 21 C 1.34430 * 106.92399 * 180.02562 * 20 19 18 22 22 N 1.36715 * 110.00379 * 0.02562 * 21 20 19 23 23 H 0.97006 * 125.00202 * 179.97438 * 22 21 20 24 24 C 1.37558 * 110.00456 * 359.97438 * 22 21 20 25 25 N 1.32171 * 133.20437 * 179.97438 * 24 22 21 26 26 H 1.09001 * 109.47452 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46810 * 299.99718 * 1 2 3 28 28 H 1.09006 * 109.47163 * 59.99602 * 1 2 3 29 29 H 0.96996 * 120.00091 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47483 * 263.85111 * 13 12 2 31 31 H 1.09003 * 109.47422 * 143.85152 * 13 12 2 32 32 H 1.09007 * 109.47391 * 23.85196 * 13 12 2 33 33 H 1.07999 * 120.26808 * 359.97216 * 17 16 14 34 34 H 1.08002 * 120.88246 * 180.28480 * 18 17 16 35 35 H 1.08006 * 126.53668 * 0.02562 * 20 19 18 36 36 H 1.07997 * 124.99765 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5886 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1481 -2.2856 -3.6039 10 1 1.1675 -1.5864 -4.8166 11 1 3.1470 -0.1857 -4.8162 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7933 -0.0358 2.0833 15 8 3.0682 1.1343 1.9025 16 6 3.3092 -0.7411 3.2771 17 6 4.2348 -0.0989 4.1048 18 6 4.7105 -0.7475 5.2139 19 6 4.2531 -2.0434 5.4693 20 6 4.5195 -3.0319 6.5122 21 6 3.7754 -4.1140 6.2250 22 7 3.0558 -3.8971 5.0829 23 1 2.4474 -4.5355 4.6789 24 6 3.3215 -2.6402 4.5910 25 7 2.8892 -1.9714 3.5361 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 0.7081 1.1610 -3.4844 30 1 0.8001 -2.1453 2.0900 31 1 2.5067 -2.6092 1.8888 32 1 1.4230 -2.5690 0.4773 33 1 4.5693 0.9017 3.8739 34 1 5.4225 -0.2714 5.8717 35 1 5.1869 -2.9153 7.3533 36 1 3.7498 -5.0213 6.8103 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335824050.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:24 Heat of formation + Delta-G solvation = 59.018771 kcal Electronic energy + Delta-G solvation = -20628.882455 eV Core-core repulsion = 17500.739068 eV Total energy + Delta-G solvation = -3128.143388 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.57594 -39.27259 -37.23992 -35.33379 -33.30594 -32.49138 -30.12611 -29.89620 -28.66923 -25.99579 -25.18356 -24.25453 -22.98560 -21.10142 -20.81292 -18.82928 -18.44833 -16.80471 -16.32818 -16.19717 -15.41801 -15.26733 -14.68838 -14.42433 -14.19368 -13.84373 -13.42201 -13.33523 -12.85002 -12.46947 -12.23929 -12.03846 -11.95224 -11.51921 -11.34251 -11.03210 -10.79895 -10.65440 -10.45883 -10.18992 -10.13629 -9.57383 -9.08678 -8.67868 -8.48254 -8.38947 -8.15877 -7.47955 -6.03672 -4.11172 0.74879 1.36705 2.50303 2.65545 3.28560 3.35285 3.37372 3.40956 3.91335 4.22216 4.41265 4.46652 4.58777 4.72702 5.09983 5.18150 5.25705 5.27797 5.58694 5.69247 5.79324 6.23731 6.28237 6.32602 6.39453 6.42822 6.70108 6.80531 6.88740 6.97408 7.10292 7.16250 7.49890 7.57749 7.76099 7.91473 8.07351 8.23624 8.57452 8.85883 9.06679 9.54865 11.01779 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029065 B = 0.004583 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.133337 B = 6108.396411 C = 6441.781575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.254 3.746 3 H 0.065 0.935 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.566 5.566 13 C 0.087 3.913 14 C 0.552 3.448 15 O -0.547 6.547 16 C 0.133 3.867 17 C -0.143 4.143 18 C -0.041 4.041 19 C -0.143 4.143 20 C -0.202 4.202 21 C 0.065 3.935 22 N -0.581 5.581 23 H 0.420 0.580 24 C 0.272 3.728 25 N -0.457 5.457 26 H 0.030 0.970 27 H 0.011 0.989 28 H 0.094 0.906 29 H 0.262 0.738 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.149 0.851 34 H 0.138 0.862 35 H 0.150 0.850 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.718 -10.205 17.493 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.154 3.846 3 H 0.083 0.917 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.294 5.294 13 C -0.057 4.057 14 C 0.337 3.663 15 O -0.425 6.425 16 C -0.014 4.014 17 C -0.165 4.165 18 C -0.067 4.067 19 C -0.150 4.150 20 C -0.228 4.228 21 C -0.062 4.062 22 N -0.188 5.188 23 H 0.258 0.742 24 C 0.038 3.962 25 N -0.173 5.173 26 H 0.049 0.951 27 H 0.030 0.970 28 H 0.112 0.888 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.167 0.833 34 H 0.156 0.844 35 H 0.167 0.833 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.060 -10.008 16.623 19.823 hybrid contribution 0.513 -0.605 -0.473 0.923 sum 4.572 -10.612 16.149 19.858 Atomic orbital electron populations 1.22070 0.97953 0.99490 1.00803 1.19056 0.91096 0.94614 0.79871 0.91744 1.21357 1.31692 1.12960 0.90184 0.92140 1.24887 0.94970 0.94995 0.98925 1.69892 1.36437 1.22658 1.23613 0.86432 0.78578 0.79594 0.82738 1.19838 1.20953 1.20895 1.48180 1.46475 1.12337 1.22425 1.22070 1.00700 0.82446 1.00499 1.17799 0.80184 0.86185 0.82141 1.90742 1.60080 1.15635 1.76076 1.21332 0.95273 0.88637 0.96147 1.21577 0.98042 1.02115 0.94765 1.20638 0.97854 0.92051 0.96171 1.20055 1.00914 0.95916 0.98142 1.21631 1.06284 0.93275 1.01577 1.21882 0.95218 1.00371 0.88770 1.41533 1.40848 1.13003 1.23367 0.74199 1.18616 0.96748 0.87592 0.93230 1.67236 1.26662 1.07688 1.15753 0.95112 0.96967 0.88770 0.92757 0.94224 0.89512 0.91536 0.83289 0.84440 0.83272 0.80599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 8.97 37.16 0.33 -3.28 16 2 C 0.25 6.76 2.63 -69.08 -0.18 6.58 16 3 H 0.06 1.95 6.90 -51.93 -0.36 1.60 16 4 C -0.52 -14.57 7.95 -34.44 -0.27 -14.84 16 5 H 0.06 1.67 7.44 -52.48 -0.39 1.28 16 6 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.48 11.32 55.43 0.63 -24.85 16 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.57 -13.19 2.75 -176.33 -0.49 -13.68 16 13 C 0.09 1.69 8.20 59.85 0.49 2.18 16 14 C 0.55 12.58 7.65 -12.28 -0.09 12.49 16 15 O -0.55 -13.97 15.63 5.33 0.08 -13.89 16 16 C 0.13 2.48 6.62 -82.99 -0.55 1.93 16 17 C -0.14 -2.24 9.55 -39.45 -0.38 -2.62 16 18 C -0.04 -0.52 10.17 -39.45 -0.40 -0.92 16 19 C -0.14 -1.85 6.39 -105.00 -0.67 -2.52 16 20 C -0.20 -1.89 11.08 -37.76 -0.42 -2.31 16 21 C 0.06 0.50 11.81 -16.72 -0.20 0.30 16 22 N -0.58 -5.77 6.05 -12.10 -0.07 -5.85 16 23 H 0.42 3.16 8.96 -40.82 -0.37 2.79 16 24 C 0.27 3.85 8.43 -155.79 -1.31 2.53 16 25 N -0.46 -7.70 6.02 -8.82 -0.05 -7.75 16 26 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.04 0.72 8.13 -51.93 -0.42 0.30 16 31 H 0.09 1.59 5.31 -52.05 -0.28 1.32 16 32 H 0.07 1.34 7.12 -51.93 -0.37 0.97 16 33 H 0.15 2.27 7.62 -52.49 -0.40 1.87 16 34 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.18 0.59 8.06 -52.49 -0.42 0.17 16 LS Contribution 303.23 15.07 4.57 4.57 Total: -1.00 -33.33 303.23 -8.22 -41.55 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -4.12 Total: 2.31 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -3.75 Total: 1.21 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 0.02 Total: -52.13 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.08 Total: -13.89 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.33 -8.22 -41.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335824050.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.569 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds