Wall clock time and date at job start Mon Mar 30 2020 01:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47292 * 2 1 4 4 C 1.50703 * 109.47056 * 120.00058 * 2 1 3 5 5 H 1.08000 * 120.00377 * 119.99694 * 4 2 1 6 6 C 1.37881 * 119.99636 * 299.99622 * 4 2 1 7 7 N 1.31509 * 119.99924 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99911 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46837 * 90.00055 * 8 6 4 10 10 H 1.48497 * 109.47267 * 210.00258 * 8 6 4 11 11 H 1.48504 * 109.47109 * 330.00504 * 8 6 4 12 12 N 1.46499 * 109.46968 * 239.99378 * 2 1 3 13 13 C 1.46498 * 120.00778 * 300.00199 * 12 2 1 14 14 C 1.34780 * 119.99879 * 120.00644 * 12 2 1 15 15 O 1.21545 * 119.99719 * 1.95412 * 14 12 2 16 16 C 1.47950 * 120.00230 * 181.95994 * 14 12 2 17 17 C 1.39792 * 119.31877 * 172.72358 * 16 14 12 18 18 C 1.37013 * 119.45419 * 180.02562 * 17 16 14 19 19 C 1.39770 * 118.23552 * 359.97438 * 18 17 16 20 20 C 1.46151 * 134.23863 * 180.02562 * 19 18 17 21 21 C 1.34435 * 106.92077 * 179.97438 * 20 19 18 22 22 N 1.36725 * 110.00166 * 359.97438 * 21 20 19 23 23 H 0.97006 * 124.99873 * 179.97438 * 22 21 20 24 24 C 1.37560 * 110.00663 * 0.02562 * 22 21 20 25 25 N 1.32161 * 133.21212 * 179.97438 * 24 22 21 26 26 H 1.09002 * 109.47025 * 60.00184 * 1 2 3 27 27 H 1.09002 * 109.47309 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47296 * 300.00571 * 1 2 3 29 29 H 0.97001 * 119.99964 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47600 * 263.74258 * 13 12 2 31 31 H 1.09001 * 109.46672 * 23.73570 * 13 12 2 32 32 H 1.08996 * 109.47405 * 143.73651 * 13 12 2 33 33 H 1.08007 * 120.27240 * 0.03919 * 17 16 14 34 34 H 1.07999 * 120.88323 * 179.97438 * 18 17 16 35 35 H 1.08003 * 126.53981 * 0.24747 * 20 19 18 36 36 H 1.07994 * 124.99758 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8297 2.6033 8 14 2.3212 -1.1202 4.0080 9 1 3.6295 -0.5459 4.4124 10 1 1.3430 -0.9491 5.1121 11 1 2.4857 -2.5662 3.7121 12 7 2.0182 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4280 14 6 2.7932 -0.0358 -2.0833 15 8 3.1162 1.1169 -1.8733 16 6 3.2506 -0.7201 -3.3127 17 6 3.9229 0.0135 -4.2946 18 6 4.3472 -0.6173 -5.4345 19 6 4.0877 -1.9840 -5.5697 20 6 4.3712 -2.9785 -6.6025 21 6 3.8713 -4.1481 -6.1672 22 7 3.2920 -3.9813 -4.9400 23 1 2.8641 -4.6844 -4.4266 24 6 3.4043 -2.6697 -4.5409 25 7 3.0148 -2.0162 -3.4602 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.7081 1.1610 3.4843 30 1 2.4694 -2.7352 -1.0701 31 1 0.7455 -2.3296 -0.8913 32 1 1.5148 -2.2587 -2.4949 33 1 4.1065 1.0687 -4.1557 34 1 4.8683 -0.0729 -6.2081 35 1 4.8880 -2.8074 -7.5352 36 1 3.9208 -5.0821 -6.7071 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335824051.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:27 Heat of formation + Delta-G solvation = 60.058851 kcal Electronic energy + Delta-G solvation = -20627.908392 eV Core-core repulsion = 17499.810105 eV Total energy + Delta-G solvation = -3128.098286 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.57845 -39.27428 -37.24207 -35.33933 -33.30725 -32.48925 -30.12765 -29.89668 -28.66750 -26.02319 -25.17408 -24.25718 -22.98604 -21.09879 -20.81153 -18.81567 -18.44967 -16.80558 -16.31627 -16.20674 -15.45071 -15.23785 -14.68601 -14.41764 -14.20645 -13.85552 -13.42452 -13.34390 -12.83433 -12.48197 -12.33842 -12.04131 -11.95544 -11.50192 -11.31647 -11.00691 -10.78153 -10.67230 -10.46263 -10.19994 -10.11895 -9.53778 -9.10508 -8.67164 -8.48703 -8.38025 -8.16049 -7.47582 -6.02509 -4.09837 0.74608 1.36298 2.50091 2.65404 3.30766 3.35413 3.37264 3.40692 3.91451 4.21726 4.41172 4.47417 4.58709 4.72563 5.09764 5.17793 5.25453 5.28814 5.58261 5.68665 5.78802 6.19615 6.25555 6.31601 6.42389 6.46255 6.66175 6.81021 6.87220 6.96491 7.10133 7.14949 7.50870 7.56363 7.76727 7.91765 8.07327 8.24258 8.57903 8.87012 9.06835 9.56115 11.02876 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029272 B = 0.004603 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.319674 B = 6080.989603 C = 6494.655781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.254 3.746 3 H 0.065 0.935 4 C -0.522 4.522 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.566 5.566 13 C 0.089 3.911 14 C 0.552 3.448 15 O -0.546 6.546 16 C 0.133 3.867 17 C -0.143 4.143 18 C -0.041 4.041 19 C -0.143 4.143 20 C -0.202 4.202 21 C 0.065 3.935 22 N -0.581 5.581 23 H 0.420 0.580 24 C 0.272 3.728 25 N -0.456 5.456 26 H 0.012 0.988 27 H 0.031 0.969 28 H 0.095 0.905 29 H 0.263 0.737 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.149 0.851 34 H 0.138 0.862 35 H 0.150 0.850 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.006 -9.944 -17.976 20.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.154 3.846 3 H 0.083 0.917 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.295 5.295 13 C -0.055 4.055 14 C 0.337 3.663 15 O -0.425 6.425 16 C -0.014 4.014 17 C -0.165 4.165 18 C -0.067 4.067 19 C -0.150 4.150 20 C -0.228 4.228 21 C -0.062 4.062 22 N -0.188 5.188 23 H 0.258 0.742 24 C 0.038 3.962 25 N -0.173 5.173 26 H 0.031 0.969 27 H 0.050 0.950 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.167 0.833 34 H 0.156 0.844 35 H 0.167 0.833 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.560 -9.826 -16.971 19.931 hybrid contribution 0.540 -0.617 0.492 0.956 sum 4.100 -10.442 -16.479 19.935 Atomic orbital electron populations 1.22092 0.98009 0.99493 1.00884 1.19049 0.91026 0.94614 0.79930 0.91735 1.21315 1.31669 1.12919 0.90172 0.92252 1.24884 0.94975 0.95015 0.98906 1.69879 1.36429 1.22711 1.23697 0.86484 0.78628 0.79878 0.82331 1.20609 1.21137 1.19969 1.48181 1.46726 1.12284 1.22268 1.22063 0.99770 0.81825 1.01851 1.17796 0.80292 0.85887 0.82370 1.90744 1.58204 1.16933 1.76593 1.21336 0.96383 0.87854 0.95814 1.21577 0.99271 1.02239 0.93441 1.20638 0.97006 0.91931 0.97134 1.20055 1.03665 0.94644 0.96668 1.21634 1.09127 0.91357 1.00657 1.21886 0.98303 1.00040 0.86000 1.41538 1.51804 1.07504 1.17906 0.74186 1.18615 0.99032 0.85923 0.92597 1.67225 1.19886 1.09121 1.21073 0.96914 0.95014 0.88699 0.92723 0.93731 0.92238 0.89534 0.83293 0.84439 0.83270 0.80596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 8.96 37.16 0.33 -3.29 16 2 C 0.25 6.77 2.63 -69.08 -0.18 6.59 16 3 H 0.06 1.96 6.90 -51.93 -0.36 1.60 16 4 C -0.52 -14.65 8.37 -34.44 -0.29 -14.94 16 5 H 0.06 1.66 7.65 -52.49 -0.40 1.26 16 6 C 0.06 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.58 11.32 55.43 0.63 -24.95 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.57 -13.20 2.75 -176.34 -0.49 -13.69 16 13 C 0.09 1.73 8.48 59.85 0.51 2.24 16 14 C 0.55 12.56 7.65 -12.28 -0.09 12.47 16 15 O -0.55 -13.97 15.63 5.33 0.08 -13.88 16 16 C 0.13 2.48 6.62 -82.99 -0.55 1.93 16 17 C -0.14 -2.23 9.55 -39.45 -0.38 -2.61 16 18 C -0.04 -0.52 10.17 -39.45 -0.40 -0.92 16 19 C -0.14 -1.84 6.39 -105.00 -0.67 -2.51 16 20 C -0.20 -1.89 11.08 -37.75 -0.42 -2.31 16 21 C 0.06 0.50 11.81 -16.71 -0.20 0.30 16 22 N -0.58 -5.78 6.05 -12.10 -0.07 -5.85 16 23 H 0.42 3.18 8.96 -40.82 -0.37 2.81 16 24 C 0.27 3.84 8.43 -155.80 -1.31 2.53 16 25 N -0.46 -7.70 6.01 -8.82 -0.05 -7.75 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.03 0.73 6.67 -51.93 -0.35 0.38 16 28 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.16 6.45 -51.93 -0.33 0.82 16 32 H 0.09 1.54 5.27 -52.26 -0.28 1.26 16 33 H 0.15 2.25 7.62 -52.48 -0.40 1.85 16 34 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.15 1.01 8.06 -52.48 -0.42 0.58 16 36 H 0.18 0.59 8.06 -52.49 -0.42 0.17 16 LS Contribution 302.42 15.07 4.56 4.56 Total: -1.00 -33.49 302.42 -8.16 -41.64 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -4.05 Total: 2.21 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -3.74 Total: 1.18 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.02 Total: -52.24 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.08 Total: -13.88 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.49 -8.16 -41.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335824051.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.701 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds