Wall clock time and date at job start Mon Mar 30 2020 01:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47292 * 2 1 4 4 C 1.50703 * 109.47056 * 120.00058 * 2 1 3 5 5 H 1.08000 * 120.00377 * 119.99694 * 4 2 1 6 6 C 1.37881 * 119.99636 * 299.99622 * 4 2 1 7 7 N 1.31509 * 119.99924 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99911 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46837 * 90.00055 * 8 6 4 10 10 H 1.48497 * 109.47267 * 210.00258 * 8 6 4 11 11 H 1.48504 * 109.47109 * 330.00504 * 8 6 4 12 12 N 1.46499 * 109.46968 * 239.99378 * 2 1 3 13 13 C 1.46498 * 120.00778 * 300.00199 * 12 2 1 14 14 C 1.34780 * 119.99879 * 120.00644 * 12 2 1 15 15 O 1.21545 * 119.99719 * 1.95412 * 14 12 2 16 16 C 1.47950 * 120.00230 * 181.95994 * 14 12 2 17 17 C 1.39792 * 119.31877 * 172.72358 * 16 14 12 18 18 C 1.37013 * 119.45419 * 180.02562 * 17 16 14 19 19 C 1.39770 * 118.23552 * 359.97438 * 18 17 16 20 20 C 1.46151 * 134.23863 * 180.02562 * 19 18 17 21 21 C 1.34435 * 106.92077 * 179.97438 * 20 19 18 22 22 N 1.36725 * 110.00166 * 359.97438 * 21 20 19 23 23 H 0.97006 * 124.99873 * 179.97438 * 22 21 20 24 24 C 1.37560 * 110.00663 * 0.02562 * 22 21 20 25 25 N 1.32161 * 133.21212 * 179.97438 * 24 22 21 26 26 H 1.09002 * 109.47025 * 60.00184 * 1 2 3 27 27 H 1.09002 * 109.47309 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47296 * 300.00571 * 1 2 3 29 29 H 0.97001 * 119.99964 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47600 * 263.74258 * 13 12 2 31 31 H 1.09001 * 109.46672 * 23.73570 * 13 12 2 32 32 H 1.08996 * 109.47405 * 143.73651 * 13 12 2 33 33 H 1.08007 * 120.27240 * 0.03919 * 17 16 14 34 34 H 1.07999 * 120.88323 * 179.97438 * 18 17 16 35 35 H 1.08003 * 126.53981 * 0.24747 * 20 19 18 36 36 H 1.07994 * 124.99758 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8297 2.6033 8 14 2.3212 -1.1202 4.0080 9 1 3.6295 -0.5459 4.4124 10 1 1.3430 -0.9491 5.1121 11 1 2.4857 -2.5662 3.7121 12 7 2.0182 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4280 14 6 2.7932 -0.0358 -2.0833 15 8 3.1162 1.1169 -1.8733 16 6 3.2506 -0.7201 -3.3127 17 6 3.9229 0.0135 -4.2946 18 6 4.3472 -0.6173 -5.4345 19 6 4.0877 -1.9840 -5.5697 20 6 4.3712 -2.9785 -6.6025 21 6 3.8713 -4.1481 -6.1672 22 7 3.2920 -3.9813 -4.9400 23 1 2.8641 -4.6844 -4.4266 24 6 3.4043 -2.6697 -4.5409 25 7 3.0148 -2.0162 -3.4602 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.7081 1.1610 3.4843 30 1 2.4694 -2.7352 -1.0701 31 1 0.7455 -2.3296 -0.8913 32 1 1.5148 -2.2587 -2.4949 33 1 4.1065 1.0687 -4.1557 34 1 4.8683 -0.0729 -6.2081 35 1 4.8880 -2.8074 -7.5352 36 1 3.9208 -5.0821 -6.7071 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335824051.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:27 Heat of formation + Delta-G solvation = 38.636818 kcal Electronic energy + Delta-G solvation = -20628.837321 eV Core-core repulsion = 17499.810105 eV Total energy + Delta-G solvation = -3129.027215 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.56145 -40.84017 -38.48001 -37.23817 -34.95429 -33.95537 -31.64857 -31.05022 -29.97535 -27.69224 -27.31793 -25.52401 -24.17053 -22.68647 -21.66468 -20.46788 -19.42868 -18.58529 -18.05110 -17.41488 -17.16745 -16.62344 -16.28496 -15.76138 -15.65168 -15.18597 -14.57341 -14.48180 -14.26825 -14.05890 -13.98458 -13.49897 -13.23062 -13.00910 -12.95482 -12.80202 -12.71545 -12.63622 -12.21368 -12.12748 -11.48444 -11.26293 -11.18106 -10.55462 -10.04078 -9.62796 -9.29058 -8.96964 -8.16356 -6.33276 -0.38796 0.29383 1.39393 1.41169 1.51318 1.63781 1.76180 2.00175 2.26252 2.45356 2.90768 3.10877 3.31148 3.67802 3.84505 3.97125 4.15320 4.40796 4.52680 4.71846 4.73485 4.78241 4.83578 4.86984 4.93452 5.03388 5.18148 5.19792 5.41991 5.48538 5.53523 5.60403 5.65309 5.94544 6.00529 6.12797 6.32408 6.71919 6.72433 6.89154 7.23082 7.40873 8.88262 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029272 B = 0.004603 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.319674 B = 6080.989603 C = 6494.655781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.257 3.743 3 H 0.015 0.985 4 C -0.540 4.540 5 H 0.054 0.946 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.967 3.033 9 H -0.281 1.281 10 H -0.275 1.275 11 H -0.265 1.265 12 N -0.578 5.578 13 C 0.098 3.902 14 C 0.544 3.456 15 O -0.591 6.591 16 C 0.095 3.905 17 C -0.152 4.152 18 C -0.033 4.033 19 C -0.142 4.142 20 C -0.216 4.216 21 C 0.097 3.903 22 N -0.574 5.574 23 H 0.432 0.568 24 C 0.244 3.756 25 N -0.468 5.468 26 H 0.021 0.979 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.266 0.734 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.142 0.858 34 H 0.176 0.824 35 H 0.181 0.819 36 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.890 -13.264 -20.445 24.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.155 3.845 3 H 0.033 0.967 4 C -0.579 4.579 5 H 0.072 0.928 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.792 3.208 9 H -0.207 1.207 10 H -0.200 1.200 11 H -0.189 1.189 12 N -0.306 5.306 13 C -0.044 4.044 14 C 0.332 3.668 15 O -0.473 6.473 16 C -0.050 4.050 17 C -0.175 4.175 18 C -0.059 4.059 19 C -0.150 4.150 20 C -0.241 4.241 21 C -0.030 4.030 22 N -0.182 5.182 23 H 0.272 0.728 24 C 0.008 3.992 25 N -0.185 5.185 26 H 0.040 0.960 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.126 0.874 33 H 0.160 0.840 34 H 0.193 0.807 35 H 0.198 0.802 36 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 4.430 -13.180 -19.453 23.911 hybrid contribution 0.328 0.270 1.048 1.131 sum 4.758 -12.910 -18.405 22.979 Atomic orbital electron populations 1.21875 0.96735 1.00145 1.00195 1.18705 0.91973 0.92420 0.81404 0.96739 1.21503 1.32152 1.13019 0.91203 0.92769 1.25731 0.94959 0.95664 1.01904 1.70009 1.37035 1.23779 1.24578 0.85423 0.77951 0.79001 0.78433 1.20657 1.20021 1.18933 1.48185 1.47231 1.13561 1.21602 1.22140 0.99380 0.79659 1.03225 1.18498 0.79286 0.85613 0.83445 1.90684 1.59709 1.18970 1.77943 1.20586 1.00233 0.89037 0.95108 1.21563 0.99738 1.01991 0.94183 1.20971 0.96074 0.92332 0.96531 1.20583 1.02058 0.95075 0.97284 1.22057 1.10272 0.90542 1.01188 1.22849 0.94449 1.01545 0.84198 1.41759 1.51501 1.06187 1.18737 0.72823 1.18914 1.00024 0.87836 0.92395 1.66827 1.20442 1.08481 1.22748 0.96033 0.93517 0.90826 0.92440 0.93959 0.92362 0.87443 0.84016 0.80706 0.80207 0.75323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.75 8.96 71.98 0.64 -6.11 16 2 C 0.26 14.47 2.63 44.24 0.12 14.59 16 3 H 0.01 0.96 6.90 -2.39 -0.02 0.94 16 4 C -0.54 -31.42 8.37 25.60 0.21 -31.21 16 5 H 0.05 3.13 7.65 -2.91 -0.02 3.10 16 6 C 0.02 0.98 5.30 84.66 0.45 1.43 16 7 N -0.92 -54.28 11.32 21.45 0.24 -54.04 16 8 Si 0.97 44.74 29.54 68.60 2.03 46.76 16 9 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 12 N -0.58 -28.36 2.75 -830.11 -2.28 -30.65 16 13 C 0.10 3.93 8.48 127.77 1.08 5.02 16 14 C 0.54 26.46 7.65 86.82 0.66 27.12 16 15 O -0.59 -32.80 15.63 -3.86 -0.06 -32.86 16 16 C 0.10 3.68 6.62 41.98 0.28 3.96 16 17 C -0.15 -4.86 9.55 22.36 0.21 -4.65 16 18 C -0.03 -0.79 10.17 22.35 0.23 -0.56 16 19 C -0.14 -3.24 6.39 -20.11 -0.13 -3.37 16 20 C -0.22 -2.91 11.08 23.46 0.26 -2.65 16 21 C 0.10 0.92 11.81 83.06 0.98 1.90 16 22 N -0.57 -9.19 6.05 -192.19 -1.16 -10.35 16 23 H 0.43 4.93 8.96 -92.70 -0.83 4.10 16 24 C 0.24 6.39 8.43 134.15 1.13 7.52 16 25 N -0.47 -15.76 6.01 -181.83 -1.09 -16.86 16 26 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 2.20 6.67 -2.39 -0.02 2.19 16 28 H 0.07 4.11 6.07 -2.39 -0.01 4.09 16 29 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 30 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 2.29 6.45 -2.39 -0.02 2.27 16 32 H 0.11 3.85 5.27 -3.04 -0.02 3.83 16 33 H 0.14 4.57 7.62 -2.91 -0.02 4.55 16 34 H 0.18 2.68 8.06 -2.91 -0.02 2.65 16 35 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 36 H 0.23 -0.26 8.06 -2.91 -0.02 -0.28 16 Total: -1.00 -78.39 302.42 4.09 -74.30 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.29 Total: 10.71 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 6.13 Total: 12.99 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -4.30 Total: -111.90 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -0.06 Total: -32.86 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -78.39 4.09 -74.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335824051.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.935 kcal (2) G-P(sol) polarization free energy of solvation -78.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds