Wall clock time and date at job start Mon Mar 30 2020 01:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 115.54993 * 2 1 4 4 C 1.53001 * 117.49788 * 214.33186 * 2 1 3 5 5 H 1.09001 * 117.50032 * 144.99549 * 4 2 1 6 6 C 1.50694 * 117.49922 * 359.97438 * 4 2 1 7 7 O 1.21291 * 120.00198 * 0.02562 * 6 4 2 8 8 N 1.34778 * 120.00219 * 180.02562 * 6 4 2 9 9 C 1.37104 * 120.00375 * 180.02562 * 8 6 4 10 10 H 1.08004 * 120.00101 * 222.65977 * 9 8 6 11 11 C 1.38952 * 119.99893 * 42.65360 * 9 8 6 12 12 N 1.31415 * 119.99751 * 19.22283 * 11 9 8 13 13 Si 1.86793 * 120.00029 * 199.21872 * 11 9 8 14 14 H 1.48507 * 109.47258 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47460 * 120.00317 * 13 11 9 16 16 H 1.48505 * 109.47198 * 240.00296 * 13 11 9 17 17 C 1.46501 * 120.00043 * 359.97438 * 8 6 4 18 18 C 1.54885 * 110.75873 * 125.09133 * 17 8 6 19 19 C 1.54266 * 104.31574 * 156.32583 * 18 17 8 20 20 C 1.53872 * 106.59531 * 336.32184 * 19 18 17 21 21 C 1.54267 * 106.60288 * 0.02562 * 20 19 18 22 22 C 1.53000 * 117.49986 * 145.70912 * 2 1 3 23 23 F 1.39895 * 117.50048 * 359.97438 * 22 2 1 24 24 F 1.39901 * 117.49805 * 214.97357 * 22 2 1 25 25 H 1.09005 * 109.47179 * 205.67242 * 1 2 3 26 26 H 1.08992 * 109.47112 * 325.66825 * 1 2 3 27 27 H 1.09002 * 109.47260 * 85.66735 * 1 2 3 28 28 H 0.96996 * 119.99603 * 179.97438 * 12 11 9 29 29 H 1.09000 * 110.81308 * 1.75409 * 17 8 6 30 30 H 1.09007 * 110.48524 * 37.57846 * 18 17 8 31 31 H 1.09009 * 110.48548 * 275.07189 * 18 17 8 32 32 H 1.08999 * 110.03003 * 95.61033 * 19 18 17 33 33 H 1.09001 * 110.03339 * 217.03985 * 19 18 17 34 34 H 1.09004 * 110.02911 * 119.28533 * 20 19 18 35 35 H 1.08995 * 110.03241 * 240.70922 * 20 19 18 36 36 H 1.08997 * 110.48491 * 142.28238 * 21 20 19 37 37 H 1.08996 * 110.48635 * 264.80071 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1207 -0.7654 5 1 3.1713 -0.8746 -1.2690 6 6 1.3720 -2.1404 -1.4611 7 8 0.1637 -2.0531 -1.4015 8 7 1.9415 -3.1494 -2.1496 9 6 1.1551 -4.0769 -2.7830 10 1 1.4085 -5.1255 -2.7312 11 6 0.0319 -3.6677 -3.4914 12 7 -0.0808 -2.4171 -3.8791 13 14 -1.3176 -4.8952 -3.8927 14 1 -0.9528 -6.2278 -3.3480 15 1 -2.5943 -4.4444 -3.2829 16 1 -1.4789 -4.9895 -5.3660 17 6 3.4009 -3.2547 -2.2221 18 6 3.8757 -4.6471 -1.7376 19 6 5.2489 -4.8385 -2.4138 20 6 5.2552 -3.9351 -3.6594 21 6 3.8858 -3.2258 -3.6963 22 6 2.2364 -1.1212 0.7646 23 9 1.4341 -2.0677 1.4107 24 9 3.4367 -0.8059 1.4106 25 1 -0.3634 -0.9263 0.4452 26 1 -0.3633 0.8486 0.5795 27 1 -0.3634 0.0776 -1.0247 28 1 -0.8647 -2.1316 -4.3739 29 1 3.8756 -2.4619 -1.6439 30 1 3.1798 -5.4213 -2.0612 31 1 3.9798 -4.6584 -0.6525 32 1 6.0455 -4.5403 -1.7321 33 1 5.3787 -5.8801 -2.7074 34 1 6.0549 -3.1984 -3.5823 35 1 5.3881 -4.5383 -4.5574 36 1 3.9978 -2.1978 -4.0410 37 1 3.1920 -3.7689 -4.3379 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336448242.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:46 Heat of formation + Delta-G solvation = -97.764594 kcal Electronic energy + Delta-G solvation = -22712.736548 eV Core-core repulsion = 19127.105337 eV Total energy + Delta-G solvation = -3585.631211 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.25283 -46.90992 -39.05154 -37.24965 -35.34497 -33.27436 -31.56222 -28.21012 -28.07995 -26.85921 -25.36234 -22.66344 -20.88550 -20.07424 -19.74195 -18.91979 -17.63375 -16.48922 -16.13355 -15.81984 -15.39181 -14.98069 -14.61392 -14.13561 -13.60997 -13.48053 -13.28750 -13.09842 -13.02583 -12.71652 -12.51647 -12.25165 -11.78023 -11.62521 -11.41313 -11.12987 -10.97438 -10.81547 -10.76153 -10.53642 -10.51594 -10.18145 -10.09470 -9.87547 -9.72239 -9.35329 -8.75067 -7.99512 -7.09909 -6.13406 -3.86311 3.19615 3.31700 3.40339 3.41352 3.42528 4.19955 4.49042 4.56204 4.72825 5.04787 5.08882 5.17174 5.22373 5.46060 5.47485 5.54637 5.74631 5.91425 6.01996 6.03420 6.10248 6.11232 6.18440 6.24871 6.29501 6.39881 6.42285 6.53602 6.55876 6.85758 6.87671 7.05396 7.13467 7.63350 8.24876 9.03303 9.13340 9.63763 10.25036 10.95040 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.013391 B = 0.010096 C = 0.006631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.490195 B = 2772.647692 C = 4221.575033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.117 4.117 3 H 0.123 0.877 4 C -0.171 4.171 5 H 0.129 0.871 6 C 0.501 3.499 7 O -0.516 6.516 8 N -0.435 5.435 9 C -0.340 4.340 10 H 0.081 0.919 11 C 0.073 3.927 12 N -0.828 5.828 13 Si 0.907 3.093 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.287 1.287 17 C 0.126 3.874 18 C -0.132 4.132 19 C -0.120 4.120 20 C -0.122 4.122 21 C -0.123 4.123 22 C 0.200 3.800 23 F -0.152 7.152 24 F -0.169 7.169 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.263 0.737 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.014 2.119 3.666 9.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.137 4.137 3 H 0.141 0.859 4 C -0.194 4.194 5 H 0.147 0.853 6 C 0.287 3.713 7 O -0.393 6.393 8 N -0.155 5.155 9 C -0.467 4.467 10 H 0.099 0.901 11 C -0.138 4.138 12 N -0.461 5.461 13 Si 0.734 3.266 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.213 1.213 17 C 0.021 3.979 18 C -0.170 4.170 19 C -0.158 4.158 20 C -0.161 4.161 21 C -0.162 4.162 22 C 0.163 3.837 23 F -0.132 7.132 24 F -0.150 7.150 25 H 0.094 0.906 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.263 2.260 3.632 8.429 hybrid contribution -0.236 -0.539 -0.120 0.600 sum 7.027 1.721 3.512 8.042 Atomic orbital electron populations 1.21335 0.89692 1.01759 1.03994 1.23608 0.98841 0.94095 0.97158 0.85898 1.23967 1.03175 1.01001 0.91214 0.85346 1.18499 0.87423 0.83581 0.81806 1.90537 1.13707 1.73513 1.61504 1.43146 1.02448 1.25314 1.44628 1.18905 1.07954 0.88301 1.31493 0.90120 1.25168 0.98919 0.95771 0.93904 1.69881 1.27594 1.16593 1.32047 0.86236 0.82146 0.80978 0.77218 1.19611 1.20696 1.21346 1.22155 0.84223 0.96012 0.95533 1.22637 0.96090 0.99205 0.99071 1.22055 0.97455 0.99341 0.96951 1.22089 0.97913 0.98336 0.97714 1.22625 0.95447 0.99983 0.98125 1.20116 0.80802 0.95079 0.87721 1.93011 1.71920 1.65238 1.83081 1.92977 1.45610 1.92762 1.83624 0.90571 0.93744 0.89550 0.92715 0.91137 0.90240 0.92643 0.92611 0.92392 0.92721 0.92397 0.92708 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.03 8.40 37.16 0.31 -1.72 16 2 C -0.12 -2.01 6.39 -90.62 -0.58 -2.59 16 3 H 0.12 1.68 8.14 -51.93 -0.42 1.26 16 4 C -0.17 -3.33 4.99 -91.77 -0.46 -3.79 16 5 H 0.13 2.21 6.69 -51.93 -0.35 1.87 16 6 C 0.50 12.25 6.37 -10.99 -0.07 12.18 16 7 O -0.52 -14.19 10.74 5.55 0.06 -14.13 16 8 N -0.44 -10.48 2.58 -105.43 -0.27 -10.75 16 9 C -0.34 -8.92 7.72 -14.93 -0.12 -9.03 16 10 H 0.08 2.07 6.52 -52.48 -0.34 1.73 16 11 C 0.07 1.98 4.35 -17.47 -0.08 1.90 16 12 N -0.83 -23.43 11.67 55.50 0.65 -22.79 16 13 Si 0.91 21.47 29.59 -169.99 -5.03 16.44 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 C 0.13 2.46 3.19 -65.76 -0.21 2.25 16 18 C -0.13 -2.30 6.35 -25.07 -0.16 -2.46 16 19 C -0.12 -1.71 6.80 -25.61 -0.17 -1.89 16 20 C -0.12 -1.78 6.80 -25.61 -0.17 -1.95 16 21 C -0.12 -2.25 6.39 -24.89 -0.16 -2.41 16 22 C 0.20 3.69 5.13 -26.73 -0.14 3.55 16 23 F -0.15 -3.15 16.03 2.25 0.04 -3.11 16 24 F -0.17 -2.87 17.60 2.25 0.04 -2.83 16 25 H 0.08 1.58 6.22 -51.93 -0.32 1.25 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.09 1.78 7.26 -51.93 -0.38 1.41 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.07 1.27 5.59 -51.93 -0.29 0.98 16 30 H 0.08 1.52 6.37 -51.93 -0.33 1.19 16 31 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.80 7.26 -51.93 -0.38 1.43 16 LS Contribution 301.77 15.07 4.55 4.55 Total: -1.00 -29.71 301.77 -6.88 -36.59 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.90 Total: 1.99 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -2.00 Total: -5.95 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.38 Total: -33.53 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.06 Total: -14.13 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.08 Total: -5.95 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.71 -6.88 -36.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336448242.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.178 kcal (2) G-P(sol) polarization free energy of solvation -29.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds