Wall clock time and date at job start Mon Mar 30 2020 01:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 115.54993 * 2 1 4 4 C 1.53001 * 117.49788 * 214.33186 * 2 1 3 5 5 H 1.09001 * 117.50032 * 144.99549 * 4 2 1 6 6 C 1.50694 * 117.49922 * 359.97438 * 4 2 1 7 7 O 1.21291 * 120.00198 * 0.02562 * 6 4 2 8 8 N 1.34778 * 120.00219 * 180.02562 * 6 4 2 9 9 C 1.37104 * 120.00375 * 180.02562 * 8 6 4 10 10 H 1.08004 * 120.00101 * 222.65977 * 9 8 6 11 11 C 1.38952 * 119.99893 * 42.65360 * 9 8 6 12 12 N 1.31415 * 119.99751 * 19.22283 * 11 9 8 13 13 Si 1.86793 * 120.00029 * 199.21872 * 11 9 8 14 14 H 1.48507 * 109.47258 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47460 * 120.00317 * 13 11 9 16 16 H 1.48505 * 109.47198 * 240.00296 * 13 11 9 17 17 C 1.46501 * 120.00043 * 359.97438 * 8 6 4 18 18 C 1.54885 * 110.75873 * 125.09133 * 17 8 6 19 19 C 1.54266 * 104.31574 * 156.32583 * 18 17 8 20 20 C 1.53872 * 106.59531 * 336.32184 * 19 18 17 21 21 C 1.54267 * 106.60288 * 0.02562 * 20 19 18 22 22 C 1.53000 * 117.49986 * 145.70912 * 2 1 3 23 23 F 1.39895 * 117.50048 * 359.97438 * 22 2 1 24 24 F 1.39901 * 117.49805 * 214.97357 * 22 2 1 25 25 H 1.09005 * 109.47179 * 205.67242 * 1 2 3 26 26 H 1.08992 * 109.47112 * 325.66825 * 1 2 3 27 27 H 1.09002 * 109.47260 * 85.66735 * 1 2 3 28 28 H 0.96996 * 119.99603 * 179.97438 * 12 11 9 29 29 H 1.09000 * 110.81308 * 1.75409 * 17 8 6 30 30 H 1.09007 * 110.48524 * 37.57846 * 18 17 8 31 31 H 1.09009 * 110.48548 * 275.07189 * 18 17 8 32 32 H 1.08999 * 110.03003 * 95.61033 * 19 18 17 33 33 H 1.09001 * 110.03339 * 217.03985 * 19 18 17 34 34 H 1.09004 * 110.02911 * 119.28533 * 20 19 18 35 35 H 1.08995 * 110.03241 * 240.70922 * 20 19 18 36 36 H 1.08997 * 110.48491 * 142.28238 * 21 20 19 37 37 H 1.08996 * 110.48635 * 264.80071 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1207 -0.7654 5 1 3.1713 -0.8746 -1.2690 6 6 1.3720 -2.1404 -1.4611 7 8 0.1637 -2.0531 -1.4015 8 7 1.9415 -3.1494 -2.1496 9 6 1.1551 -4.0769 -2.7830 10 1 1.4085 -5.1255 -2.7312 11 6 0.0319 -3.6677 -3.4914 12 7 -0.0808 -2.4171 -3.8791 13 14 -1.3176 -4.8952 -3.8927 14 1 -0.9528 -6.2278 -3.3480 15 1 -2.5943 -4.4444 -3.2829 16 1 -1.4789 -4.9895 -5.3660 17 6 3.4009 -3.2547 -2.2221 18 6 3.8757 -4.6471 -1.7376 19 6 5.2489 -4.8385 -2.4138 20 6 5.2552 -3.9351 -3.6594 21 6 3.8858 -3.2258 -3.6963 22 6 2.2364 -1.1212 0.7646 23 9 1.4341 -2.0677 1.4107 24 9 3.4367 -0.8059 1.4106 25 1 -0.3634 -0.9263 0.4452 26 1 -0.3633 0.8486 0.5795 27 1 -0.3634 0.0776 -1.0247 28 1 -0.8647 -2.1316 -4.3739 29 1 3.8756 -2.4619 -1.6439 30 1 3.1798 -5.4213 -2.0612 31 1 3.9798 -4.6584 -0.6525 32 1 6.0455 -4.5403 -1.7321 33 1 5.3787 -5.8801 -2.7074 34 1 6.0549 -3.1984 -3.5823 35 1 5.3881 -4.5383 -4.5574 36 1 3.9978 -2.1978 -4.0410 37 1 3.1920 -3.7689 -4.3379 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336448242.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:46 Heat of formation + Delta-G solvation = -113.879773 kcal Electronic energy + Delta-G solvation = -22713.435355 eV Core-core repulsion = 19127.105337 eV Total energy + Delta-G solvation = -3586.330017 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.72718 -48.39689 -40.75764 -38.73666 -36.94988 -35.09477 -33.48304 -29.72935 -29.44379 -28.38916 -27.17613 -24.37332 -22.36775 -21.63217 -21.00821 -20.65065 -19.13680 -18.17396 -17.78512 -17.35216 -16.91572 -16.80462 -16.09930 -15.82795 -15.12936 -15.06729 -14.84470 -14.68249 -14.56032 -14.18593 -14.09204 -13.82755 -13.41652 -13.21084 -13.00625 -12.83837 -12.77243 -12.60520 -12.22107 -11.99754 -11.97443 -11.84727 -11.64274 -11.23653 -11.11869 -10.86892 -10.71142 -9.86986 -9.02630 -8.17719 -5.92115 1.36168 1.44246 1.51072 1.64658 1.97084 2.32984 2.79068 2.88095 3.21277 3.29859 3.59396 3.62823 3.89837 3.97889 4.08594 4.18874 4.29801 4.54712 4.60050 4.63179 4.69841 4.75491 4.82892 4.93363 4.94696 5.01471 5.06274 5.19993 5.27820 5.42192 5.54050 5.57148 5.58626 5.65008 6.24105 7.06127 7.21434 7.72052 8.35974 8.90252 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.013391 B = 0.010096 C = 0.006631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.490195 B = 2772.647692 C = 4221.575033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 H 0.171 0.829 4 C -0.185 4.185 5 H 0.154 0.846 6 C 0.486 3.514 7 O -0.558 6.558 8 N -0.450 5.450 9 C -0.345 4.345 10 H 0.078 0.922 11 C 0.028 3.972 12 N -0.860 5.860 13 Si 0.959 3.041 14 H -0.262 1.262 15 H -0.295 1.295 16 H -0.276 1.276 17 C 0.116 3.884 18 C -0.130 4.130 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.121 4.121 22 C 0.205 3.795 23 F -0.170 7.170 24 F -0.155 7.155 25 H 0.044 0.956 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.258 0.742 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.361 2.690 4.336 11.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.117 4.117 3 H 0.188 0.812 4 C -0.208 4.208 5 H 0.172 0.828 6 C 0.274 3.726 7 O -0.438 6.438 8 N -0.170 5.170 9 C -0.473 4.473 10 H 0.096 0.904 11 C -0.179 4.179 12 N -0.495 5.495 13 Si 0.785 3.215 14 H -0.186 1.186 15 H -0.222 1.222 16 H -0.202 1.202 17 C 0.012 3.988 18 C -0.169 4.169 19 C -0.149 4.149 20 C -0.151 4.151 21 C -0.159 4.159 22 C 0.168 3.832 23 F -0.151 7.151 24 F -0.136 7.136 25 H 0.063 0.937 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.654 2.805 4.297 10.933 hybrid contribution -0.937 -0.727 -0.266 1.216 sum 8.717 2.078 4.030 9.826 Atomic orbital electron populations 1.21206 0.90838 1.01783 1.02450 1.23843 0.98005 0.95386 0.94464 0.81173 1.23871 1.03909 1.01194 0.91782 0.82833 1.19288 0.87697 0.84171 0.81468 1.90511 1.15742 1.74703 1.62862 1.43410 1.04369 1.24938 1.44305 1.19059 1.08508 0.88834 1.30884 0.90446 1.25852 1.00741 0.97091 0.94243 1.69970 1.27826 1.18108 1.33615 0.85428 0.79124 0.79539 0.77432 1.18628 1.22234 1.20183 1.22448 0.81663 0.97852 0.96848 1.22596 0.97619 0.97070 0.99572 1.22032 0.95761 1.00223 0.96875 1.22053 0.95918 0.98741 0.98376 1.22541 0.97037 0.99903 0.96456 1.20059 0.81190 0.95247 0.86729 1.92979 1.72579 1.66193 1.83333 1.93007 1.44773 1.92554 1.83244 0.93734 0.89853 0.92472 0.93313 0.89272 0.92784 0.92261 0.90080 0.91138 0.90141 0.91412 0.92880 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.80 8.40 71.98 0.60 -3.19 16 2 C -0.10 -3.11 6.39 -10.79 -0.07 -3.18 16 3 H 0.17 3.83 8.14 -2.39 -0.02 3.81 16 4 C -0.19 -6.95 4.99 -11.54 -0.06 -7.00 16 5 H 0.15 4.88 6.69 -2.39 -0.02 4.87 16 6 C 0.49 24.12 6.37 87.66 0.56 24.68 16 7 O -0.56 -31.82 10.74 -3.06 -0.03 -31.86 16 8 N -0.45 -22.04 2.58 -605.87 -1.56 -23.60 16 9 C -0.35 -18.67 7.72 84.04 0.65 -18.02 16 10 H 0.08 4.12 6.52 -2.91 -0.02 4.10 16 11 C 0.03 1.54 4.35 84.93 0.37 1.91 16 12 N -0.86 -50.52 11.67 21.66 0.25 -50.26 16 13 Si 0.96 45.44 29.59 68.60 2.03 47.47 16 14 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 15 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 C 0.12 4.43 3.19 46.40 0.15 4.58 16 18 C -0.13 -4.40 6.35 31.67 0.20 -4.20 16 19 C -0.11 -2.81 6.80 31.32 0.21 -2.60 16 20 C -0.11 -2.94 6.80 31.32 0.21 -2.73 16 21 C -0.12 -4.32 6.39 31.78 0.20 -4.12 16 22 C 0.21 7.14 5.13 30.59 0.16 7.30 16 23 F -0.17 -6.99 16.03 44.97 0.72 -6.27 16 24 F -0.16 -4.76 17.60 44.97 0.79 -3.97 16 25 H 0.04 1.87 6.22 -2.38 -0.01 1.85 16 26 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.06 2.40 7.26 -2.39 -0.02 2.38 16 28 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 29 H 0.09 3.04 5.59 -2.39 -0.01 3.02 16 30 H 0.05 2.08 6.37 -2.38 -0.02 2.07 16 31 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 34 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.05 2.12 7.26 -2.39 -0.02 2.10 16 Total: -1.00 -67.56 301.77 6.47 -61.08 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 1.08 Total: 13.98 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 3.19 Total: -6.58 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -1.31 Total: -73.86 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.03 Total: -31.86 kcal Atomic # 9 Polarization: -11.75 SS G_CDS: 1.51 Total: -10.24 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -67.56 6.47 -61.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336448242.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.798 kcal (2) G-P(sol) polarization free energy of solvation -67.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds