Wall clock time and date at job start Mon Mar 30 2020 01:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 115.55852 * 2 1 4 4 C 1.53001 * 117.50017 * 145.68408 * 2 1 3 5 5 H 1.08994 * 117.51695 * 0.02562 * 4 2 1 6 6 C 1.50700 * 117.49733 * 214.98266 * 4 2 1 7 7 O 1.21289 * 120.00522 * 30.10219 * 6 4 2 8 8 N 1.34778 * 119.99665 * 210.10288 * 6 4 2 9 9 C 1.37102 * 120.00116 * 354.17011 * 8 6 4 10 10 H 1.07999 * 120.00147 * 135.27370 * 9 8 6 11 11 C 1.38952 * 119.99571 * 314.99148 * 9 8 6 12 12 N 1.31414 * 119.99446 * 156.26471 * 11 9 8 13 13 Si 1.86798 * 120.00460 * 336.27172 * 11 9 8 14 14 H 1.48497 * 109.47001 * 4.01274 * 13 11 9 15 15 H 1.48497 * 109.47362 * 124.01542 * 13 11 9 16 16 H 1.48503 * 109.46647 * 244.02112 * 13 11 9 17 17 C 1.46506 * 120.00088 * 174.16637 * 8 6 4 18 18 C 1.54259 * 110.03363 * 237.16773 * 17 8 6 19 19 C 1.54890 * 104.19542 * 217.10575 * 18 17 8 20 20 C 1.54890 * 102.74950 * 37.94189 * 19 18 17 21 21 C 1.53869 * 110.02899 * 119.99686 * 17 8 6 22 22 C 1.52998 * 117.50013 * 214.31091 * 2 1 3 23 23 F 1.39897 * 117.49894 * 145.01979 * 22 2 1 24 24 F 1.39895 * 117.51792 * 359.97438 * 22 2 1 25 25 H 1.09003 * 109.47040 * 274.31062 * 1 2 3 26 26 H 1.08998 * 109.47125 * 34.31377 * 1 2 3 27 27 H 1.08998 * 109.46501 * 154.31555 * 1 2 3 28 28 H 0.97003 * 120.00016 * 180.02562 * 12 11 9 29 29 H 1.09005 * 110.01182 * 358.61153 * 17 8 6 30 30 H 1.09003 * 110.48507 * 335.78543 * 18 17 8 31 31 H 1.08999 * 110.49027 * 98.42327 * 18 17 8 32 32 H 1.09000 * 110.75201 * 279.62787 * 19 18 17 33 33 H 1.09000 * 110.91499 * 156.33126 * 19 18 17 34 34 H 1.08995 * 110.48288 * 203.38383 * 20 19 18 35 35 H 1.08998 * 110.59839 * 80.78816 * 20 19 18 36 36 H 1.09004 * 110.03140 * 238.56680 * 21 17 8 37 37 H 1.08997 * 110.03877 * 359.95706 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 0.7651 5 1 1.6116 -1.8587 1.2682 6 6 3.5293 -0.7809 1.4609 7 8 3.7144 0.3413 1.8822 8 7 4.4798 -1.7239 1.6151 9 6 4.2256 -3.0200 1.2475 10 1 4.9625 -3.5771 0.6880 11 6 3.0222 -3.6188 1.5998 12 7 2.5632 -4.6323 0.9006 13 14 2.0570 -2.9830 3.0673 14 1 2.7331 -1.7829 3.6222 15 1 0.6824 -2.6220 2.6369 16 1 1.9884 -4.0386 4.1095 17 6 5.7848 -1.3639 2.1754 18 6 6.9070 -1.7444 1.1878 19 6 8.0618 -2.2353 2.0959 20 6 7.3143 -3.0021 3.2150 21 6 6.0436 -2.1636 3.4643 22 6 2.2365 -1.1210 -0.7650 23 9 3.4366 -0.8054 -1.4109 24 9 1.4345 -2.0680 -1.4106 25 1 -0.3633 0.0772 1.0248 26 1 -0.3633 0.8488 -0.5793 27 1 -0.3632 -0.9261 -0.4454 28 1 1.7229 -5.0501 1.1463 29 1 5.8182 -0.2950 2.3861 30 1 6.5768 -2.5440 0.5247 31 1 7.2190 -0.8737 0.6110 32 1 8.6142 -1.3911 2.5086 33 1 8.7293 -2.9022 1.5502 34 1 7.9235 -3.0491 4.1175 35 1 7.0497 -4.0055 2.8815 36 1 6.2037 -1.4827 4.3003 37 1 5.1981 -2.8189 3.6734 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336448246.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:51 Heat of formation + Delta-G solvation = -96.908416 kcal Electronic energy + Delta-G solvation = -22982.841367 eV Core-core repulsion = 19397.247283 eV Total energy + Delta-G solvation = -3585.594084 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -47.96751 -46.63466 -39.49720 -37.31208 -35.46393 -34.24205 -31.89295 -28.69133 -28.12498 -27.23768 -24.71163 -23.32628 -20.77021 -20.25518 -19.68262 -19.17121 -17.77787 -16.54781 -16.42552 -15.91276 -15.52255 -14.88687 -14.49592 -14.27761 -13.94254 -13.60991 -13.35031 -13.21018 -12.93603 -12.73295 -12.64429 -12.57048 -12.47138 -12.01593 -11.59501 -11.29297 -11.10241 -10.90395 -10.69484 -10.58045 -10.51219 -10.21256 -10.02392 -9.96213 -9.82067 -9.33053 -9.09717 -8.73559 -7.72457 -6.57981 -4.20913 2.95610 3.12301 3.23338 3.25969 3.46619 3.89841 4.02574 4.26175 4.74785 4.90100 4.99949 5.19701 5.23357 5.30296 5.44412 5.46334 5.81542 5.84953 5.88799 5.97385 6.10318 6.11333 6.12869 6.16924 6.21686 6.29727 6.38029 6.41543 6.46223 6.56418 6.81842 6.90194 6.97013 7.55774 7.67405 8.41073 8.83563 9.18735 9.59619 10.51195 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.019627 B = 0.009013 C = 0.008017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.237300 B = 3106.041593 C = 3491.745730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.139 4.139 3 H 0.133 0.867 4 C -0.161 4.161 5 H 0.136 0.864 6 C 0.510 3.490 7 O -0.588 6.588 8 N -0.447 5.447 9 C -0.340 4.340 10 H 0.106 0.894 11 C 0.075 3.925 12 N -0.840 5.840 13 Si 0.836 3.164 14 H -0.250 1.250 15 H -0.273 1.273 16 H -0.277 1.277 17 C 0.131 3.869 18 C -0.128 4.128 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.127 4.127 22 C 0.239 3.761 23 F -0.156 7.156 24 F -0.155 7.155 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.277 0.723 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.083 4.298 0.400 4.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.159 4.159 3 H 0.151 0.849 4 C -0.182 4.182 5 H 0.153 0.847 6 C 0.298 3.702 7 O -0.473 6.473 8 N -0.166 5.166 9 C -0.467 4.467 10 H 0.123 0.877 11 C -0.133 4.133 12 N -0.474 5.474 13 Si 0.661 3.339 14 H -0.173 1.173 15 H -0.200 1.200 16 H -0.204 1.204 17 C 0.028 3.972 18 C -0.166 4.166 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.165 4.165 22 C 0.202 3.798 23 F -0.137 7.137 24 F -0.135 7.135 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.092 4.647 0.527 4.803 hybrid contribution -0.619 -0.289 0.686 0.968 sum 0.473 4.358 1.213 4.549 Atomic orbital electron populations 1.21376 0.91099 1.03057 1.02851 1.23806 0.97063 0.96335 0.98676 0.84905 1.23684 0.99725 1.01278 0.93544 0.84697 1.19071 0.84778 0.84355 0.81988 1.90535 1.80587 1.21971 1.54196 1.43737 1.10944 1.07858 1.54031 1.18892 1.04606 0.87912 1.35294 0.87704 1.25519 0.96501 0.95172 0.96142 1.69764 1.19689 1.22394 1.35518 0.87512 0.80410 0.80745 0.85229 1.17309 1.19989 1.20382 1.21698 0.84101 0.99120 0.92321 1.22655 0.94508 1.01362 0.98117 1.22420 0.97167 0.99220 0.97027 1.22268 0.95962 0.99552 0.97679 1.22386 0.98534 0.98700 0.96918 1.19631 0.80518 0.92397 0.87291 1.92994 1.45111 1.92407 1.83164 1.92987 1.71830 1.65566 1.83114 0.91149 0.91187 0.91340 0.91269 0.89721 0.89854 0.92433 0.92207 0.92057 0.92687 0.91239 0.92717 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 10.16 37.16 0.38 -1.51 16 2 C -0.14 -2.61 5.91 -90.62 -0.54 -3.14 16 3 H 0.13 2.39 7.98 -51.93 -0.41 1.97 16 4 C -0.16 -3.67 3.44 -91.77 -0.32 -3.98 16 5 H 0.14 3.20 3.22 -51.93 -0.17 3.03 16 6 C 0.51 12.54 4.79 -10.98 -0.05 12.49 16 7 O -0.59 -15.17 16.04 5.55 0.09 -15.08 16 8 N -0.45 -10.68 2.02 -106.54 -0.21 -10.89 16 9 C -0.34 -8.59 7.95 -14.93 -0.12 -8.71 16 10 H 0.11 2.81 6.77 -52.49 -0.36 2.45 16 11 C 0.08 1.94 4.17 -17.47 -0.07 1.86 16 12 N -0.84 -22.40 13.96 55.50 0.77 -21.63 16 13 Si 0.84 19.79 23.67 -169.99 -4.02 15.77 16 14 H -0.25 -6.16 6.37 56.52 0.36 -5.80 16 15 H -0.27 -6.22 6.71 56.52 0.38 -5.84 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 C 0.13 2.73 3.29 -66.82 -0.22 2.51 16 18 C -0.13 -2.33 6.41 -25.08 -0.16 -2.49 16 19 C -0.12 -1.80 6.91 -24.74 -0.17 -1.97 16 20 C -0.12 -1.85 6.83 -25.07 -0.17 -2.03 16 21 C -0.13 -2.39 6.28 -25.61 -0.16 -2.55 16 22 C 0.24 5.16 5.13 -26.73 -0.14 5.02 16 23 F -0.16 -3.51 17.13 2.25 0.04 -3.47 16 24 F -0.15 -3.37 16.50 2.25 0.04 -3.33 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 1.04 7.10 -51.93 -0.37 0.67 16 28 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.08 1.82 6.96 -51.93 -0.36 1.46 16 30 H 0.08 1.67 6.29 -51.93 -0.33 1.34 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.60 6.90 -51.93 -0.36 1.24 16 LS Contribution 299.42 15.07 4.51 4.51 Total: -1.00 -28.22 299.42 -5.46 -33.68 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -4.93 Total: 4.95 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -1.74 Total: -4.50 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.56 Total: -32.52 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.09 Total: -15.08 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.08 Total: -6.80 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.02 Total: 15.77 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.22 -5.46 -33.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336448246.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.230 kcal (2) G-P(sol) polarization free energy of solvation -28.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds