Wall clock time and date at job start Mon Mar 30 2020 01:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 115.55852 * 2 1 4 4 C 1.53001 * 117.50017 * 145.68408 * 2 1 3 5 5 H 1.08994 * 117.51695 * 0.02562 * 4 2 1 6 6 C 1.50700 * 117.49733 * 214.98266 * 4 2 1 7 7 O 1.21289 * 120.00522 * 30.10219 * 6 4 2 8 8 N 1.34778 * 119.99665 * 210.10288 * 6 4 2 9 9 C 1.37102 * 120.00116 * 354.17011 * 8 6 4 10 10 H 1.07999 * 120.00147 * 135.27370 * 9 8 6 11 11 C 1.38952 * 119.99571 * 314.99148 * 9 8 6 12 12 N 1.31414 * 119.99446 * 156.26471 * 11 9 8 13 13 Si 1.86798 * 120.00460 * 336.27172 * 11 9 8 14 14 H 1.48497 * 109.47001 * 4.01274 * 13 11 9 15 15 H 1.48497 * 109.47362 * 124.01542 * 13 11 9 16 16 H 1.48503 * 109.46647 * 244.02112 * 13 11 9 17 17 C 1.46506 * 120.00088 * 174.16637 * 8 6 4 18 18 C 1.54259 * 110.03363 * 237.16773 * 17 8 6 19 19 C 1.54890 * 104.19542 * 217.10575 * 18 17 8 20 20 C 1.54890 * 102.74950 * 37.94189 * 19 18 17 21 21 C 1.53869 * 110.02899 * 119.99686 * 17 8 6 22 22 C 1.52998 * 117.50013 * 214.31091 * 2 1 3 23 23 F 1.39897 * 117.49894 * 145.01979 * 22 2 1 24 24 F 1.39895 * 117.51792 * 359.97438 * 22 2 1 25 25 H 1.09003 * 109.47040 * 274.31062 * 1 2 3 26 26 H 1.08998 * 109.47125 * 34.31377 * 1 2 3 27 27 H 1.08998 * 109.46501 * 154.31555 * 1 2 3 28 28 H 0.97003 * 120.00016 * 180.02562 * 12 11 9 29 29 H 1.09005 * 110.01182 * 358.61153 * 17 8 6 30 30 H 1.09003 * 110.48507 * 335.78543 * 18 17 8 31 31 H 1.08999 * 110.49027 * 98.42327 * 18 17 8 32 32 H 1.09000 * 110.75201 * 279.62787 * 19 18 17 33 33 H 1.09000 * 110.91499 * 156.33126 * 19 18 17 34 34 H 1.08995 * 110.48288 * 203.38383 * 20 19 18 35 35 H 1.08998 * 110.59839 * 80.78816 * 20 19 18 36 36 H 1.09004 * 110.03140 * 238.56680 * 21 17 8 37 37 H 1.08997 * 110.03877 * 359.95706 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 0.7651 5 1 1.6116 -1.8587 1.2682 6 6 3.5293 -0.7809 1.4609 7 8 3.7144 0.3413 1.8822 8 7 4.4798 -1.7239 1.6151 9 6 4.2256 -3.0200 1.2475 10 1 4.9625 -3.5771 0.6880 11 6 3.0222 -3.6188 1.5998 12 7 2.5632 -4.6323 0.9006 13 14 2.0570 -2.9830 3.0673 14 1 2.7331 -1.7829 3.6222 15 1 0.6824 -2.6220 2.6369 16 1 1.9884 -4.0386 4.1095 17 6 5.7848 -1.3639 2.1754 18 6 6.9070 -1.7444 1.1878 19 6 8.0618 -2.2353 2.0959 20 6 7.3143 -3.0021 3.2150 21 6 6.0436 -2.1636 3.4643 22 6 2.2365 -1.1210 -0.7650 23 9 3.4366 -0.8054 -1.4109 24 9 1.4345 -2.0680 -1.4106 25 1 -0.3633 0.0772 1.0248 26 1 -0.3633 0.8488 -0.5793 27 1 -0.3632 -0.9261 -0.4454 28 1 1.7229 -5.0501 1.1463 29 1 5.8182 -0.2950 2.3861 30 1 6.5768 -2.5440 0.5247 31 1 7.2190 -0.8737 0.6110 32 1 8.6142 -1.3911 2.5086 33 1 8.7293 -2.9022 1.5502 34 1 7.9235 -3.0491 4.1175 35 1 7.0497 -4.0055 2.8815 36 1 6.2037 -1.4827 4.3003 37 1 5.1981 -2.8189 3.6734 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336448246.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:51 Heat of formation + Delta-G solvation = -112.603429 kcal Electronic energy + Delta-G solvation = -22983.521954 eV Core-core repulsion = 19397.247283 eV Total energy + Delta-G solvation = -3586.274671 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.69021 -48.36886 -41.30008 -38.88187 -37.13724 -36.07101 -33.82818 -30.10625 -29.55914 -28.75558 -26.64889 -25.03062 -22.37428 -21.66715 -21.33510 -20.92704 -19.53623 -18.29288 -18.25575 -17.62606 -17.20056 -16.51598 -16.22203 -16.10636 -15.54828 -15.38297 -15.04992 -14.89358 -14.65112 -14.47243 -14.17852 -14.03004 -13.97677 -13.65424 -13.06247 -12.94248 -12.82198 -12.52289 -12.41260 -12.10662 -11.89585 -11.87999 -11.57045 -11.47374 -11.36487 -11.08144 -10.99643 -10.57653 -9.62540 -8.59510 -6.23142 1.05743 1.19585 1.29854 1.40736 1.84373 2.03040 2.23386 2.49401 2.84087 3.23463 3.40258 3.59573 3.76299 3.83976 3.98844 4.08998 4.13599 4.43683 4.52832 4.56910 4.62100 4.68618 4.69588 4.74751 4.88119 4.90994 4.99851 5.11379 5.18596 5.20659 5.35801 5.36672 5.54327 5.62688 5.79464 6.38438 6.84917 7.24649 7.67097 8.53532 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.019627 B = 0.009013 C = 0.008017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.237300 B = 3106.041593 C = 3491.745730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 H 0.143 0.857 4 C -0.192 4.192 5 H 0.126 0.874 6 C 0.500 3.500 7 O -0.606 6.606 8 N -0.451 5.451 9 C -0.334 4.334 10 H 0.082 0.918 11 C 0.053 3.947 12 N -0.871 5.871 13 Si 0.878 3.122 14 H -0.266 1.266 15 H -0.257 1.257 16 H -0.273 1.273 17 C 0.118 3.882 18 C -0.126 4.126 19 C -0.108 4.108 20 C -0.111 4.111 21 C -0.127 4.127 22 C 0.222 3.778 23 F -0.167 7.167 24 F -0.159 7.159 25 H 0.082 0.918 26 H 0.107 0.893 27 H 0.064 0.936 28 H 0.282 0.718 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.094 5.302 1.055 5.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.120 4.120 3 H 0.161 0.839 4 C -0.214 4.214 5 H 0.143 0.857 6 C 0.289 3.711 7 O -0.493 6.493 8 N -0.170 5.170 9 C -0.462 4.462 10 H 0.100 0.900 11 C -0.154 4.154 12 N -0.506 5.506 13 Si 0.703 3.297 14 H -0.191 1.191 15 H -0.183 1.183 16 H -0.199 1.199 17 C 0.015 3.985 18 C -0.164 4.164 19 C -0.146 4.146 20 C -0.149 4.149 21 C -0.165 4.165 22 C 0.185 3.815 23 F -0.148 7.148 24 F -0.139 7.139 25 H 0.101 0.899 26 H 0.126 0.874 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.106 5.638 1.182 5.866 hybrid contribution -0.568 -0.586 0.450 0.932 sum 0.537 5.052 1.632 5.336 Atomic orbital electron populations 1.21524 0.87813 1.04634 1.04349 1.24019 0.99324 0.95030 0.93634 0.83882 1.23722 0.99637 1.03963 0.94066 0.85658 1.19444 0.85526 0.84213 0.81907 1.90499 1.81245 1.22494 1.55075 1.43880 1.12027 1.07238 1.53845 1.18643 1.04135 0.88291 1.35087 0.90034 1.25818 0.97011 0.95266 0.97294 1.69812 1.20533 1.23653 1.36604 0.86861 0.80215 0.79620 0.83049 1.19084 1.18272 1.19902 1.22003 0.83449 0.98992 0.94065 1.22612 0.95055 1.00838 0.97911 1.22402 0.96063 1.00171 0.95929 1.22246 0.94971 0.98242 0.99420 1.22389 0.99053 0.98715 0.96384 1.19947 0.80882 0.94194 0.86508 1.92963 1.46049 1.92493 1.83268 1.92970 1.71759 1.66106 1.83093 0.89945 0.87422 0.91665 0.90772 0.90577 0.92387 0.91725 0.89809 0.90199 0.89522 0.92654 0.91003 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 10.16 71.98 0.73 -2.64 16 2 C -0.10 -3.59 5.91 -10.79 -0.06 -3.65 16 3 H 0.14 4.82 7.98 -2.39 -0.02 4.80 16 4 C -0.19 -8.69 3.44 -11.54 -0.04 -8.73 16 5 H 0.13 5.88 3.22 -2.39 -0.01 5.87 16 6 C 0.50 24.73 4.79 87.66 0.42 25.15 16 7 O -0.61 -31.28 16.04 -3.06 -0.05 -31.33 16 8 N -0.45 -21.93 2.02 -609.38 -1.23 -23.15 16 9 C -0.33 -17.33 7.95 84.04 0.67 -16.66 16 10 H 0.08 4.57 6.77 -2.91 -0.02 4.55 16 11 C 0.05 2.75 4.17 84.93 0.35 3.10 16 12 N -0.87 -47.11 13.96 21.66 0.30 -46.81 16 13 Si 0.88 40.97 23.67 68.60 1.62 42.60 16 14 H -0.27 -13.11 6.37 99.48 0.63 -12.47 16 15 H -0.26 -11.21 6.71 99.48 0.67 -10.54 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 17 C 0.12 4.91 3.29 45.71 0.15 5.06 16 18 C -0.13 -4.54 6.41 31.67 0.20 -4.33 16 19 C -0.11 -2.97 6.91 31.89 0.22 -2.75 16 20 C -0.11 -3.32 6.83 31.67 0.22 -3.10 16 21 C -0.13 -4.70 6.28 31.32 0.20 -4.50 16 22 C 0.22 9.51 5.13 30.60 0.16 9.67 16 23 F -0.17 -7.58 17.13 44.97 0.77 -6.81 16 24 F -0.16 -6.89 16.50 44.97 0.74 -6.15 16 25 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.06 1.81 7.10 -2.39 -0.02 1.79 16 28 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.08 3.27 6.96 -2.38 -0.02 3.25 16 30 H 0.06 2.38 6.29 -2.39 -0.02 2.36 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 37 H 0.05 2.05 6.90 -2.39 -0.02 2.03 16 Total: -1.00 -61.66 299.42 6.34 -55.32 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.97 Total: 19.70 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 3.21 Total: -3.38 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -0.93 Total: -69.96 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.05 Total: -31.33 kcal Atomic # 9 Polarization: -14.47 SS G_CDS: 1.51 Total: -12.96 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 1.62 Total: 42.60 kcal Total: -61.66 6.34 -55.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336448246.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.285 kcal (2) G-P(sol) polarization free energy of solvation -61.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds