Wall clock time and date at job start Mon Mar 30 2020 01:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 115.56337 * 2 1 4 4 C 1.52995 * 117.50125 * 145.69580 * 2 1 3 5 5 H 1.09004 * 117.51642 * 214.96644 * 4 2 1 6 6 C 1.50699 * 117.50197 * 359.97438 * 4 2 1 7 7 O 1.21297 * 119.99503 * 0.02562 * 6 4 2 8 8 N 1.34772 * 120.00175 * 180.02562 * 6 4 2 9 9 C 1.37101 * 120.00139 * 359.97438 * 8 6 4 10 10 H 1.08003 * 119.99634 * 128.71750 * 9 8 6 11 11 C 1.38945 * 120.00475 * 308.72396 * 9 8 6 12 12 N 1.31414 * 119.99402 * 337.31770 * 11 9 8 13 13 Si 1.86794 * 120.00478 * 157.59436 * 11 9 8 14 14 H 1.48501 * 109.47403 * 179.72315 * 13 11 9 15 15 H 1.48496 * 109.47200 * 299.72377 * 13 11 9 16 16 H 1.48504 * 109.46939 * 59.72219 * 13 11 9 17 17 C 1.46497 * 119.99903 * 180.02562 * 8 6 4 18 18 C 1.54267 * 110.02985 * 242.42848 * 17 8 6 19 19 C 1.54964 * 104.15991 * 217.13498 * 18 17 8 20 20 C 1.54889 * 102.77850 * 37.88674 * 19 18 17 21 21 C 1.53879 * 110.03701 * 125.21284 * 17 8 6 22 22 C 1.53001 * 117.49617 * 214.32060 * 2 1 3 23 23 F 1.39908 * 117.49807 * 145.01442 * 22 2 1 24 24 F 1.39897 * 117.52122 * 359.97438 * 22 2 1 25 25 H 1.09008 * 109.47149 * 274.30412 * 1 2 3 26 26 H 1.08998 * 109.47892 * 34.30321 * 1 2 3 27 27 H 1.08995 * 109.47460 * 154.30954 * 1 2 3 28 28 H 0.97003 * 119.99731 * 176.63030 * 12 11 9 29 29 H 1.09002 * 110.02035 * 3.81501 * 17 8 6 30 30 H 1.09000 * 110.48847 * 335.78771 * 18 17 8 31 31 H 1.09007 * 110.48641 * 98.42685 * 18 17 8 32 32 H 1.09007 * 110.72051 * 279.57037 * 19 18 17 33 33 H 1.09003 * 110.76617 * 156.22583 * 19 18 17 34 34 H 1.08993 * 110.48680 * 203.40241 * 20 19 18 35 35 H 1.09005 * 110.59592 * 80.81989 * 20 19 18 36 36 H 1.09001 * 110.03182 * 238.56751 * 21 17 8 37 37 H 1.08997 * 110.02586 * 359.97438 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7648 5 1 3.1717 -0.8756 1.2681 6 6 1.3721 -2.1404 1.4611 7 8 0.1638 -2.0531 1.4015 8 7 1.9417 -3.1491 2.1499 9 6 3.3075 -3.2481 2.2168 10 1 3.7947 -3.3566 3.1746 11 6 4.0649 -3.2087 1.0526 12 7 3.5156 -3.5219 -0.0994 13 14 5.8658 -2.7182 1.1259 14 1 6.4466 -2.7611 -0.2401 15 1 5.9820 -1.3414 1.6701 16 1 6.6004 -3.6620 2.0061 17 6 1.1015 -4.1404 2.8262 18 6 1.3474 -4.0912 4.3484 19 6 1.2658 -5.5733 4.7936 20 6 1.9474 -6.3213 3.6211 21 6 1.4823 -5.5578 2.3639 22 6 2.2363 -1.1209 -0.7652 23 9 3.4365 -0.8052 -1.4113 24 9 1.4343 -2.0679 -1.4110 25 1 -0.3634 0.0771 1.0248 26 1 -0.3635 0.8489 -0.5791 27 1 -0.3634 -0.9260 -0.4455 28 1 4.0302 -3.4474 -0.9183 29 1 0.0504 -3.9474 2.6115 30 1 2.3351 -3.6826 4.5623 31 1 0.5746 -3.5010 4.8409 32 1 0.2274 -5.8872 4.9006 33 1 1.8150 -5.7286 5.7223 34 1 1.6123 -7.3578 3.5837 35 1 3.0323 -6.2753 3.7159 36 1 0.6159 -6.0530 1.9256 37 1 2.2921 -5.5080 1.6360 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336448248.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:54 Heat of formation + Delta-G solvation = -108.118837 kcal Electronic energy + Delta-G solvation = -23095.588906 eV Core-core repulsion = 19509.508701 eV Total energy + Delta-G solvation = -3586.080204 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -47.71610 -46.36154 -39.14943 -37.17953 -34.91055 -34.16282 -31.40159 -28.13706 -27.95225 -27.01635 -24.78516 -22.92698 -20.54985 -20.11858 -19.27126 -19.15553 -17.26373 -16.49190 -15.71361 -15.48004 -15.25715 -14.94170 -14.57297 -14.25887 -13.57563 -13.21371 -13.01361 -12.96989 -12.66895 -12.55627 -12.43356 -12.11874 -11.69405 -11.58891 -11.31172 -11.16208 -11.13127 -10.84399 -10.64130 -10.50875 -10.43750 -10.34390 -9.93179 -9.85921 -9.65398 -9.06428 -8.74763 -8.27277 -7.36736 -6.41111 -4.21602 3.11530 3.21021 3.24352 3.55302 3.72771 4.06038 4.47704 4.61422 4.99828 5.06041 5.30295 5.37913 5.41465 5.59919 5.62551 5.72284 6.11845 6.17416 6.22148 6.27118 6.28864 6.32251 6.37886 6.43577 6.49638 6.52660 6.54027 6.65837 6.73827 6.94806 7.02651 7.09045 7.30308 7.42957 7.94756 8.60626 8.89240 9.52194 9.95078 10.60921 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.017521 B = 0.009759 C = 0.007275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.664448 B = 2868.435287 C = 3848.036316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.152 4.152 3 H 0.118 0.882 4 C -0.135 4.135 5 H 0.134 0.866 6 C 0.537 3.463 7 O -0.597 6.597 8 N -0.433 5.433 9 C -0.350 4.350 10 H 0.083 0.917 11 C 0.059 3.941 12 N -0.838 5.838 13 Si 0.895 3.105 14 H -0.282 1.282 15 H -0.270 1.270 16 H -0.272 1.272 17 C 0.135 3.865 18 C -0.128 4.128 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.124 4.124 22 C 0.245 3.755 23 F -0.173 7.173 24 F -0.148 7.148 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.273 0.727 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.084 1.933 3.287 3.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.172 4.172 3 H 0.136 0.864 4 C -0.157 4.157 5 H 0.152 0.848 6 C 0.327 3.673 7 O -0.482 6.482 8 N -0.151 5.151 9 C -0.478 4.478 10 H 0.101 0.899 11 C -0.151 4.151 12 N -0.471 5.471 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.195 1.195 16 H -0.197 1.197 17 C 0.031 3.969 18 C -0.167 4.167 19 C -0.159 4.159 20 C -0.154 4.154 21 C -0.162 4.162 22 C 0.207 3.793 23 F -0.153 7.153 24 F -0.128 7.128 25 H 0.094 0.906 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.617 1.827 3.017 3.880 hybrid contribution 1.435 -0.011 -0.377 1.484 sum -0.181 1.815 2.640 3.209 Atomic orbital electron populations 1.21260 0.90388 1.01636 1.02954 1.23882 0.98383 0.94803 1.00123 0.86388 1.23258 1.02031 0.97627 0.92740 0.84845 1.18898 0.86350 0.81470 0.80620 1.90515 1.14688 1.76907 1.66121 1.43315 1.05700 1.20092 1.46000 1.19066 0.80125 1.55434 0.93183 0.89895 1.25531 0.99202 0.94774 0.95639 1.70045 1.38837 1.39462 0.98717 0.86515 0.83907 0.79744 0.77813 1.20683 1.19531 1.19694 1.21591 0.95513 0.88902 0.90907 1.22675 1.01976 0.95712 0.96326 1.22442 0.99765 0.96001 0.97701 1.22266 1.00314 0.97652 0.95211 1.22350 1.01453 0.94387 0.98037 1.19505 0.79771 0.92323 0.87694 1.92936 1.46192 1.92613 1.83597 1.92983 1.71551 1.65334 1.82917 0.90600 0.93953 0.90734 0.91676 0.90339 0.90675 0.92759 0.92303 0.92460 0.93046 0.91728 0.93451 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 8.40 37.15 0.31 -1.63 16 2 C -0.15 -2.90 6.39 -90.62 -0.58 -3.48 16 3 H 0.12 1.86 8.14 -51.93 -0.42 1.44 16 4 C -0.13 -3.01 3.89 -91.77 -0.36 -3.37 16 5 H 0.13 2.95 6.97 -51.93 -0.36 2.58 16 6 C 0.54 13.18 6.56 -10.99 -0.07 13.11 16 7 O -0.60 -15.23 12.46 5.54 0.07 -15.16 16 8 N -0.43 -10.32 2.39 -106.54 -0.25 -10.58 16 9 C -0.35 -8.37 6.89 -14.93 -0.10 -8.47 16 10 H 0.08 1.95 6.97 -52.48 -0.37 1.58 16 11 C 0.06 1.41 3.40 -17.47 -0.06 1.35 16 12 N -0.84 -21.59 10.54 55.50 0.58 -21.01 16 13 Si 0.89 19.15 29.54 -169.99 -5.02 14.13 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 16 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 17 C 0.13 2.88 3.29 -66.81 -0.22 2.66 16 18 C -0.13 -2.33 6.43 -25.03 -0.16 -2.49 16 19 C -0.12 -1.87 6.91 -24.70 -0.17 -2.04 16 20 C -0.12 -1.95 6.83 -25.08 -0.17 -2.12 16 21 C -0.12 -2.51 6.25 -25.61 -0.16 -2.67 16 22 C 0.24 5.44 3.47 -26.73 -0.09 5.35 16 23 F -0.17 -3.79 17.60 2.25 0.04 -3.75 16 24 F -0.15 -3.62 15.62 2.25 0.04 -3.59 16 25 H 0.08 1.44 7.26 -51.92 -0.38 1.06 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.57 6.22 -51.93 -0.32 1.24 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.08 1.78 6.95 -51.93 -0.36 1.42 16 30 H 0.07 1.43 6.65 -51.93 -0.35 1.08 16 31 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 32 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 2.20 7.17 -51.93 -0.37 1.83 16 LS Contribution 299.79 15.07 4.52 4.52 Total: -1.00 -26.82 299.79 -6.89 -33.71 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.02 Total: 5.52 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -1.83 Total: -3.79 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.33 Total: -31.58 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.07 Total: -15.16 kcal Atomic # 9 Polarization: -7.41 SS G_CDS: 0.07 Total: -7.34 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -26.82 -6.89 -33.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336448248.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.410 kcal (2) G-P(sol) polarization free energy of solvation -26.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds