Wall clock time and date at job start Mon Mar 30 2020 01:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 115.56337 * 2 1 4 4 C 1.52995 * 117.50125 * 145.69580 * 2 1 3 5 5 H 1.09004 * 117.51642 * 214.96644 * 4 2 1 6 6 C 1.50699 * 117.50197 * 359.97438 * 4 2 1 7 7 O 1.21297 * 119.99503 * 0.02562 * 6 4 2 8 8 N 1.34772 * 120.00175 * 180.02562 * 6 4 2 9 9 C 1.37101 * 120.00139 * 359.97438 * 8 6 4 10 10 H 1.08003 * 119.99634 * 128.71750 * 9 8 6 11 11 C 1.38945 * 120.00475 * 308.72396 * 9 8 6 12 12 N 1.31414 * 119.99402 * 337.31770 * 11 9 8 13 13 Si 1.86794 * 120.00478 * 157.59436 * 11 9 8 14 14 H 1.48501 * 109.47403 * 179.72315 * 13 11 9 15 15 H 1.48496 * 109.47200 * 299.72377 * 13 11 9 16 16 H 1.48504 * 109.46939 * 59.72219 * 13 11 9 17 17 C 1.46497 * 119.99903 * 180.02562 * 8 6 4 18 18 C 1.54267 * 110.02985 * 242.42848 * 17 8 6 19 19 C 1.54964 * 104.15991 * 217.13498 * 18 17 8 20 20 C 1.54889 * 102.77850 * 37.88674 * 19 18 17 21 21 C 1.53879 * 110.03701 * 125.21284 * 17 8 6 22 22 C 1.53001 * 117.49617 * 214.32060 * 2 1 3 23 23 F 1.39908 * 117.49807 * 145.01442 * 22 2 1 24 24 F 1.39897 * 117.52122 * 359.97438 * 22 2 1 25 25 H 1.09008 * 109.47149 * 274.30412 * 1 2 3 26 26 H 1.08998 * 109.47892 * 34.30321 * 1 2 3 27 27 H 1.08995 * 109.47460 * 154.30954 * 1 2 3 28 28 H 0.97003 * 119.99731 * 176.63030 * 12 11 9 29 29 H 1.09002 * 110.02035 * 3.81501 * 17 8 6 30 30 H 1.09000 * 110.48847 * 335.78771 * 18 17 8 31 31 H 1.09007 * 110.48641 * 98.42685 * 18 17 8 32 32 H 1.09007 * 110.72051 * 279.57037 * 19 18 17 33 33 H 1.09003 * 110.76617 * 156.22583 * 19 18 17 34 34 H 1.08993 * 110.48680 * 203.40241 * 20 19 18 35 35 H 1.09005 * 110.59592 * 80.81989 * 20 19 18 36 36 H 1.09001 * 110.03182 * 238.56751 * 21 17 8 37 37 H 1.08997 * 110.02586 * 359.97438 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7648 5 1 3.1717 -0.8756 1.2681 6 6 1.3721 -2.1404 1.4611 7 8 0.1638 -2.0531 1.4015 8 7 1.9417 -3.1491 2.1499 9 6 3.3075 -3.2481 2.2168 10 1 3.7947 -3.3566 3.1746 11 6 4.0649 -3.2087 1.0526 12 7 3.5156 -3.5219 -0.0994 13 14 5.8658 -2.7182 1.1259 14 1 6.4466 -2.7611 -0.2401 15 1 5.9820 -1.3414 1.6701 16 1 6.6004 -3.6620 2.0061 17 6 1.1015 -4.1404 2.8262 18 6 1.3474 -4.0912 4.3484 19 6 1.2658 -5.5733 4.7936 20 6 1.9474 -6.3213 3.6211 21 6 1.4823 -5.5578 2.3639 22 6 2.2363 -1.1209 -0.7652 23 9 3.4365 -0.8052 -1.4113 24 9 1.4343 -2.0679 -1.4110 25 1 -0.3634 0.0771 1.0248 26 1 -0.3635 0.8489 -0.5791 27 1 -0.3634 -0.9260 -0.4455 28 1 4.0302 -3.4474 -0.9183 29 1 0.0504 -3.9474 2.6115 30 1 2.3351 -3.6826 4.5623 31 1 0.5746 -3.5010 4.8409 32 1 0.2274 -5.8872 4.9006 33 1 1.8150 -5.7286 5.7223 34 1 1.6123 -7.3578 3.5837 35 1 3.0323 -6.2753 3.7159 36 1 0.6159 -6.0530 1.9256 37 1 2.2921 -5.5080 1.6360 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336448248.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:54 Heat of formation + Delta-G solvation = -121.177853 kcal Electronic energy + Delta-G solvation = -23096.155187 eV Core-core repulsion = 19509.508701 eV Total energy + Delta-G solvation = -3586.646486 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.47105 -48.14840 -40.92651 -38.78639 -36.59546 -35.96798 -33.24380 -29.70324 -29.44580 -28.61804 -26.64555 -24.64688 -22.20607 -21.56055 -21.03192 -20.79462 -19.01564 -18.25143 -17.45596 -17.21795 -17.07999 -16.70785 -16.11385 -15.89770 -15.28572 -14.86076 -14.73731 -14.68988 -14.39303 -14.18836 -14.13216 -13.74295 -13.42379 -13.22870 -12.96301 -12.88876 -12.77772 -12.45421 -12.27679 -12.14364 -11.84275 -11.82850 -11.52373 -11.35404 -11.30091 -10.80713 -10.53434 -10.10455 -9.22214 -8.28428 -6.13164 1.40378 1.46507 1.53742 1.75907 2.06133 2.28946 2.71206 2.86182 3.20892 3.43286 3.75805 3.87146 3.88353 3.96929 4.19043 4.25644 4.49261 4.65390 4.69948 4.71399 4.79410 4.81407 4.88435 4.92284 4.98153 5.02737 5.11417 5.17942 5.25564 5.44969 5.47868 5.53291 5.57975 5.61410 6.10180 6.71609 7.01940 7.64544 8.08847 8.72004 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.017521 B = 0.009759 C = 0.007275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.664448 B = 2868.435287 C = 3848.036316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.116 4.116 3 H 0.162 0.838 4 C -0.153 4.153 5 H 0.134 0.866 6 C 0.521 3.479 7 O -0.618 6.618 8 N -0.441 5.441 9 C -0.351 4.351 10 H 0.088 0.912 11 C 0.030 3.970 12 N -0.866 5.866 13 Si 0.945 3.055 14 H -0.293 1.293 15 H -0.258 1.258 16 H -0.264 1.264 17 C 0.123 3.877 18 C -0.122 4.122 19 C -0.109 4.109 20 C -0.109 4.109 21 C -0.121 4.121 22 C 0.224 3.776 23 F -0.174 7.174 24 F -0.169 7.169 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.041 0.959 28 H 0.265 0.735 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.621 2.613 4.763 5.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.136 4.136 3 H 0.180 0.820 4 C -0.175 4.175 5 H 0.151 0.849 6 C 0.311 3.689 7 O -0.505 6.505 8 N -0.158 5.158 9 C -0.479 4.479 10 H 0.106 0.894 11 C -0.177 4.177 12 N -0.500 5.500 13 Si 0.769 3.231 14 H -0.219 1.219 15 H -0.182 1.182 16 H -0.188 1.188 17 C 0.019 3.981 18 C -0.160 4.160 19 C -0.146 4.146 20 C -0.147 4.147 21 C -0.159 4.159 22 C 0.187 3.813 23 F -0.154 7.154 24 F -0.149 7.149 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.147 2.498 4.523 5.293 hybrid contribution 1.240 -0.264 -0.846 1.524 sum 0.093 2.234 3.677 4.303 Atomic orbital electron populations 1.21222 0.89871 1.01727 1.02996 1.24127 0.98683 0.95266 0.95487 0.82009 1.23247 1.02503 0.99105 0.92634 0.84858 1.19364 0.86540 0.82140 0.80863 1.90488 1.15478 1.77628 1.66935 1.43546 1.06088 1.20326 1.45861 1.19228 0.80295 1.55005 0.93353 0.89439 1.26099 1.02117 0.94394 0.95114 1.70173 1.39919 1.40839 0.99023 0.85719 0.80019 0.80169 0.77182 1.21887 1.18224 1.18824 1.21809 0.94081 0.88978 0.93189 1.22605 1.01609 0.98144 0.93664 1.22418 1.01092 0.93187 0.97941 1.22218 1.00055 0.98693 0.93703 1.22268 1.00091 0.94607 0.98981 1.19851 0.80286 0.93840 0.87365 1.92921 1.46369 1.92556 1.83586 1.92929 1.72131 1.66596 1.83273 0.91134 0.89849 0.93950 0.92517 0.92464 0.91621 0.91923 0.90608 0.89817 0.90561 0.92350 0.93344 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.58 8.40 71.98 0.60 -2.98 16 2 C -0.12 -4.22 6.39 -10.80 -0.07 -4.29 16 3 H 0.16 4.45 8.14 -2.39 -0.02 4.43 16 4 C -0.15 -6.80 3.89 -11.54 -0.04 -6.85 16 5 H 0.13 5.81 6.97 -2.38 -0.02 5.80 16 6 C 0.52 26.01 6.56 87.66 0.57 26.59 16 7 O -0.62 -32.32 12.46 -3.08 -0.04 -32.36 16 8 N -0.44 -21.37 2.39 -609.37 -1.46 -22.83 16 9 C -0.35 -16.86 6.89 84.04 0.58 -16.28 16 10 H 0.09 4.07 6.97 -2.91 -0.02 4.05 16 11 C 0.03 1.45 3.40 84.92 0.29 1.74 16 12 N -0.87 -45.68 10.54 21.66 0.23 -45.46 16 13 Si 0.95 38.89 29.54 68.60 2.03 40.92 16 14 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 15 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 16 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 17 C 0.12 5.32 3.29 45.72 0.15 5.47 16 18 C -0.12 -4.26 6.43 31.70 0.20 -4.06 16 19 C -0.11 -3.03 6.91 31.91 0.22 -2.81 16 20 C -0.11 -3.45 6.83 31.67 0.22 -3.23 16 21 C -0.12 -4.95 6.25 31.32 0.20 -4.75 16 22 C 0.22 9.93 3.47 30.60 0.11 10.04 16 23 F -0.17 -7.54 17.60 44.97 0.79 -6.75 16 24 F -0.17 -8.52 15.62 44.97 0.70 -7.82 16 25 H 0.07 2.59 7.26 -2.38 -0.02 2.57 16 26 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.04 1.78 6.22 -2.39 -0.01 1.76 16 28 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 29 H 0.06 2.68 6.95 -2.39 -0.02 2.66 16 30 H 0.07 2.42 6.65 -2.39 -0.02 2.40 16 31 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 2.62 7.17 -2.39 -0.02 2.61 16 Total: -1.00 -59.60 299.79 6.36 -53.25 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 1.08 Total: 22.45 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 3.03 Total: -1.41 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: -1.23 Total: -68.28 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.04 Total: -32.36 kcal Atomic # 9 Polarization: -16.06 SS G_CDS: 1.49 Total: -14.57 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -59.60 6.36 -53.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336448248.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.932 kcal (2) G-P(sol) polarization free energy of solvation -59.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds