Wall clock time and date at job start Mon Mar 30 2020 01:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36771 * 125.07418 * 2 1 4 4 C 1.34255 * 109.90465 * 179.97438 * 3 2 1 5 5 C 1.46479 * 107.01046 * 359.97438 * 4 3 2 6 6 C 1.39794 * 133.97851 * 179.97438 * 5 4 3 7 7 C 1.36612 * 119.89415 * 179.97438 * 6 5 4 8 8 C 1.38783 * 120.58505 * 0.02562 * 7 6 5 9 9 C 1.38338 * 120.58640 * 359.97438 * 8 7 6 10 10 N 1.40055 * 120.17341 * 179.97438 * 9 8 7 11 11 C 1.34782 * 119.99891 * 325.07811 * 10 9 8 12 12 O 1.21586 * 119.99871 * 4.49912 * 11 10 9 13 13 N 1.34775 * 119.99757 * 184.50885 * 11 10 9 14 14 C 1.46501 * 119.99593 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47077 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99837 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00318 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99841 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00269 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47210 * 60.00257 * 19 17 15 21 21 H 1.48498 * 109.47156 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47065 * 300.00041 * 19 17 15 23 23 C 1.37788 * 125.08126 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47278 * 274.73048 * 1 2 3 25 25 H 1.09000 * 109.47285 * 34.73742 * 1 2 3 26 26 H 1.09001 * 109.46799 * 154.73265 * 1 2 3 27 27 H 1.08000 * 125.04908 * 0.02562 * 3 2 1 28 28 H 1.07998 * 126.49652 * 180.26297 * 4 3 2 29 29 H 1.07995 * 120.05335 * 359.97438 * 6 5 4 30 30 H 1.07993 * 119.70907 * 179.97438 * 7 6 5 31 31 H 1.08001 * 119.70490 * 179.97438 * 8 7 6 32 32 H 0.97000 * 120.00379 * 145.07154 * 10 9 8 33 33 H 0.97001 * 120.00283 * 359.97438 * 13 11 10 34 34 H 1.08993 * 109.47604 * 299.99589 * 14 13 11 35 35 H 1.09006 * 109.46960 * 59.99941 * 14 13 11 36 36 H 0.97006 * 120.00481 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2509 1.1193 0.0000 4 6 3.5467 0.7680 0.0006 5 6 3.5937 -0.6960 0.0016 6 6 4.6304 -1.6339 0.0020 7 6 4.3407 -2.9690 0.0036 8 6 3.0233 -3.4057 0.0041 9 6 1.9804 -2.4968 0.0037 10 7 0.6542 -2.9471 0.0038 11 6 0.3239 -4.0703 -0.6641 12 8 1.1893 -4.7369 -1.1979 13 7 -0.9657 -4.4542 -0.7403 14 6 -1.3248 -5.6748 -1.4667 15 6 -2.8167 -5.8777 -1.4013 16 1 -3.4355 -5.1682 -0.8721 17 6 -3.3918 -6.9685 -2.0181 18 7 -2.6383 -7.8322 -2.6630 19 14 -5.2411 -7.2197 -1.9377 20 1 -5.9260 -6.0559 -2.5555 21 1 -5.6051 -8.4569 -2.6739 22 1 -5.6622 -7.3462 -0.5194 23 6 2.2569 -1.1276 0.0005 24 1 -0.3634 0.0847 1.0242 25 1 -0.3634 0.8445 -0.5856 26 1 -0.3633 -0.9294 -0.4387 27 1 1.8837 2.1350 0.0004 28 1 4.3938 1.4379 0.0047 29 1 5.6586 -1.3036 0.0012 30 1 5.1438 -3.6909 0.0035 31 1 2.8105 -4.4645 0.0049 32 1 -0.0265 -2.4507 0.4845 33 1 -1.6561 -3.9225 -0.3143 34 1 -1.0157 -5.5823 -2.5078 35 1 -0.8221 -6.5289 -1.0128 36 1 -3.0428 -8.5999 -3.0967 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336531330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:59 Heat of formation + Delta-G solvation = 40.296773 kcal Electronic energy + Delta-G solvation = -20163.375940 eV Core-core repulsion = 17034.420706 eV Total energy + Delta-G solvation = -3128.955234 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.41430 -39.51286 -36.90492 -34.84636 -34.16011 -32.47911 -31.93728 -29.50958 -28.74093 -27.12591 -25.97002 -23.25438 -22.16576 -21.86397 -20.42875 -19.90820 -18.20811 -17.45763 -16.64608 -16.03313 -15.61365 -15.47799 -14.99507 -14.82807 -14.58335 -14.07610 -13.64358 -13.38680 -13.14667 -12.85374 -12.75069 -12.38558 -12.06977 -12.00779 -11.57771 -11.28436 -11.20333 -11.01766 -10.91627 -10.34165 -10.18379 -9.44716 -9.39552 -8.90913 -8.77440 -8.08581 -7.96696 -7.17310 -6.19622 -4.27049 1.27535 1.76959 2.70483 2.75486 3.14776 3.22619 3.28232 3.30020 3.73035 4.13627 4.28542 4.59103 4.72387 4.80405 4.88356 4.98785 5.16063 5.16516 5.29672 5.40848 5.59073 5.66188 5.81898 5.96081 6.20353 6.47085 6.59539 6.83365 6.88129 6.95370 7.01730 7.24858 7.37930 7.40048 7.46413 7.49731 7.79019 7.95712 8.65072 8.80518 9.17523 9.40228 10.90457 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031000 B = 0.003879 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.997658 B = 7217.467545 C = 8001.189397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.486 5.486 3 C 0.047 3.953 4 C -0.207 4.207 5 C -0.094 4.094 6 C -0.100 4.100 7 C -0.122 4.122 8 C -0.107 4.107 9 C 0.167 3.833 10 N -0.699 5.699 11 C 0.690 3.310 12 O -0.578 6.578 13 N -0.723 5.723 14 C 0.266 3.734 15 C -0.545 4.545 16 H 0.062 0.938 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.905 3.095 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.071 3.929 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.165 0.835 28 H 0.145 0.855 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.147 0.853 32 H 0.396 0.604 33 H 0.386 0.614 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.177 17.714 7.521 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.170 5.170 3 C -0.079 4.079 4 C -0.233 4.233 5 C -0.099 4.099 6 C -0.119 4.119 7 C -0.142 4.142 8 C -0.130 4.130 9 C 0.070 3.930 10 N -0.349 5.349 11 C 0.390 3.610 12 O -0.456 6.456 13 N -0.375 5.375 14 C 0.146 3.854 15 C -0.584 4.584 16 H 0.080 0.920 17 C -0.139 4.139 18 N -0.521 5.521 19 Si 0.732 3.268 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.201 1.201 23 C -0.036 4.036 24 H 0.088 0.912 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.183 0.817 28 H 0.163 0.837 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.164 0.836 32 H 0.231 0.769 33 H 0.218 0.782 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.480 16.841 6.853 20.062 hybrid contribution -1.847 0.370 0.358 1.918 sum 6.633 17.211 7.211 19.804 Atomic orbital electron populations 1.22100 0.77522 1.04677 1.02895 1.43711 1.05597 1.04199 1.63453 1.21721 0.90567 0.90882 1.04699 1.21606 0.95804 0.92772 1.13087 1.19003 0.91315 0.93372 1.06235 1.20182 0.97558 0.92021 1.02156 1.20564 0.96055 0.95284 1.02252 1.21132 0.90761 1.00434 1.00625 1.16539 0.84106 0.87877 1.04498 1.42934 1.08230 1.28517 1.55224 1.16159 0.84498 0.80631 0.79684 1.90878 1.48157 1.54801 1.51738 1.45777 1.04271 1.29874 1.57597 1.19047 0.95132 0.79678 0.91577 1.21157 0.91484 1.09926 1.35796 0.91997 1.24937 0.98814 0.95425 0.94744 1.69962 1.35672 1.12948 1.33525 0.86460 0.84376 0.77686 0.78283 1.20096 1.21015 1.20068 1.18092 0.90796 0.86586 1.08136 0.91179 0.89833 0.89774 0.81746 0.83747 0.86314 0.85873 0.83588 0.76868 0.78152 0.95508 0.95460 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 10.36 59.85 0.62 1.22 16 2 N -0.49 -5.73 3.18 -121.68 -0.39 -6.12 16 3 C 0.05 0.47 11.29 -16.75 -0.19 0.28 16 4 C -0.21 -2.33 11.08 -37.67 -0.42 -2.75 16 5 C -0.09 -1.32 6.37 -105.15 -0.67 -1.99 16 6 C -0.10 -1.32 10.05 -39.59 -0.40 -1.72 16 7 C -0.12 -1.74 9.97 -39.97 -0.40 -2.14 16 8 C -0.11 -1.83 8.69 -39.34 -0.34 -2.17 16 9 C 0.17 2.76 6.32 -83.52 -0.53 2.24 16 10 N -0.70 -11.26 4.48 -14.12 -0.06 -11.33 16 11 C 0.69 14.24 8.41 -86.92 -0.73 13.51 16 12 O -0.58 -14.20 13.78 5.29 0.07 -14.12 16 13 N -0.72 -15.11 5.55 -66.41 -0.37 -15.48 16 14 C 0.27 7.01 5.43 -5.19 -0.03 6.98 16 15 C -0.55 -14.58 9.28 -34.44 -0.32 -14.90 16 16 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 17 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 18 N -0.88 -25.84 13.29 55.43 0.74 -25.10 16 19 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 C 0.07 1.05 6.82 -83.80 -0.57 0.48 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.82 5.84 -51.93 -0.30 0.52 16 27 H 0.17 1.04 8.06 -52.49 -0.42 0.61 16 28 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 30 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.15 2.78 6.19 -52.49 -0.32 2.45 16 32 H 0.40 5.02 6.71 -40.82 -0.27 4.75 16 33 H 0.39 6.76 8.34 -40.82 -0.34 6.42 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 308.43 15.07 4.65 4.65 Total: -1.00 -33.63 308.43 -8.61 -42.24 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -4.16 Total: 8.98 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -4.07 Total: 0.73 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.08 Total: -58.03 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.07 Total: -14.12 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.63 -8.61 -42.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336531330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.534 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds