Wall clock time and date at job start Mon Mar 30 2020 01:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36771 * 125.07418 * 2 1 4 4 C 1.34255 * 109.90465 * 179.97438 * 3 2 1 5 5 C 1.46479 * 107.01046 * 359.97438 * 4 3 2 6 6 C 1.39794 * 133.97851 * 179.97438 * 5 4 3 7 7 C 1.36612 * 119.89415 * 179.97438 * 6 5 4 8 8 C 1.38783 * 120.58505 * 0.02562 * 7 6 5 9 9 C 1.38338 * 120.58640 * 359.97438 * 8 7 6 10 10 N 1.40055 * 120.17341 * 179.97438 * 9 8 7 11 11 C 1.34782 * 119.99891 * 325.07811 * 10 9 8 12 12 O 1.21586 * 119.99871 * 4.49912 * 11 10 9 13 13 N 1.34775 * 119.99757 * 184.50885 * 11 10 9 14 14 C 1.46501 * 119.99593 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47077 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99837 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00318 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99841 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00269 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47210 * 60.00257 * 19 17 15 21 21 H 1.48498 * 109.47156 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47065 * 300.00041 * 19 17 15 23 23 C 1.37788 * 125.08126 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47278 * 274.73048 * 1 2 3 25 25 H 1.09000 * 109.47285 * 34.73742 * 1 2 3 26 26 H 1.09001 * 109.46799 * 154.73265 * 1 2 3 27 27 H 1.08000 * 125.04908 * 0.02562 * 3 2 1 28 28 H 1.07998 * 126.49652 * 180.26297 * 4 3 2 29 29 H 1.07995 * 120.05335 * 359.97438 * 6 5 4 30 30 H 1.07993 * 119.70907 * 179.97438 * 7 6 5 31 31 H 1.08001 * 119.70490 * 179.97438 * 8 7 6 32 32 H 0.97000 * 120.00379 * 145.07154 * 10 9 8 33 33 H 0.97001 * 120.00283 * 359.97438 * 13 11 10 34 34 H 1.08993 * 109.47604 * 299.99589 * 14 13 11 35 35 H 1.09006 * 109.46960 * 59.99941 * 14 13 11 36 36 H 0.97006 * 120.00481 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2509 1.1193 0.0000 4 6 3.5467 0.7680 0.0006 5 6 3.5937 -0.6960 0.0016 6 6 4.6304 -1.6339 0.0020 7 6 4.3407 -2.9690 0.0036 8 6 3.0233 -3.4057 0.0041 9 6 1.9804 -2.4968 0.0037 10 7 0.6542 -2.9471 0.0038 11 6 0.3239 -4.0703 -0.6641 12 8 1.1893 -4.7369 -1.1979 13 7 -0.9657 -4.4542 -0.7403 14 6 -1.3248 -5.6748 -1.4667 15 6 -2.8167 -5.8777 -1.4013 16 1 -3.4355 -5.1682 -0.8721 17 6 -3.3918 -6.9685 -2.0181 18 7 -2.6383 -7.8322 -2.6630 19 14 -5.2411 -7.2197 -1.9377 20 1 -5.9260 -6.0559 -2.5555 21 1 -5.6051 -8.4569 -2.6739 22 1 -5.6622 -7.3462 -0.5194 23 6 2.2569 -1.1276 0.0005 24 1 -0.3634 0.0847 1.0242 25 1 -0.3634 0.8445 -0.5856 26 1 -0.3633 -0.9294 -0.4387 27 1 1.8837 2.1350 0.0004 28 1 4.3938 1.4379 0.0047 29 1 5.6586 -1.3036 0.0012 30 1 5.1438 -3.6909 0.0035 31 1 2.8105 -4.4645 0.0049 32 1 -0.0265 -2.4507 0.4845 33 1 -1.6561 -3.9225 -0.3143 34 1 -1.0157 -5.5823 -2.5078 35 1 -0.8221 -6.5289 -1.0128 36 1 -3.0428 -8.5999 -3.0967 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336531330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:59 Heat of formation + Delta-G solvation = 17.717611 kcal Electronic energy + Delta-G solvation = -20164.355046 eV Core-core repulsion = 17034.420706 eV Total energy + Delta-G solvation = -3129.934340 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.45467 -41.05068 -38.07211 -36.34719 -35.94466 -34.41222 -32.95462 -30.74936 -29.80203 -28.97286 -26.89358 -25.02601 -23.49463 -23.06927 -21.87310 -21.04568 -19.85386 -18.66543 -17.98895 -17.63719 -16.93398 -16.66840 -16.52569 -16.15863 -16.02153 -15.50127 -15.06415 -14.73860 -14.26337 -14.07791 -13.87885 -13.77887 -13.61355 -13.33799 -12.93305 -12.71765 -12.64820 -12.33757 -12.25269 -12.22575 -11.52576 -11.48977 -11.06718 -10.81190 -10.13897 -9.77798 -9.12787 -8.29797 -8.25782 -6.46701 0.17746 0.66322 1.42644 1.47445 1.54883 1.63555 1.79906 1.92832 2.13625 2.38063 2.98274 3.05575 3.32861 3.77248 3.86043 4.04360 4.16087 4.39549 4.41145 4.55274 4.63739 4.68456 4.86936 4.97566 5.02324 5.09901 5.23062 5.36852 5.43347 5.47359 5.60344 5.74217 5.80749 5.85826 5.90135 6.09927 6.28316 6.44840 6.63578 7.10288 7.23557 7.54994 8.82471 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031000 B = 0.003879 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.997658 B = 7217.467545 C = 8001.189397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.488 5.488 3 C 0.060 3.940 4 C -0.220 4.220 5 C -0.112 4.112 6 C -0.092 4.092 7 C -0.133 4.133 8 C -0.135 4.135 9 C 0.142 3.858 10 N -0.676 5.676 11 C 0.690 3.310 12 O -0.623 6.623 13 N -0.715 5.715 14 C 0.285 3.715 15 C -0.557 4.557 16 H 0.085 0.915 17 C 0.005 3.995 18 N -0.930 5.930 19 Si 0.987 3.013 20 H -0.261 1.261 21 H -0.286 1.286 22 H -0.262 1.262 23 C 0.053 3.947 24 H 0.092 0.908 25 H 0.110 0.890 26 H 0.067 0.933 27 H 0.210 0.790 28 H 0.171 0.829 29 H 0.150 0.850 30 H 0.140 0.860 31 H 0.114 0.886 32 H 0.414 0.586 33 H 0.406 0.594 34 H -0.012 1.012 35 H -0.011 1.011 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.960 21.182 8.523 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.172 5.172 3 C -0.065 4.065 4 C -0.244 4.244 5 C -0.118 4.118 6 C -0.111 4.111 7 C -0.153 4.153 8 C -0.157 4.157 9 C 0.046 3.954 10 N -0.326 5.326 11 C 0.391 3.609 12 O -0.503 6.503 13 N -0.368 5.368 14 C 0.162 3.838 15 C -0.595 4.595 16 H 0.103 0.897 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.809 3.191 20 H -0.186 1.186 21 H -0.212 1.212 22 H -0.186 1.186 23 C -0.055 4.055 24 H 0.111 0.889 25 H 0.129 0.871 26 H 0.085 0.915 27 H 0.227 0.773 28 H 0.189 0.811 29 H 0.167 0.833 30 H 0.158 0.842 31 H 0.131 0.869 32 H 0.252 0.748 33 H 0.241 0.759 34 H 0.006 0.994 35 H 0.007 0.993 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.251 20.397 7.909 23.047 hybrid contribution -1.356 -0.570 0.066 1.473 sum 5.894 19.827 7.974 22.168 Atomic orbital electron populations 1.22351 0.75792 1.04993 1.04777 1.44041 1.06831 1.03687 1.62601 1.22485 0.90100 0.92008 1.01911 1.21983 0.97465 0.91369 1.13617 1.19542 0.91101 0.95280 1.05860 1.20537 0.99124 0.91319 1.00122 1.20741 0.95269 0.96583 1.02687 1.21046 0.92655 0.99126 1.02867 1.16675 0.83487 0.89028 1.06227 1.42539 1.09031 1.26897 1.54180 1.16263 0.83740 0.81362 0.79569 1.90854 1.49320 1.56544 1.53598 1.45311 1.05141 1.28810 1.57554 1.18475 0.95295 0.80458 0.89529 1.21550 0.91468 1.10561 1.35889 0.89654 1.26063 1.04585 0.94888 0.93946 1.70136 1.38325 1.13729 1.34662 0.85182 0.77226 0.77766 0.78879 1.18586 1.21160 1.18641 1.18124 0.92154 0.86506 1.08719 0.88912 0.87109 0.91455 0.77337 0.81129 0.83255 0.84201 0.86854 0.74763 0.75868 0.99444 0.99327 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.88 10.36 127.77 1.32 2.20 16 2 N -0.49 -10.17 3.18 -538.88 -1.71 -11.89 16 3 C 0.06 0.96 11.29 83.01 0.94 1.90 16 4 C -0.22 -4.18 11.08 23.51 0.26 -3.92 16 5 C -0.11 -2.96 6.37 -20.21 -0.13 -3.09 16 6 C -0.09 -2.33 10.05 22.27 0.22 -2.11 16 7 C -0.13 -3.89 9.97 22.02 0.22 -3.67 16 8 C -0.13 -4.89 8.69 22.42 0.19 -4.69 16 9 C 0.14 4.85 6.32 38.20 0.24 5.09 16 10 N -0.68 -22.34 4.48 -316.86 -1.42 -23.76 16 11 C 0.69 29.93 8.41 179.05 1.51 31.44 16 12 O -0.62 -32.89 13.78 -3.99 -0.05 -32.94 16 13 N -0.71 -30.86 5.55 -482.29 -2.68 -33.54 16 14 C 0.29 15.79 5.43 85.63 0.46 16.26 16 15 C -0.56 -30.05 9.28 25.60 0.24 -29.81 16 16 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 17 C 0.01 0.28 5.46 84.65 0.46 0.74 16 18 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 19 Si 0.99 41.83 29.54 68.60 2.03 43.86 16 20 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 21 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 23 C 0.05 1.52 6.82 39.10 0.27 1.79 16 24 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.11 0.98 8.14 -2.39 -0.02 0.97 16 26 H 0.07 1.19 5.84 -2.39 -0.01 1.18 16 27 H 0.21 1.38 8.06 -2.91 -0.02 1.35 16 28 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 30 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 31 H 0.11 4.79 6.19 -2.91 -0.02 4.77 16 32 H 0.41 10.35 6.71 -92.71 -0.62 9.72 16 33 H 0.41 14.11 8.34 -92.71 -0.77 13.33 16 34 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 35 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 36 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -77.68 308.43 2.38 -75.30 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: -0.27 Total: 26.64 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 6.21 Total: 12.11 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -5.53 Total: -124.97 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.05 Total: -32.94 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -77.68 2.38 -75.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336531330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.017 kcal (2) G-P(sol) polarization free energy of solvation -77.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds