Wall clock time and date at job start Mon Mar 30 2020 01:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 115.55105 * 2 1 4 4 C 1.52999 * 117.49625 * 214.33426 * 2 1 3 5 5 H 1.08998 * 117.49815 * 0.02562 * 4 2 1 6 6 C 1.50703 * 117.49785 * 144.99890 * 4 2 1 7 7 O 1.21284 * 119.99876 * 359.97438 * 6 4 2 8 8 N 1.34775 * 119.99872 * 180.02562 * 6 4 2 9 9 C 1.46932 * 120.62739 * 180.02562 * 8 6 4 10 10 C 1.53190 * 108.76939 * 233.57971 * 9 8 6 11 11 C 1.53037 * 109.31532 * 305.36410 * 10 9 8 12 12 C 1.50702 * 109.45981 * 181.38638 * 11 10 9 13 13 H 1.08002 * 120.00299 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.69441 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.53041 * 109.52647 * 61.37487 * 11 10 9 21 21 C 1.46923 * 120.63053 * 359.96694 * 8 6 4 22 22 C 1.52992 * 117.51726 * 145.70666 * 2 1 3 23 23 F 1.39901 * 117.50083 * 359.97438 * 22 2 1 24 24 F 1.39908 * 117.49789 * 214.96921 * 22 2 1 25 25 H 1.08991 * 109.47539 * 205.66819 * 1 2 3 26 26 H 1.09006 * 109.46827 * 325.66613 * 1 2 3 27 27 H 1.08999 * 109.47151 * 85.66577 * 1 2 3 28 28 H 1.09003 * 109.58564 * 113.79920 * 9 8 6 29 29 H 1.08993 * 109.58629 * 353.36720 * 9 8 6 30 30 H 1.09001 * 109.49434 * 185.41394 * 10 9 8 31 31 H 1.09002 * 109.49829 * 65.31970 * 10 9 8 32 32 H 1.09001 * 109.46441 * 301.36008 * 11 10 9 33 33 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 34 34 H 1.08997 * 109.49543 * 58.57927 * 20 11 10 35 35 H 1.09004 * 109.49532 * 178.67458 * 20 11 10 36 36 H 1.08999 * 109.58851 * 246.20453 * 21 8 6 37 37 H 1.08994 * 109.59073 * 6.63613 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1207 -0.7655 5 1 1.6111 -1.8577 -1.2694 6 6 3.5290 -0.7804 -1.4616 7 8 3.9710 0.3474 -1.4022 8 7 4.1931 -1.7292 -2.1510 9 6 5.4547 -1.4128 -2.8344 10 6 5.3398 -1.8361 -4.3022 11 6 4.9390 -3.3113 -4.3737 12 6 4.8581 -3.7402 -5.8162 13 1 5.0708 -3.0317 -6.6030 14 6 4.5182 -5.0388 -6.1312 15 7 4.2591 -5.9016 -5.1731 16 14 4.4255 -5.5725 -7.9189 17 1 4.7600 -4.4224 -8.7968 18 1 5.3923 -6.6743 -8.1574 19 1 3.0512 -6.0453 -8.2238 20 6 3.5747 -3.5035 -3.7074 21 6 3.6699 -3.0997 -2.2323 22 6 2.2369 -1.1210 0.7645 23 9 1.4348 -2.0677 1.4108 24 9 3.4372 -0.8054 1.4102 25 1 -0.3634 -0.9262 0.4451 26 1 -0.3633 0.8487 0.5797 27 1 -0.3633 0.0777 -1.0247 28 1 6.2729 -1.9553 -2.3607 29 1 5.6425 -0.3407 -2.7769 30 1 6.3005 -1.6957 -4.7976 31 1 4.5823 -1.2288 -4.7978 32 1 5.6841 -3.9156 -3.8564 33 1 4.0196 -6.8151 -5.3947 34 1 2.8340 -2.8804 -4.2086 35 1 3.2790 -4.5502 -3.7795 36 1 4.3429 -3.7794 -1.7096 37 1 2.6802 -3.1407 -1.7776 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336594115.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:03 Heat of formation + Delta-G solvation = -113.542729 kcal Electronic energy + Delta-G solvation = -21748.756653 eV Core-core repulsion = 18162.441251 eV Total energy + Delta-G solvation = -3586.315402 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.80102 -47.45883 -39.97904 -37.34825 -36.09511 -33.59382 -31.40831 -30.22624 -28.96030 -26.41774 -24.30201 -22.75363 -22.15525 -21.27930 -19.85776 -18.75370 -17.75140 -17.01281 -16.68103 -16.14958 -16.12516 -15.40216 -14.60485 -14.43507 -14.11103 -13.88191 -13.70892 -13.52906 -13.23195 -13.15844 -12.99880 -12.84936 -12.57528 -12.37666 -11.91231 -11.72187 -11.37185 -11.00264 -10.77932 -10.66396 -10.45114 -10.24225 -10.09543 -9.77170 -9.55379 -9.23736 -8.99497 -8.44017 -8.12100 -6.08303 -4.14467 2.24089 2.80111 3.14724 3.24085 3.32964 3.36850 3.42323 4.04516 4.20838 4.37006 4.45026 4.75205 4.91727 5.21009 5.25134 5.37590 5.44448 5.52715 5.67953 5.73796 5.87210 5.93459 6.00966 6.07641 6.19278 6.36452 6.57786 6.79700 6.95614 7.04773 7.19091 7.60104 7.76361 7.85011 7.97394 8.34154 8.34877 8.89313 9.51155 10.97424 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.028726 B = 0.004559 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.498463 B = 6140.504985 C = 6473.883806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.115 4.115 3 H 0.142 0.858 4 C -0.188 4.188 5 H 0.151 0.849 6 C 0.541 3.459 7 O -0.546 6.546 8 N -0.589 5.589 9 C 0.111 3.889 10 C -0.123 4.123 11 C 0.047 3.953 12 C -0.512 4.512 13 H 0.056 0.944 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.124 4.124 21 C 0.099 3.901 22 C 0.221 3.779 23 F -0.155 7.155 24 F -0.152 7.152 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.028 0.972 33 H 0.260 0.740 34 H 0.040 0.960 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.467 7.590 10.106 14.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.134 4.134 3 H 0.160 0.840 4 C -0.210 4.210 5 H 0.169 0.831 6 C 0.327 3.673 7 O -0.425 6.425 8 N -0.320 5.320 9 C -0.010 4.010 10 C -0.161 4.161 11 C 0.029 3.971 12 C -0.550 4.550 13 H 0.074 0.926 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.163 4.163 21 C -0.022 4.022 22 C 0.183 3.817 23 F -0.135 7.135 24 F -0.132 7.132 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.124 0.876 36 H 0.085 0.915 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.241 7.948 10.181 14.345 hybrid contribution 0.003 -0.780 -0.839 1.145 sum -6.238 7.168 9.342 13.325 Atomic orbital electron populations 1.21438 0.90157 1.03517 1.03578 1.23728 0.97414 0.96170 0.96137 0.84042 1.23917 1.00210 1.04236 0.92600 0.83132 1.19061 0.83988 0.84916 0.79334 1.90660 1.68320 1.20853 1.62671 1.48156 1.23787 1.10756 1.49311 1.21775 0.84069 1.01129 0.94051 1.22018 1.01136 1.00375 0.92607 1.18653 0.92869 0.89450 0.96154 1.21235 1.46338 0.95561 0.91863 0.92589 1.24963 0.95167 0.96638 0.97192 1.69842 1.47449 1.04388 1.31417 0.86554 0.77634 0.78620 0.85306 1.19817 1.21024 1.21040 1.22054 1.00597 1.03871 0.89758 1.22166 0.97991 0.80849 1.01234 1.19868 0.81376 0.93998 0.86418 1.93021 1.71941 1.65451 1.83075 1.93067 1.44602 1.92491 1.83083 0.91164 0.90749 0.90378 0.91861 0.90138 0.91920 0.92850 0.95347 0.92978 0.94099 0.87594 0.91516 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 10.16 37.16 0.38 -0.70 16 2 C -0.11 -1.31 5.90 -90.62 -0.54 -1.84 16 3 H 0.14 1.67 7.67 -51.93 -0.40 1.28 16 4 C -0.19 -2.54 4.83 -91.77 -0.44 -2.99 16 5 H 0.15 1.79 6.57 -51.93 -0.34 1.45 16 6 C 0.54 9.32 7.12 -10.98 -0.08 9.25 16 7 O -0.55 -10.69 15.67 5.55 0.09 -10.60 16 8 N -0.59 -10.49 2.97 -172.74 -0.51 -11.00 16 9 C 0.11 2.01 6.43 -3.71 -0.02 1.99 16 10 C -0.12 -2.46 5.30 -26.61 -0.14 -2.60 16 11 C 0.05 1.10 2.06 -91.73 -0.19 0.91 16 12 C -0.51 -13.36 8.56 -34.44 -0.29 -13.65 16 13 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.62 5.31 -17.82 -0.09 1.52 16 15 N -0.89 -24.02 11.32 55.43 0.63 -23.40 16 16 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 C -0.12 -2.65 5.16 -26.59 -0.14 -2.79 16 21 C 0.10 1.74 6.35 -3.69 -0.02 1.72 16 22 C 0.22 2.94 5.13 -26.74 -0.14 2.80 16 23 F -0.15 -1.98 16.50 2.25 0.04 -1.95 16 24 F -0.15 -2.35 17.13 2.25 0.04 -2.32 16 25 H 0.07 0.57 7.10 -51.93 -0.37 0.20 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 1.44 7.00 -51.93 -0.36 1.07 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.11 2.52 6.05 -51.93 -0.31 2.21 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.07 1.00 5.51 -51.93 -0.29 0.71 16 LS Contribution 307.84 15.07 4.64 4.64 Total: -1.00 -28.60 307.84 -6.82 -35.42 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -4.99 Total: 0.10 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -1.72 Total: -6.38 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.11 Total: -34.40 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.08 Total: -4.26 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.60 -6.82 -35.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336594115.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.125 kcal (2) G-P(sol) polarization free energy of solvation -28.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds