Wall clock time and date at job start Mon Mar 30 2020 02:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37104 * 120.00390 * 2 1 4 4 H 1.07996 * 120.00306 * 204.39546 * 3 2 1 5 5 C 1.38947 * 119.99471 * 24.39734 * 3 2 1 6 6 N 1.31415 * 120.00237 * 12.63869 * 5 3 2 7 7 Si 1.86803 * 119.99743 * 192.64046 * 5 3 2 8 8 H 1.48500 * 109.47170 * 59.99898 * 7 5 3 9 9 H 1.48503 * 109.47134 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46972 * 299.99656 * 7 5 3 11 11 C 1.34775 * 119.99996 * 180.02562 * 2 1 3 12 12 O 1.21301 * 120.00333 * 180.02562 * 11 2 1 13 13 C 1.50703 * 120.00182 * 359.97438 * 11 2 1 14 14 C 1.52995 * 109.47287 * 180.02562 * 13 11 2 15 15 N 1.46509 * 109.46875 * 180.02562 * 14 13 11 16 16 C 1.36031 * 126.34636 * 264.68430 * 15 14 13 17 17 N 1.30109 * 110.10012 * 179.87497 * 16 15 14 18 18 C 1.35782 * 109.64374 * 0.39843 * 17 16 15 19 19 C 1.39741 * 133.60409 * 179.75797 * 18 17 16 20 20 C 1.36606 * 119.88287 * 179.97438 * 19 18 17 21 21 C 1.38771 * 120.67415 * 359.97428 * 20 19 18 22 22 C 1.37859 * 120.45246 * 0.05143 * 21 20 19 23 23 C 1.38054 * 126.34889 * 85.00150 * 15 14 13 24 24 H 1.09005 * 109.47113 * 265.86118 * 1 2 3 25 25 H 1.08998 * 109.47023 * 25.85873 * 1 2 3 26 26 H 1.09001 * 109.47464 * 145.85968 * 1 2 3 27 27 H 0.97006 * 120.00013 * 180.02562 * 6 5 3 28 28 H 1.09000 * 109.46791 * 300.00572 * 13 11 2 29 29 H 1.09007 * 109.46651 * 60.00197 * 13 11 2 30 30 H 1.09001 * 109.47087 * 300.00186 * 14 13 11 31 31 H 1.08994 * 109.47503 * 60.00165 * 14 13 11 32 32 H 1.08003 * 124.95330 * 0.02562 * 16 15 14 33 33 H 1.07997 * 120.05392 * 359.97390 * 19 18 17 34 34 H 1.08005 * 119.66208 * 180.02562 * 20 19 18 35 35 H 1.07998 * 119.77839 * 180.02562 * 21 20 19 36 36 H 1.07992 * 120.15815 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1582 1.2290 -0.3863 5 6 1.5489 2.3369 0.4971 6 7 0.4346 2.2490 1.1882 7 14 2.3238 4.0072 0.1828 8 1 2.4042 4.2483 -1.2803 9 1 1.4934 5.0647 0.8133 10 1 3.6896 4.0367 0.7651 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 6 2.3796 -3.6352 -0.0005 15 7 1.6470 -4.9040 -0.0011 16 6 1.3314 -5.6532 1.0895 17 7 0.6754 -6.7167 0.7268 18 6 0.5329 -6.7267 -0.6235 19 6 -0.0684 -7.6115 -1.5226 20 6 -0.0480 -7.3400 -2.8613 21 6 0.5647 -6.1911 -3.3413 22 6 1.1647 -5.3042 -2.4730 23 6 1.1543 -5.5638 -1.1092 24 1 -0.3633 -0.0742 1.0250 25 1 -0.3633 0.9248 -0.4482 26 1 -0.3634 -0.8505 -0.5767 27 1 0.0143 3.0517 1.5349 28 1 0.7590 -2.5302 0.8897 29 1 0.7584 -2.5298 -0.8904 30 1 3.0063 -3.5774 -0.8905 31 1 3.0062 -3.5776 0.8894 32 1 1.5859 -5.4009 2.1083 33 1 -0.5483 -8.5083 -1.1598 34 1 -0.5141 -8.0260 -3.5530 35 1 0.5720 -5.9905 -4.4025 36 1 1.6404 -4.4118 -2.8518 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337536040.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:26 Heat of formation + Delta-G solvation = 28.210133 kcal Electronic energy + Delta-G solvation = -20173.025140 eV Core-core repulsion = 17043.545790 eV Total energy + Delta-G solvation = -3129.479350 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.08362 -40.46646 -38.24683 -36.84656 -35.71152 -33.73285 -32.22799 -30.61903 -30.22829 -28.25760 -26.79003 -25.03538 -24.15580 -22.96162 -21.50646 -20.63727 -18.95585 -18.43655 -18.16057 -17.34776 -16.77933 -16.60174 -16.53810 -16.25768 -15.79860 -15.07110 -14.93466 -14.57115 -14.42212 -14.31248 -13.65475 -13.46067 -13.31145 -13.15096 -12.87705 -12.68162 -12.56982 -12.49862 -12.34860 -12.20731 -12.13914 -11.39281 -11.02777 -10.93957 -10.45510 -9.72108 -9.30913 -9.05524 -8.37800 -6.03515 0.04398 0.59975 1.37773 1.40780 1.50468 1.61131 1.85349 1.95265 2.26854 2.94974 3.04298 3.05410 3.37659 3.67623 3.69305 3.80543 4.00220 4.15208 4.23763 4.32246 4.42716 4.53008 4.54564 4.63386 4.75656 4.80741 4.90199 4.97151 5.26626 5.31038 5.41912 5.51609 5.61346 5.62582 5.99254 6.05679 6.18211 6.41793 6.89195 7.11315 7.41298 7.95236 8.65154 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034330 B = 0.003765 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.421087 B = 7435.506073 C = 7615.925402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.459 5.459 3 C -0.348 4.348 4 H 0.075 0.925 5 C 0.000 4.000 6 N -0.896 5.896 7 Si 0.988 3.012 8 H -0.267 1.267 9 H -0.271 1.271 10 H -0.275 1.275 11 C 0.443 3.557 12 O -0.629 6.629 13 C -0.126 4.126 14 C 0.143 3.857 15 N -0.489 5.489 16 C 0.262 3.738 17 N -0.531 5.531 18 C 0.013 3.987 19 C -0.083 4.083 20 C -0.123 4.123 21 C -0.101 4.101 22 C -0.124 4.124 23 C 0.025 3.975 24 H 0.044 0.956 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.274 0.726 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.244 0.756 33 H 0.137 0.863 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.583 -13.916 -5.888 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.178 5.178 3 C -0.476 4.476 4 H 0.093 0.907 5 C -0.202 4.202 6 N -0.534 5.534 7 Si 0.812 3.188 8 H -0.192 1.192 9 H -0.196 1.196 10 H -0.201 1.201 11 C 0.232 3.768 12 O -0.517 6.517 13 C -0.167 4.167 14 C 0.020 3.980 15 N -0.178 5.178 16 C -0.023 4.023 17 N -0.251 5.251 18 C -0.104 4.104 19 C -0.102 4.102 20 C -0.143 4.143 21 C -0.120 4.120 22 C -0.145 4.145 23 C -0.083 4.083 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.260 0.740 33 H 0.155 0.845 34 H 0.178 0.822 35 H 0.175 0.825 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.420 -14.267 -5.253 15.583 hybrid contribution 0.623 1.807 -0.167 1.919 sum -2.797 -12.460 -5.420 13.873 Atomic orbital electron populations 1.21429 0.79532 1.00701 1.00583 1.43821 1.06665 1.04800 1.62472 1.19604 1.00568 0.86049 1.41329 0.90740 1.26091 0.96952 1.03003 0.94196 1.70051 1.19661 1.30957 1.32739 0.85070 0.78063 0.76790 0.78901 1.19157 1.19602 1.20077 1.20625 0.87790 0.85859 0.82556 1.90502 1.15630 1.87984 1.57554 1.21701 0.98898 0.91176 1.04943 1.21380 0.92521 0.78114 1.05949 1.45644 1.46288 1.19796 1.06049 1.26051 0.94576 0.86921 0.94756 1.70440 1.21156 1.22030 1.11471 1.19538 1.03697 0.96416 0.90787 1.20306 0.99069 0.98552 0.92320 1.21019 1.00414 0.98225 0.94604 1.21289 0.96720 0.93553 1.00472 1.20307 1.03458 1.01799 0.88916 1.19285 1.02749 0.95749 0.90561 0.93744 0.92362 0.91893 0.91623 0.88338 0.88775 0.89331 0.87317 0.73968 0.84511 0.82219 0.82491 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.15 8.44 127.77 1.08 6.23 16 2 N -0.46 -22.82 3.01 -658.89 -1.98 -24.81 16 3 C -0.35 -19.20 9.24 84.04 0.78 -18.42 16 4 H 0.07 4.36 7.45 -2.91 -0.02 4.34 16 5 C 0.00 -0.01 5.04 84.93 0.43 0.42 16 6 N -0.90 -46.55 10.83 21.66 0.23 -46.31 16 7 Si 0.99 41.37 29.57 68.60 2.03 43.39 16 8 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 9 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 10 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 11 C 0.44 20.14 7.63 87.66 0.67 20.81 16 12 O -0.63 -32.86 15.70 -3.09 -0.05 -32.91 16 13 C -0.13 -4.10 4.63 29.85 0.14 -3.96 16 14 C 0.14 4.09 5.45 86.38 0.47 4.56 16 15 N -0.49 -13.37 2.81 -520.25 -1.46 -14.83 16 16 C 0.26 6.69 12.49 180.06 2.25 8.94 16 17 N -0.53 -15.96 11.27 -192.03 -2.16 -18.12 16 18 C 0.01 0.39 7.23 39.45 0.29 0.68 16 19 C -0.08 -1.95 10.05 22.25 0.22 -1.72 16 20 C -0.12 -2.25 9.96 22.02 0.22 -2.03 16 21 C -0.10 -1.94 10.03 22.31 0.22 -1.71 16 22 C -0.12 -3.04 10.05 22.32 0.22 -2.82 16 23 C 0.03 0.73 6.87 38.86 0.27 0.99 16 24 H 0.04 1.95 7.83 -2.38 -0.02 1.93 16 25 H 0.06 2.67 6.80 -2.39 -0.02 2.65 16 26 H 0.06 2.16 6.61 -2.39 -0.02 2.15 16 27 H 0.27 13.40 8.31 -92.70 -0.77 12.63 16 28 H 0.10 2.99 8.11 -2.39 -0.02 2.97 16 29 H 0.09 2.86 7.41 -2.38 -0.02 2.84 16 30 H 0.09 2.67 8.10 -2.39 -0.02 2.65 16 31 H 0.11 3.00 8.09 -2.39 -0.02 2.98 16 32 H 0.24 4.12 8.06 -2.91 -0.02 4.09 16 33 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 34 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -69.07 310.62 4.95 -64.13 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 1.09 Total: 17.50 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 7.25 Total: 11.95 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -5.37 Total: -104.07 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -0.05 Total: -32.91 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Total: -69.07 4.95 -64.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337536040.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.336 kcal (2) G-P(sol) polarization free energy of solvation -69.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds