Wall clock time and date at job start Mon Mar 30 2020 01:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 5 5 C 1.36936 * 119.99928 * 85.00237 * 4 2 1 6 6 H 1.07993 * 120.00240 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99737 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00292 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99784 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46983 * 59.99932 * 9 7 5 11 11 H 1.48499 * 109.46948 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46935 * 300.00038 * 9 7 5 13 13 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 14 14 N 1.29945 * 126.28949 * 74.68841 * 13 2 1 15 15 O 1.21305 * 110.25191 * 179.84273 * 14 13 2 16 16 C 1.33634 * 109.81063 * 0.42467 * 15 14 13 17 17 C 1.50699 * 126.55287 * 179.75845 * 16 15 14 18 18 C 1.50706 * 109.47142 * 269.97701 * 17 16 15 19 19 C 1.38228 * 119.99836 * 269.72590 * 18 17 16 20 20 C 1.38236 * 119.99959 * 179.76885 * 19 18 17 21 21 C 1.38238 * 119.99937 * 0.50385 * 20 19 18 22 22 C 1.38239 * 119.99740 * 359.74334 * 21 20 19 23 23 C 1.38236 * 120.00293 * 0.02562 * 22 21 20 24 24 N 1.31131 * 106.89895 * 359.73788 * 16 15 14 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 0.97003 * 119.99991 * 264.99646 * 4 2 1 29 29 H 0.97001 * 120.00319 * 179.97438 * 8 7 5 30 30 H 1.09005 * 109.46901 * 29.97513 * 17 16 15 31 31 H 1.08998 * 109.47453 * 149.97695 * 17 16 15 32 32 H 1.08003 * 120.00291 * 359.97438 * 19 18 17 33 33 H 1.07998 * 120.00292 * 180.22858 * 20 19 18 34 34 H 1.07998 * 120.00137 * 179.72789 * 21 20 19 35 35 H 1.07998 * 119.99763 * 179.97438 * 22 21 20 36 36 H 1.07996 * 120.00380 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8928 1.0404 -2.4241 7 6 2.6124 -0.6618 -3.5089 8 7 2.9253 -1.9388 -3.4498 9 14 2.7915 0.2702 -5.1179 10 1 3.7466 1.3926 -4.9360 11 1 3.3003 -0.6483 -6.1680 12 1 1.4693 0.8071 -5.5288 13 6 2.0323 -0.7104 1.2305 14 7 2.0279 -1.9939 1.4332 15 8 2.5027 -2.2490 2.5199 16 6 2.8577 -1.1176 3.1360 17 6 3.4793 -0.9972 4.5035 18 6 2.3927 -0.8665 5.5395 19 6 1.9285 0.3846 5.9002 20 6 0.9284 0.5043 6.8470 21 6 0.3998 -0.6266 7.4407 22 6 0.8676 -1.8775 7.0837 23 6 1.8643 -1.9975 6.1334 24 7 2.5622 -0.1320 2.3230 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.2491 -1.6318 -1.1525 29 1 3.2486 -2.3962 -4.2418 30 1 4.0746 -1.8863 4.7115 31 1 4.1195 -0.1156 4.5353 32 1 2.3448 1.2685 5.4398 33 1 0.5632 1.4815 7.1261 34 1 -0.3784 -0.5329 8.1836 35 1 0.4549 -2.7611 7.5479 36 1 2.2301 -2.9747 5.8548 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348307532.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:49 Heat of formation + Delta-G solvation = 78.803031 kcal Electronic energy + Delta-G solvation = -19897.285075 eV Core-core repulsion = 16769.999598 eV Total energy + Delta-G solvation = -3127.285478 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.63687 -40.15303 -38.12949 -36.47254 -35.13106 -33.73254 -32.18099 -31.76055 -30.39979 -28.42749 -26.55277 -25.21806 -24.32659 -23.43833 -22.53005 -21.24100 -19.63577 -19.21312 -18.35950 -17.61325 -16.94842 -16.22129 -16.08387 -16.02080 -15.81055 -15.30342 -14.57775 -14.36386 -14.26976 -14.22651 -13.86758 -13.41853 -13.35985 -12.94387 -12.81303 -12.74413 -12.59177 -12.46486 -12.19767 -12.13561 -12.01805 -11.85295 -11.79120 -11.12155 -10.86859 -9.79741 -9.72771 -9.21252 -8.00172 -5.34231 0.13305 0.42784 0.52743 1.20571 1.46378 1.50824 1.56745 1.95407 2.46051 2.64432 2.94299 3.10481 3.35814 3.72977 3.82112 3.97599 4.00673 4.18213 4.31762 4.33770 4.39018 4.46198 4.55570 4.63712 4.74549 4.77784 4.82160 4.97163 5.02931 5.12174 5.19318 5.30820 5.44133 5.57396 5.64540 5.65150 6.11766 6.17100 7.22112 7.26298 7.89813 8.17792 9.23142 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.039625 B = 0.003523 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.460397 B = 7946.221375 C = 8154.767413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.255 3.745 3 H 0.079 0.921 4 N -0.732 5.732 5 C -0.252 4.252 6 H 0.087 0.913 7 C -0.073 4.073 8 N -0.971 5.971 9 Si 0.984 3.016 10 H -0.274 1.274 11 H -0.296 1.296 12 H -0.272 1.272 13 C 0.166 3.834 14 N -0.399 5.399 15 O 0.080 5.920 16 C 0.183 3.817 17 C 0.021 3.979 18 C -0.106 4.106 19 C -0.113 4.113 20 C -0.133 4.133 21 C -0.122 4.122 22 C -0.131 4.131 23 C -0.115 4.115 24 N -0.489 5.489 25 H 0.067 0.933 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.374 0.626 29 H 0.253 0.747 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.030 3.036 24.953 25.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.144 3.856 3 H 0.097 0.903 4 N -0.373 5.373 5 C -0.382 4.382 6 H 0.105 0.895 7 C -0.265 4.265 8 N -0.621 5.621 9 Si 0.811 3.189 10 H -0.200 1.200 11 H -0.222 1.222 12 H -0.198 1.198 13 C -0.108 4.108 14 N -0.106 5.106 15 O 0.020 5.980 16 C -0.037 4.037 17 C -0.017 4.017 18 C -0.107 4.107 19 C -0.131 4.131 20 C -0.151 4.151 21 C -0.139 4.139 22 C -0.149 4.149 23 C -0.133 4.133 24 N -0.223 5.223 25 H 0.086 0.914 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.206 0.794 29 H 0.062 0.938 30 H 0.159 0.841 31 H 0.153 0.847 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.359 3.038 24.087 24.392 hybrid contribution 0.246 -0.224 -1.030 1.082 sum -2.114 2.814 23.057 23.324 Atomic orbital electron populations 1.22228 0.95067 1.01235 1.02078 1.18698 0.93675 0.94211 0.78994 0.90344 1.42562 1.78811 1.10343 1.05615 1.19652 1.36405 0.94700 0.87486 0.89516 1.25721 1.01967 0.96912 1.01950 1.69865 1.51805 1.10552 1.29833 0.85074 0.78277 0.77179 0.78360 1.20023 1.22202 1.19818 1.26367 0.99246 0.87331 0.97872 1.74619 1.17949 1.18713 0.99323 1.85250 1.56121 1.35514 1.21109 1.29500 0.95757 0.79676 0.98807 1.19404 0.95213 1.08730 0.78335 1.19587 0.98917 0.94294 0.97886 1.21339 0.97100 0.97315 0.97340 1.21449 0.96794 0.99894 0.96938 1.21553 0.99897 0.92585 0.99909 1.21473 0.97036 0.98559 0.97864 1.21414 0.96761 0.98687 0.96426 1.71812 1.17450 1.31005 1.02003 0.91382 0.94224 0.91301 0.79372 0.93816 0.84095 0.84731 0.85206 0.84348 0.84042 0.84010 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.69 9.47 71.98 0.68 -5.01 16 2 C 0.25 11.36 3.43 44.25 0.15 11.51 16 3 H 0.08 3.43 8.08 -2.39 -0.02 3.42 16 4 N -0.73 -39.97 5.11 -326.51 -1.67 -41.64 16 5 C -0.25 -14.38 9.93 84.03 0.83 -13.54 16 6 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 7 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 8 N -0.97 -61.62 13.06 21.65 0.28 -61.34 16 9 Si 0.98 46.65 29.55 68.60 2.03 48.68 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 13 C 0.17 6.92 7.01 138.46 0.97 7.89 16 14 N -0.40 -16.81 11.87 -60.31 -0.72 -17.53 16 15 O 0.08 2.73 11.31 74.91 0.85 3.58 16 16 C 0.18 5.25 7.75 88.38 0.68 5.94 16 17 C 0.02 0.36 5.97 29.10 0.17 0.53 16 18 C -0.11 -1.87 5.12 -19.86 -0.10 -1.97 16 19 C -0.11 -2.01 9.70 22.27 0.22 -1.80 16 20 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 21 C -0.12 -1.76 10.05 22.27 0.22 -1.54 16 22 C -0.13 -1.95 10.05 22.27 0.22 -1.72 16 23 C -0.11 -1.86 9.70 22.27 0.22 -1.65 16 24 N -0.49 -17.42 11.55 -303.20 -3.50 -20.92 16 25 H 0.07 2.64 8.14 -2.39 -0.02 2.63 16 26 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.37 22.47 7.56 -92.71 -0.70 21.77 16 29 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.14 1.49 8.09 -2.38 -0.02 1.47 16 31 H 0.13 1.83 8.08 -2.39 -0.02 1.81 16 32 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 33 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 34 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 36 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -73.02 320.16 2.63 -70.39 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.39 Total: 25.84 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 4.97 Total: -7.05 kcal Atomic # 7 Polarization: -135.83 SS G_CDS: -5.60 Total: -141.43 kcal Atomic # 8 Polarization: 2.73 SS G_CDS: 0.85 Total: 3.58 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -73.02 2.63 -70.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348307532.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.195 kcal (2) G-P(sol) polarization free energy of solvation -73.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds