Wall clock time and date at job start Mon Mar 30 2020 01:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08005 * 120.00291 * 114.36412 * 4 2 1 6 6 C 1.37881 * 120.00259 * 294.36743 * 4 2 1 7 7 N 1.31514 * 120.00212 * 156.61898 * 6 4 2 8 8 Si 1.86795 * 119.99775 * 336.88788 * 6 4 2 9 9 H 1.48501 * 109.47165 * 179.72704 * 8 6 4 10 10 H 1.48500 * 109.47318 * 299.72681 * 8 6 4 11 11 H 1.48500 * 109.47076 * 59.72783 * 8 6 4 12 12 N 1.46498 * 109.46908 * 240.00405 * 2 1 3 13 13 C 1.34776 * 119.99973 * 85.00105 * 12 2 1 14 14 O 1.21275 * 120.00093 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99964 * 179.97438 * 13 12 2 16 16 N 1.46500 * 109.47415 * 180.02562 * 15 13 12 17 17 C 1.36041 * 126.34114 * 264.68874 * 16 15 13 18 18 N 1.30112 * 110.09085 * 179.87296 * 17 16 15 19 19 C 1.35773 * 109.64851 * 0.39066 * 18 17 16 20 20 C 1.39744 * 133.60300 * 179.74406 * 19 18 17 21 21 C 1.36602 * 119.88995 * 180.02562 * 20 19 18 22 22 C 1.38780 * 120.66486 * 359.95700 * 21 20 19 23 23 C 1.37855 * 120.45419 * 0.02562 * 22 21 20 24 24 C 1.38050 * 126.35196 * 84.99661 * 16 15 13 25 25 H 1.09007 * 109.46955 * 53.09808 * 1 2 3 26 26 H 1.08994 * 109.47507 * 173.10064 * 1 2 3 27 27 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 28 28 H 0.97003 * 119.99433 * 355.20223 * 7 6 4 29 29 H 0.96999 * 119.99673 * 264.99382 * 12 2 1 30 30 H 1.09007 * 109.46983 * 299.99861 * 15 13 12 31 31 H 1.08994 * 109.47412 * 59.99878 * 15 13 12 32 32 H 1.07997 * 124.95489 * 359.97438 * 17 16 15 33 33 H 1.08004 * 120.05759 * 0.02562 * 20 19 18 34 34 H 1.07999 * 119.66741 * 179.97438 * 21 20 19 35 35 H 1.08008 * 119.77170 * 180.02562 * 22 21 20 36 36 H 1.07995 * 120.15088 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7976 -0.1756 2.4794 7 7 1.8026 -0.9539 3.5395 8 14 1.4651 1.6531 2.6649 9 1 1.2392 1.9724 4.0975 10 1 2.6331 2.4218 2.1647 11 1 0.2588 2.0190 1.8800 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8590 1.1587 -2.4114 15 6 2.6498 -0.7283 -3.5875 16 7 2.6996 0.2132 -4.7088 17 6 1.7370 0.3941 -5.6530 18 7 2.1072 1.3108 -6.4988 19 6 3.3373 1.7749 -6.1598 20 6 4.1908 2.7346 -6.7104 21 6 5.3996 2.9861 -6.1261 22 6 5.7919 2.2977 -4.9867 23 6 4.9662 1.3468 -4.4259 24 6 3.7344 1.0770 -5.0067 25 1 -0.3633 0.6171 -0.8218 26 1 -0.3634 -1.0201 -0.1234 27 1 -0.3633 0.4033 0.9453 28 1 1.9020 -1.9133 3.4363 29 1 2.2490 -1.6317 -1.1527 30 1 3.6492 -1.1201 -3.3980 31 1 1.9777 -1.5505 -3.8327 32 1 0.8012 -0.1435 -5.6934 33 1 3.8952 3.2767 -7.5966 34 1 6.0566 3.7283 -6.5550 35 1 6.7507 2.5083 -4.5363 36 1 5.2765 0.8137 -3.5395 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351832700.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:36 Heat of formation + Delta-G solvation = 15.809443 kcal Electronic energy + Delta-G solvation = -20333.029163 eV Core-core repulsion = 17203.012078 eV Total energy + Delta-G solvation = -3130.017085 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.13071 -40.65538 -38.21493 -36.91894 -35.15475 -34.53223 -32.07217 -31.23357 -30.26408 -28.47769 -26.90554 -24.20876 -23.48168 -22.93097 -21.68563 -21.26485 -19.90321 -18.33082 -18.22464 -18.18779 -16.87957 -16.70185 -16.27126 -16.04397 -15.53503 -15.08507 -14.91606 -14.69133 -14.60896 -14.50573 -14.31813 -13.69516 -13.40264 -13.19492 -12.84425 -12.72385 -12.49066 -12.41847 -12.07210 -11.81257 -11.73048 -11.26071 -10.98042 -10.87225 -10.48825 -10.00918 -9.31802 -9.09227 -8.82660 -6.45052 0.01432 0.55911 1.43120 1.45877 1.47427 1.56219 1.66435 1.84915 2.38406 2.44719 2.92393 2.93179 3.34495 3.61705 3.74198 3.76966 4.06243 4.12800 4.19521 4.45934 4.49602 4.50337 4.62793 4.67080 4.74601 4.83024 5.04564 5.19826 5.38931 5.46183 5.54488 5.57331 5.57566 5.62247 5.95893 6.00280 6.13492 6.50951 6.72506 6.86336 7.22325 7.32941 8.54865 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026860 B = 0.004426 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.207615 B = 6324.659351 C = 6719.174095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.247 3.753 3 H 0.016 0.984 4 C -0.620 4.620 5 H 0.048 0.952 6 C 0.007 3.993 7 N -0.918 5.918 8 Si 1.062 2.938 9 H -0.280 1.280 10 H -0.277 1.277 11 H -0.257 1.257 12 N -0.694 5.694 13 C 0.483 3.517 14 O -0.586 6.586 15 C 0.100 3.900 16 N -0.479 5.479 17 C 0.270 3.730 18 N -0.534 5.534 19 C 0.012 3.988 20 C -0.085 4.085 21 C -0.125 4.125 22 C -0.104 4.104 23 C -0.125 4.125 24 C 0.035 3.965 25 H 0.034 0.966 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.263 0.737 29 H 0.410 0.590 30 H 0.141 0.859 31 H 0.172 0.828 32 H 0.249 0.751 33 H 0.137 0.863 34 H 0.160 0.840 35 H 0.156 0.844 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.001 -0.131 -18.370 19.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.142 3.858 3 H 0.034 0.966 4 C -0.658 4.658 5 H 0.067 0.933 6 C -0.196 4.196 7 N -0.552 5.552 8 Si 0.885 3.115 9 H -0.205 1.205 10 H -0.203 1.203 11 H -0.182 1.182 12 N -0.344 5.344 13 C 0.268 3.732 14 O -0.467 6.467 15 C -0.026 4.026 16 N -0.168 5.168 17 C -0.015 4.015 18 N -0.253 5.253 19 C -0.105 4.105 20 C -0.105 4.105 21 C -0.145 4.145 22 C -0.124 4.124 23 C -0.145 4.145 24 C -0.073 4.073 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.246 0.754 30 H 0.159 0.841 31 H 0.189 0.811 32 H 0.265 0.735 33 H 0.155 0.845 34 H 0.178 0.822 35 H 0.174 0.826 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.067 2.066 -17.852 18.425 hybrid contribution 0.618 -2.130 0.200 2.227 sum 4.685 -0.064 -17.652 18.263 Atomic orbital electron populations 1.22286 0.97618 1.00854 0.99857 1.18683 0.91359 0.92822 0.82917 0.96628 1.22147 1.41089 1.10494 0.92077 0.93339 1.26564 0.92793 1.08294 0.91975 1.70958 1.45309 1.06186 1.32733 0.83785 0.78521 0.72530 0.76668 1.20545 1.20304 1.18225 1.46029 1.64959 1.14477 1.08936 1.21528 0.78265 0.87523 0.85896 1.90726 1.52340 1.18030 1.85581 1.21891 1.07784 0.91137 0.81750 1.45029 1.15277 1.32970 1.23505 1.26070 0.95258 0.95568 0.84619 1.70387 1.12207 1.13518 1.29208 1.19501 0.93747 1.00925 0.96338 1.20319 0.93385 0.96113 1.00660 1.21011 0.96136 1.00986 0.96337 1.21288 1.00150 0.94865 0.96084 1.20272 0.91860 1.01487 1.00914 1.19174 0.92763 0.96411 0.98986 0.94649 0.92355 0.93365 0.92734 0.75407 0.84121 0.81101 0.73480 0.84488 0.82214 0.82599 0.85746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.22 9.20 71.98 0.66 -5.56 16 2 C 0.25 11.12 2.16 44.24 0.10 11.22 16 3 H 0.02 0.80 6.15 -2.38 -0.01 0.79 16 4 C -0.62 -31.97 8.95 25.60 0.23 -31.74 16 5 H 0.05 2.60 7.96 -2.91 -0.02 2.57 16 6 C 0.01 0.37 5.19 84.66 0.44 0.81 16 7 N -0.92 -53.40 13.70 21.45 0.29 -53.10 16 8 Si 1.06 49.51 26.44 68.60 1.81 51.33 16 9 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.26 -11.23 6.14 99.48 0.61 -10.62 16 12 N -0.69 -24.02 5.07 -446.11 -2.26 -26.28 16 13 C 0.48 15.69 7.86 87.66 0.69 16.38 16 14 O -0.59 -25.42 16.09 -3.02 -0.05 -25.47 16 15 C 0.10 2.01 6.64 85.63 0.57 2.58 16 16 N -0.48 -12.48 2.29 -524.33 -1.20 -13.68 16 17 C 0.27 6.77 12.49 180.05 2.25 9.02 16 18 N -0.53 -16.63 11.27 -192.03 -2.16 -18.80 16 19 C 0.01 0.38 7.23 39.45 0.29 0.66 16 20 C -0.09 -2.20 10.05 22.25 0.22 -1.97 16 21 C -0.12 -2.60 9.96 22.02 0.22 -2.38 16 22 C -0.10 -2.27 10.03 22.31 0.22 -2.05 16 23 C -0.12 -3.31 10.05 22.32 0.22 -3.09 16 24 C 0.04 1.06 6.87 38.86 0.27 1.32 16 25 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 26 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.05 2.13 5.47 -2.39 -0.01 2.11 16 28 H 0.26 15.19 8.73 -92.71 -0.81 14.38 16 29 H 0.41 11.60 8.53 -92.71 -0.79 10.81 16 30 H 0.14 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.17 1.79 8.13 -2.39 -0.02 1.77 16 32 H 0.25 3.70 8.06 -2.91 -0.02 3.67 16 33 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 34 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 35 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -76.17 311.61 2.99 -73.18 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.18 Total: 17.62 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 6.38 Total: -4.79 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -5.33 Total: -111.86 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.05 Total: -25.47 kcal Atomic # 14 Polarization: 49.51 SS G_CDS: 1.81 Total: 51.33 kcal Total: -76.17 2.99 -73.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351832700.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.988 kcal (2) G-P(sol) polarization free energy of solvation -76.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds