Wall clock time and date at job start Mon Mar 30 2020 01:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47097 * 2 1 4 4 C 1.50707 * 109.46692 * 240.00368 * 2 1 3 5 5 H 1.07997 * 120.00412 * 275.00321 * 4 2 1 6 6 C 1.37878 * 119.99902 * 95.00630 * 4 2 1 7 7 N 1.31508 * 120.00170 * 184.90962 * 6 4 2 8 8 Si 1.86807 * 119.99876 * 4.91088 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.83582 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.83208 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.83521 * 8 6 4 12 12 N 1.46495 * 109.46950 * 120.00931 * 2 1 3 13 13 C 1.34780 * 119.99388 * 274.99377 * 12 2 1 14 14 O 1.21281 * 120.00277 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99424 * 180.02562 * 13 12 2 16 16 C 1.50700 * 109.46876 * 180.02562 * 15 13 12 17 17 N 1.30245 * 126.10757 * 269.69137 * 16 15 13 18 18 N 1.39870 * 110.08497 * 179.89948 * 17 16 15 19 19 H 0.97008 * 125.45823 * 180.13453 * 18 17 16 20 20 C 1.37036 * 109.07863 * 0.37333 * 18 17 16 21 21 C 1.39287 * 133.84899 * 179.79324 * 20 18 17 22 22 C 1.36591 * 119.84895 * 179.97438 * 21 20 18 23 23 C 1.38967 * 120.81904 * 359.97438 * 22 21 20 24 24 C 1.36468 * 120.62246 * 359.97438 * 23 22 21 25 25 C 1.39942 * 119.63990 * 0.02562 * 24 23 22 26 26 H 1.09006 * 109.47034 * 55.03017 * 1 2 3 27 27 H 1.08993 * 109.47019 * 295.03459 * 1 2 3 28 28 H 1.09001 * 109.47478 * 175.02850 * 1 2 3 29 29 H 0.96999 * 120.00090 * 179.97438 * 7 6 4 30 30 H 0.97000 * 120.00171 * 94.99890 * 12 2 1 31 31 H 1.09000 * 109.47367 * 299.99739 * 15 13 12 32 32 H 1.08997 * 109.47058 * 60.00397 * 15 13 12 33 33 H 1.07998 * 120.08029 * 0.02562 * 21 20 18 34 34 H 1.08002 * 119.59358 * 179.97438 * 22 21 20 35 35 H 1.07997 * 119.68460 * 180.02562 * 23 22 21 36 36 H 1.07999 * 120.17844 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1354 -1.7854 -1.2293 6 6 2.3603 0.0122 -2.3581 7 7 2.7059 -0.6129 -3.4623 8 14 2.3136 1.8793 -2.3173 9 1 3.5992 2.3949 -1.7820 10 1 2.1059 2.3994 -3.6926 11 1 1.1987 2.3276 -1.4448 12 7 2.0183 -0.6908 1.1960 13 6 2.1471 -0.0185 2.3570 14 8 1.8583 1.1582 2.4117 15 6 2.6499 -0.7290 3.5873 16 6 2.7000 0.2391 4.7412 17 7 3.7156 0.9829 5.0755 18 7 3.3962 1.7562 6.1964 19 1 3.9891 2.3893 6.6308 20 6 2.1135 1.4720 6.5860 21 6 1.2941 1.9289 7.6154 22 6 0.0257 1.4384 7.7434 23 6 -0.4620 0.4857 6.8570 24 6 0.3178 0.0204 5.8382 25 6 1.6209 0.5075 5.6861 26 1 -0.3633 0.5890 -0.8422 27 1 -0.3633 0.4348 0.9311 28 1 -0.3634 -1.0238 -0.0891 29 1 2.9363 -0.1045 -4.2556 30 1 2.2490 -1.6319 1.1524 31 1 1.9777 -1.5512 3.8324 32 1 3.6492 -1.1207 3.3977 33 1 1.6603 2.6700 8.3104 34 1 -0.6060 1.7953 8.5434 35 1 -1.4678 0.1107 6.9749 36 1 -0.0684 -0.7204 5.1537 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351841953.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:52 Heat of formation + Delta-G solvation = 39.424578 kcal Electronic energy + Delta-G solvation = -20165.227406 eV Core-core repulsion = 17036.234350 eV Total energy + Delta-G solvation = -3128.993055 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.30392 -38.92296 -37.19550 -34.91841 -33.27649 -32.34729 -30.70953 -29.90839 -29.54217 -27.82283 -25.29263 -23.09385 -22.24584 -21.69510 -19.88983 -19.41454 -17.91708 -17.37896 -16.92467 -16.01517 -15.53643 -15.30027 -14.70485 -14.67974 -14.26440 -13.99879 -13.85171 -13.16212 -12.91434 -12.52481 -12.41719 -12.15895 -11.98047 -11.92916 -11.37169 -11.15538 -11.08067 -10.79904 -10.67718 -10.56027 -10.20340 -9.86848 -9.19562 -9.15977 -8.71206 -8.68546 -8.07820 -8.01832 -6.22862 -4.26367 0.90487 1.45995 2.42457 2.66924 3.25653 3.30466 3.35498 3.43414 3.70891 4.07812 4.33811 4.44874 4.50792 4.67994 4.88580 5.11249 5.14774 5.30212 5.38920 5.46087 5.52100 5.64631 5.77403 5.91633 6.25686 6.35518 6.41214 6.44438 6.54056 6.69521 6.79236 6.95881 7.20263 7.26979 7.39412 7.56686 7.61759 8.14203 8.57557 8.77860 8.99216 9.39638 10.88839 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029905 B = 0.004212 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.070179 B = 6646.523751 C = 6848.448318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.231 3.769 3 H 0.049 0.951 4 C -0.530 4.530 5 H 0.080 0.920 6 C 0.082 3.918 7 N -0.889 5.889 8 Si 0.873 3.127 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.703 5.703 13 C 0.506 3.494 14 O -0.549 6.549 15 C -0.069 4.069 16 C 0.133 3.867 17 N -0.240 5.240 18 N -0.511 5.511 19 H 0.438 0.562 20 C 0.129 3.871 21 C -0.146 4.146 22 C -0.072 4.072 23 C -0.164 4.164 24 C -0.033 4.033 25 C -0.163 4.163 26 H 0.051 0.949 27 H 0.029 0.971 28 H 0.047 0.953 29 H 0.268 0.732 30 H 0.394 0.606 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.288 0.329 21.603 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.129 3.871 3 H 0.067 0.933 4 C -0.568 4.568 5 H 0.098 0.902 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.700 3.300 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.352 5.352 13 C 0.289 3.711 14 O -0.428 6.428 15 C -0.111 4.111 16 C -0.045 4.045 17 N -0.054 5.054 18 N -0.225 5.225 19 H 0.282 0.718 20 C 0.013 3.987 21 C -0.169 4.169 22 C -0.093 4.093 23 C -0.184 4.184 24 C -0.054 4.054 25 C -0.171 4.171 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.228 0.772 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.203 1.541 21.123 21.293 hybrid contribution -0.269 0.772 0.264 0.859 sum -2.472 2.313 21.387 21.653 Atomic orbital electron populations 1.22211 0.98574 1.00555 0.99241 1.19124 0.90919 0.94346 0.82728 0.93298 1.21016 1.45212 0.95646 0.94914 0.90241 1.24930 0.93598 0.98563 0.95175 1.69876 1.44785 1.36182 1.01692 0.86909 0.79841 0.85944 0.77300 1.19869 1.21191 1.18516 1.46592 1.65079 1.13909 1.09607 1.20179 0.78865 0.87579 0.84450 1.90686 1.50972 1.16014 1.85089 1.20168 1.05036 0.96251 0.89656 1.22760 0.89944 0.96477 0.95361 1.76545 1.23342 1.05739 0.99782 1.45841 1.11152 1.39279 1.26238 0.71773 1.18846 0.86779 0.96658 0.96465 1.19782 0.94364 1.04036 0.98675 1.20685 0.94413 0.95721 0.98439 1.20636 1.00442 1.00392 0.96938 1.20389 0.90980 0.97608 0.96396 1.19730 0.96321 1.02708 0.98326 0.92995 0.95213 0.93361 0.92242 0.77226 0.86903 0.86963 0.85903 0.85548 0.85663 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.47 37.16 0.35 -2.86 16 2 C 0.23 5.49 2.22 -69.08 -0.15 5.34 16 3 H 0.05 1.29 4.73 -51.93 -0.25 1.04 16 4 C -0.53 -14.16 9.05 -34.44 -0.31 -14.47 16 5 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 6 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 7 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 8 Si 0.87 21.85 26.99 -169.99 -4.59 17.26 16 9 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.26 -6.46 6.82 56.52 0.39 -6.08 16 12 N -0.70 -13.78 5.07 -54.93 -0.28 -14.06 16 13 C 0.51 9.65 7.79 -10.98 -0.09 9.57 16 14 O -0.55 -12.92 15.70 5.56 0.09 -12.84 16 15 C -0.07 -0.97 6.30 -29.03 -0.18 -1.15 16 16 C 0.13 2.11 5.93 -80.19 -0.48 1.63 16 17 N -0.24 -3.93 12.55 34.84 0.44 -3.49 16 18 N -0.51 -6.88 7.37 32.36 0.24 -6.64 16 19 H 0.44 4.33 8.96 -182.76 -1.64 2.69 16 20 C 0.13 1.74 7.34 -84.18 -0.62 1.12 16 21 C -0.15 -1.56 10.03 -39.79 -0.40 -1.96 16 22 C -0.07 -0.69 9.96 -39.91 -0.40 -1.09 16 23 C -0.16 -1.70 9.97 -39.95 -0.40 -2.10 16 24 C -0.03 -0.41 10.07 -39.58 -0.40 -0.81 16 25 C -0.16 -2.40 6.33 -105.21 -0.67 -3.06 16 26 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.39 6.57 8.59 -40.82 -0.35 6.22 16 31 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 314.16 15.07 4.73 4.73 Total: -1.00 -34.76 314.16 -8.04 -42.80 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.61 Total: 5.25 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -3.83 Total: -7.64 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 1.17 Total: -49.58 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.59 Total: 17.26 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.76 -8.04 -42.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351841953.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.229 kcal (2) G-P(sol) polarization free energy of solvation -34.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds