Wall clock time and date at job start Mon Mar 30 2020 01:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47097 * 2 1 4 4 C 1.50707 * 109.46692 * 240.00368 * 2 1 3 5 5 H 1.07997 * 120.00412 * 275.00321 * 4 2 1 6 6 C 1.37878 * 119.99902 * 95.00630 * 4 2 1 7 7 N 1.31508 * 120.00170 * 184.90962 * 6 4 2 8 8 Si 1.86807 * 119.99876 * 4.91088 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.83582 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.83208 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.83521 * 8 6 4 12 12 N 1.46495 * 109.46950 * 120.00931 * 2 1 3 13 13 C 1.34780 * 119.99388 * 274.99377 * 12 2 1 14 14 O 1.21281 * 120.00277 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99424 * 180.02562 * 13 12 2 16 16 C 1.50700 * 109.46876 * 180.02562 * 15 13 12 17 17 N 1.30245 * 126.10757 * 269.69137 * 16 15 13 18 18 N 1.39870 * 110.08497 * 179.89948 * 17 16 15 19 19 H 0.97008 * 125.45823 * 180.13453 * 18 17 16 20 20 C 1.37036 * 109.07863 * 0.37333 * 18 17 16 21 21 C 1.39287 * 133.84899 * 179.79324 * 20 18 17 22 22 C 1.36591 * 119.84895 * 179.97438 * 21 20 18 23 23 C 1.38967 * 120.81904 * 359.97438 * 22 21 20 24 24 C 1.36468 * 120.62246 * 359.97438 * 23 22 21 25 25 C 1.39942 * 119.63990 * 0.02562 * 24 23 22 26 26 H 1.09006 * 109.47034 * 55.03017 * 1 2 3 27 27 H 1.08993 * 109.47019 * 295.03459 * 1 2 3 28 28 H 1.09001 * 109.47478 * 175.02850 * 1 2 3 29 29 H 0.96999 * 120.00090 * 179.97438 * 7 6 4 30 30 H 0.97000 * 120.00171 * 94.99890 * 12 2 1 31 31 H 1.09000 * 109.47367 * 299.99739 * 15 13 12 32 32 H 1.08997 * 109.47058 * 60.00397 * 15 13 12 33 33 H 1.07998 * 120.08029 * 0.02562 * 21 20 18 34 34 H 1.08002 * 119.59358 * 179.97438 * 22 21 20 35 35 H 1.07997 * 119.68460 * 180.02562 * 23 22 21 36 36 H 1.07999 * 120.17844 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1354 -1.7854 -1.2293 6 6 2.3603 0.0122 -2.3581 7 7 2.7059 -0.6129 -3.4623 8 14 2.3136 1.8793 -2.3173 9 1 3.5992 2.3949 -1.7820 10 1 2.1059 2.3994 -3.6926 11 1 1.1987 2.3276 -1.4448 12 7 2.0183 -0.6908 1.1960 13 6 2.1471 -0.0185 2.3570 14 8 1.8583 1.1582 2.4117 15 6 2.6499 -0.7290 3.5873 16 6 2.7000 0.2391 4.7412 17 7 3.7156 0.9829 5.0755 18 7 3.3962 1.7562 6.1964 19 1 3.9891 2.3893 6.6308 20 6 2.1135 1.4720 6.5860 21 6 1.2941 1.9289 7.6154 22 6 0.0257 1.4384 7.7434 23 6 -0.4620 0.4857 6.8570 24 6 0.3178 0.0204 5.8382 25 6 1.6209 0.5075 5.6861 26 1 -0.3633 0.5890 -0.8422 27 1 -0.3633 0.4348 0.9311 28 1 -0.3634 -1.0238 -0.0891 29 1 2.9363 -0.1045 -4.2556 30 1 2.2490 -1.6319 1.1524 31 1 1.9777 -1.5512 3.8324 32 1 3.6492 -1.1207 3.3977 33 1 1.6603 2.6700 8.3104 34 1 -0.6060 1.7953 8.5434 35 1 -1.4678 0.1107 6.9749 36 1 -0.0684 -0.7204 5.1537 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351841953.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:52 Heat of formation + Delta-G solvation = 14.390350 kcal Electronic energy + Delta-G solvation = -20166.312971 eV Core-core repulsion = 17036.234350 eV Total energy + Delta-G solvation = -3130.078621 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.27679 -40.49244 -38.07368 -36.72239 -34.45064 -34.28255 -32.07068 -31.01232 -30.60911 -29.02025 -27.30934 -23.97912 -23.35761 -23.07040 -21.47261 -20.79543 -19.24870 -18.80845 -17.84039 -17.70024 -17.25011 -16.17669 -16.04491 -15.96766 -15.61924 -15.27966 -14.82517 -14.68887 -14.47171 -14.27263 -14.04486 -13.50607 -13.06013 -12.97011 -12.81505 -12.78596 -12.77864 -12.42164 -11.97096 -11.88885 -11.71098 -11.26369 -11.21153 -10.86253 -10.67901 -9.78948 -9.63118 -8.92765 -8.39083 -6.44016 0.00768 0.59316 1.26838 1.32305 1.36718 1.42658 1.74246 1.79445 2.26119 2.55258 2.90180 3.06259 3.40264 3.58886 3.78483 4.05165 4.17627 4.35122 4.48027 4.49997 4.51123 4.53137 4.68232 4.76547 4.85684 4.97907 5.09758 5.13359 5.38923 5.40219 5.47824 5.53854 5.63244 5.77026 5.98614 6.13925 6.39998 6.60294 6.61608 6.92778 7.22140 7.50019 8.75885 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029905 B = 0.004212 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.070179 B = 6646.523751 C = 6848.448318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.233 3.767 3 H 0.024 0.976 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.036 3.964 7 N -0.928 5.928 8 Si 0.922 3.078 9 H -0.279 1.279 10 H -0.276 1.276 11 H -0.259 1.259 12 N -0.700 5.700 13 C 0.508 3.492 14 O -0.595 6.595 15 C -0.057 4.057 16 C 0.114 3.886 17 N -0.276 5.276 18 N -0.509 5.509 19 H 0.449 0.551 20 C 0.109 3.891 21 C -0.151 4.151 22 C -0.067 4.067 23 C -0.161 4.161 24 C -0.054 4.054 25 C -0.193 4.193 26 H 0.044 0.956 27 H 0.037 0.963 28 H 0.062 0.938 29 H 0.270 0.730 30 H 0.410 0.590 31 H 0.153 0.847 32 H 0.132 0.868 33 H 0.150 0.850 34 H 0.163 0.837 35 H 0.153 0.847 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.645 0.404 23.989 24.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.129 3.871 3 H 0.042 0.958 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.165 4.165 7 N -0.567 5.567 8 Si 0.748 3.252 9 H -0.205 1.205 10 H -0.201 1.201 11 H -0.184 1.184 12 N -0.350 5.350 13 C 0.294 3.706 14 O -0.477 6.477 15 C -0.099 4.099 16 C -0.064 4.064 17 N -0.090 5.090 18 N -0.225 5.225 19 H 0.295 0.705 20 C -0.007 4.007 21 C -0.173 4.173 22 C -0.088 4.088 23 C -0.180 4.180 24 C -0.074 4.074 25 C -0.201 4.201 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.246 0.754 31 H 0.171 0.829 32 H 0.150 0.850 33 H 0.167 0.833 34 H 0.181 0.819 35 H 0.171 0.829 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.555 1.590 23.532 23.852 hybrid contribution 0.099 0.729 -0.339 0.810 sum -3.456 2.319 23.193 23.564 Atomic orbital electron populations 1.22089 0.96920 1.01467 0.99334 1.18872 0.92120 0.92913 0.83165 0.95822 1.21217 1.44009 0.95017 0.95905 0.91938 1.25537 0.93934 1.01873 0.95143 1.69961 1.46792 1.37547 1.02422 0.86131 0.79405 0.82103 0.77580 1.20491 1.20136 1.18354 1.46295 1.65194 1.14597 1.08872 1.20911 0.77477 0.87015 0.85246 1.90663 1.52857 1.18267 1.85879 1.20180 1.06768 0.96332 0.86587 1.23036 0.90492 0.96832 0.96054 1.76415 1.24585 1.06775 1.01267 1.45816 1.11701 1.39232 1.25748 0.70507 1.19276 0.86898 0.97080 0.97397 1.20206 0.94480 1.04363 0.98222 1.21182 0.94253 0.94603 0.98734 1.21070 1.01343 0.99726 0.95902 1.20666 0.90547 0.98506 0.97671 1.20044 0.97255 1.03967 0.98829 0.93738 0.94421 0.91857 0.92046 0.75406 0.82928 0.85028 0.83266 0.81927 0.82905 0.84457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.92 9.47 71.98 0.68 -5.24 16 2 C 0.23 10.98 2.22 44.25 0.10 11.08 16 3 H 0.02 1.25 4.73 -2.39 -0.01 1.24 16 4 C -0.52 -28.00 9.05 25.60 0.23 -27.77 16 5 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 6 C 0.04 2.01 5.47 84.66 0.46 2.47 16 7 N -0.93 -55.24 13.96 21.45 0.30 -54.94 16 8 Si 0.92 45.41 26.99 68.60 1.85 47.26 16 9 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.26 -12.58 6.82 99.48 0.68 -11.90 16 12 N -0.70 -26.72 5.07 -446.09 -2.26 -28.98 16 13 C 0.51 18.90 7.79 87.66 0.68 19.59 16 14 O -0.60 -28.02 15.70 -3.03 -0.05 -28.06 16 15 C -0.06 -1.52 6.30 29.10 0.18 -1.33 16 16 C 0.11 3.53 5.93 44.79 0.27 3.80 16 17 N -0.28 -9.02 12.55 -43.70 -0.55 -9.57 16 18 N -0.51 -13.54 7.37 -51.54 -0.38 -13.92 16 19 H 0.45 8.78 8.96 -213.46 -1.91 6.87 16 20 C 0.11 2.83 7.34 39.21 0.29 3.11 16 21 C -0.15 -2.82 10.03 22.14 0.22 -2.60 16 22 C -0.07 -1.05 9.96 22.06 0.22 -0.83 16 23 C -0.16 -2.82 9.97 22.03 0.22 -2.60 16 24 C -0.05 -1.22 10.07 22.27 0.22 -1.00 16 25 C -0.19 -5.48 6.33 -20.25 -0.13 -5.61 16 26 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 27 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.41 13.06 8.59 -92.71 -0.80 12.26 16 31 H 0.15 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 33 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 35 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 36 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -76.25 314.16 0.95 -75.30 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -1.61 Total: 19.85 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 3.65 Total: -6.93 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -2.89 Total: -107.42 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.05 Total: -28.06 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.85 Total: 47.26 kcal Total: -76.25 0.95 -75.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351841953.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.692 kcal (2) G-P(sol) polarization free energy of solvation -76.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds