Wall clock time and date at job start Mon Mar 30 2020 01:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47395 * 2 1 4 4 C 1.47195 * 109.47304 * 120.01015 * 2 1 3 5 5 N 2.60794 * 109.47153 * 120.00770 * 2 1 3 6 6 C 1.50702 * 109.46742 * 240.00977 * 2 1 3 7 7 O 1.21285 * 119.99834 * 335.22096 * 6 2 1 8 8 N 1.34771 * 120.00192 * 155.50001 * 6 2 1 9 9 C 1.46505 * 120.00206 * 4.86041 * 8 6 2 10 10 C 1.50698 * 109.47012 * 89.99760 * 9 8 6 11 11 H 1.08003 * 120.00367 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00160 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99718 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00340 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46637 * 60.00181 * 14 12 10 16 16 H 1.48498 * 109.47273 * 179.97438 * 14 12 10 17 17 H 1.48491 * 109.47257 * 300.00333 * 14 12 10 18 18 C 1.46504 * 120.00171 * 184.86077 * 8 6 2 19 19 C 1.50695 * 109.47218 * 94.09876 * 18 8 6 20 20 C 1.38232 * 119.61726 * 95.22461 * 19 18 8 21 21 C 1.38630 * 119.16037 * 179.75628 * 20 19 18 22 22 C 1.38673 * 118.41679 * 0.50843 * 21 20 19 23 23 C 1.38179 * 119.16385 * 359.73176 * 22 21 20 24 24 N 1.31846 * 119.61900 * 275.49831 * 19 18 8 25 25 H 1.09003 * 109.46578 * 299.99305 * 1 2 3 26 26 H 1.09002 * 109.47053 * 59.99134 * 1 2 3 27 27 H 1.08999 * 109.47376 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47579 * 209.99946 * 9 8 6 29 29 H 1.09007 * 109.46511 * 330.00261 * 9 8 6 30 30 H 0.97003 * 120.00535 * 179.97438 * 13 12 10 31 31 H 1.09007 * 109.46989 * 214.09780 * 18 8 6 32 32 H 1.08999 * 109.46985 * 334.09639 * 18 8 6 33 33 H 1.08000 * 120.41863 * 359.97438 * 20 19 18 34 34 H 1.07997 * 120.78982 * 180.26109 * 21 20 19 35 35 H 1.08000 * 120.41722 * 179.71180 * 22 21 20 36 36 H 1.08003 * 119.61315 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6941 1.2017 5 7 2.3994 -1.2297 2.1292 6 6 2.0323 -0.7102 -1.2306 7 8 1.3352 -1.5362 -1.7810 8 7 3.2582 -0.4317 -1.7163 9 6 4.1441 0.4812 -0.9895 10 6 4.9844 -0.3036 -0.0154 11 1 4.8703 -1.3753 0.0551 12 6 5.8988 0.3464 0.7860 13 7 6.0373 1.6515 0.7007 14 14 6.9399 -0.6263 1.9941 15 1 7.7556 -1.6225 1.2542 16 1 7.8379 0.2990 2.7307 17 1 6.0544 -1.3287 2.9571 18 6 3.7051 -1.0418 -2.9711 19 6 3.4118 -0.1074 -4.1164 20 6 4.3977 0.7497 -4.5684 21 6 4.1193 1.6017 -5.6259 22 6 2.8506 1.5672 -6.1848 23 6 1.9146 0.6870 -5.6764 24 7 2.2163 -0.1129 -4.6722 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 4.7938 0.9968 -1.6966 29 1 3.5455 1.2124 -0.4462 30 1 6.6804 2.1090 1.2647 31 1 4.7775 -1.2306 -2.9216 32 1 3.1773 -1.9829 -3.1256 33 1 5.3736 0.7530 -4.1058 34 1 4.8712 2.2791 -6.0028 35 1 2.5973 2.2202 -7.0068 36 1 0.9244 0.6538 -6.1065 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357907143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:01 Heat of formation + Delta-G solvation = 27.742315 kcal Electronic energy + Delta-G solvation = -20788.873266 eV Core-core repulsion = 17659.373630 eV Total energy + Delta-G solvation = -3129.499636 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.15880 -39.23517 -35.95946 -35.29652 -33.01789 -32.50494 -32.21807 -31.29486 -27.74492 -26.54376 -24.37525 -23.41349 -22.87618 -21.88741 -19.37854 -17.30376 -16.96756 -16.50881 -16.21729 -15.97411 -15.57921 -15.28227 -14.51792 -14.00135 -13.63485 -13.53157 -13.23694 -12.94915 -12.79628 -12.46930 -12.30541 -12.08982 -11.77731 -11.73847 -11.51364 -11.39314 -11.28243 -11.03560 -10.94165 -10.60135 -10.20137 -9.87079 -9.70463 -9.26881 -9.19581 -8.80173 -8.57475 -7.89561 -6.23366 -4.30350 1.24257 1.46876 2.94986 3.25463 3.29248 3.37104 3.37776 3.49347 3.78526 4.19391 4.33973 4.50910 4.61451 4.93784 4.97606 5.11458 5.15438 5.21476 5.31836 5.36314 5.47606 5.72740 5.78609 5.92272 5.97941 6.04296 6.19008 6.31245 6.35079 6.36418 6.59709 6.87037 7.03653 7.35927 7.71723 7.96604 8.11330 8.21662 8.26303 8.69243 8.85141 9.39085 10.83195 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.015561 B = 0.007043 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.967342 B = 3974.378280 C = 5251.654422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.009 4.009 3 H 0.133 0.867 4 C 0.230 3.770 5 N -0.420 5.420 6 C 0.529 3.471 7 O -0.541 6.541 8 N -0.586 5.586 9 C 0.234 3.766 10 C -0.537 4.537 11 H 0.060 0.940 12 C 0.072 3.928 13 N -0.890 5.890 14 Si 0.889 3.111 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.271 1.271 18 C 0.166 3.834 19 C 0.119 3.881 20 C -0.153 4.153 21 C -0.080 4.080 22 C -0.181 4.181 23 C 0.092 3.908 24 N -0.463 5.463 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.038 0.962 30 H 0.266 0.734 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.904 2.950 -11.026 12.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.034 4.034 3 H 0.150 0.850 4 C -0.089 4.089 5 N -0.096 5.096 6 C 0.314 3.686 7 O -0.418 6.418 8 N -0.316 5.316 9 C 0.115 3.885 10 C -0.576 4.576 11 H 0.078 0.922 12 C -0.132 4.132 13 N -0.528 5.528 14 Si 0.716 3.284 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.196 1.196 18 C 0.042 3.958 19 C -0.020 4.020 20 C -0.174 4.174 21 C -0.106 4.106 22 C -0.201 4.201 23 C -0.065 4.065 24 N -0.172 5.172 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.156 0.844 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.198 1.291 -9.500 11.416 hybrid contribution 1.455 0.697 -0.024 1.614 sum -4.743 1.988 -9.524 10.824 Atomic orbital electron populations 1.21621 0.90441 1.03945 1.02761 1.18848 0.97748 1.00486 0.86275 0.84959 1.27933 0.93228 0.93906 0.93852 1.81081 1.07605 1.08983 1.11942 1.19809 0.81710 0.82600 0.84519 1.90655 1.56809 1.33502 1.60843 1.48151 1.14912 1.46931 1.21653 1.19553 0.88859 0.88349 0.91734 1.21368 1.20965 0.94422 1.20838 0.92169 1.24850 0.96718 0.94831 0.96765 1.69893 1.35730 1.07476 1.39702 0.86662 0.80217 0.79972 0.81520 1.20057 1.21109 1.19648 1.20164 1.00985 0.94636 0.80044 1.21838 0.88911 0.95675 0.95534 1.22135 1.01427 0.96481 0.97329 1.21560 0.96690 0.97353 0.94985 1.22096 0.94859 1.01103 1.02013 1.22747 0.99336 0.91754 0.92679 1.67607 1.19824 1.21552 1.08219 0.91472 0.90703 0.90951 0.94201 0.94384 0.92443 0.88573 0.88655 0.84359 0.85094 0.85306 0.83212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 8.68 37.16 0.32 -1.45 16 2 C -0.01 -0.16 2.39 -94.56 -0.23 -0.39 16 3 H 0.13 2.16 6.22 -51.93 -0.32 1.84 16 4 C 0.23 4.67 13.57 -20.76 -0.28 4.39 16 5 N -0.42 -9.52 18.54 42.15 0.78 -8.74 16 6 C 0.53 10.45 6.74 -10.99 -0.07 10.38 16 7 O -0.54 -11.55 15.59 5.55 0.09 -11.46 16 8 N -0.59 -11.66 2.44 -176.43 -0.43 -12.09 16 9 C 0.23 5.19 4.93 -5.19 -0.03 5.16 16 10 C -0.54 -13.56 8.51 -34.44 -0.29 -13.85 16 11 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 12 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 13 N -0.89 -23.89 13.29 55.43 0.74 -23.15 16 14 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 18 C 0.17 2.96 5.80 -5.19 -0.03 2.93 16 19 C 0.12 1.96 6.36 -82.59 -0.53 1.44 16 20 C -0.15 -2.20 9.72 -39.44 -0.38 -2.58 16 21 C -0.08 -0.96 10.18 -39.28 -0.40 -1.35 16 22 C -0.18 -2.03 10.11 -39.44 -0.40 -2.43 16 23 C 0.09 1.21 11.18 -17.55 -0.20 1.02 16 24 N -0.46 -7.67 10.27 -9.48 -0.10 -7.77 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.07 1.05 7.87 -51.93 -0.41 0.64 16 28 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 29 H 0.04 0.86 5.82 -51.92 -0.30 0.56 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.10 1.61 8.00 -51.92 -0.42 1.20 16 32 H 0.10 1.77 7.24 -51.93 -0.38 1.39 16 33 H 0.14 1.90 8.06 -52.49 -0.42 1.47 16 34 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.15 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 322.48 15.07 4.86 4.86 Total: -1.00 -31.08 322.48 -6.02 -37.10 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -4.33 Total: 0.00 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -2.61 Total: 5.05 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.99 Total: -51.75 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.08 -6.02 -37.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357907143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.838 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds