Wall clock time and date at job start Mon Mar 30 2020 01:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47395 * 2 1 4 4 C 1.47195 * 109.47304 * 120.01015 * 2 1 3 5 5 N 2.60794 * 109.47153 * 120.00770 * 2 1 3 6 6 C 1.50702 * 109.46742 * 240.00977 * 2 1 3 7 7 O 1.21285 * 119.99834 * 335.22096 * 6 2 1 8 8 N 1.34771 * 120.00192 * 155.50001 * 6 2 1 9 9 C 1.46505 * 120.00206 * 4.86041 * 8 6 2 10 10 C 1.50698 * 109.47012 * 89.99760 * 9 8 6 11 11 H 1.08003 * 120.00367 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00160 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99718 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00340 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46637 * 60.00181 * 14 12 10 16 16 H 1.48498 * 109.47273 * 179.97438 * 14 12 10 17 17 H 1.48491 * 109.47257 * 300.00333 * 14 12 10 18 18 C 1.46504 * 120.00171 * 184.86077 * 8 6 2 19 19 C 1.50695 * 109.47218 * 94.09876 * 18 8 6 20 20 C 1.38232 * 119.61726 * 95.22461 * 19 18 8 21 21 C 1.38630 * 119.16037 * 179.75628 * 20 19 18 22 22 C 1.38673 * 118.41679 * 0.50843 * 21 20 19 23 23 C 1.38179 * 119.16385 * 359.73176 * 22 21 20 24 24 N 1.31846 * 119.61900 * 275.49831 * 19 18 8 25 25 H 1.09003 * 109.46578 * 299.99305 * 1 2 3 26 26 H 1.09002 * 109.47053 * 59.99134 * 1 2 3 27 27 H 1.08999 * 109.47376 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47579 * 209.99946 * 9 8 6 29 29 H 1.09007 * 109.46511 * 330.00261 * 9 8 6 30 30 H 0.97003 * 120.00535 * 179.97438 * 13 12 10 31 31 H 1.09007 * 109.46989 * 214.09780 * 18 8 6 32 32 H 1.08999 * 109.46985 * 334.09639 * 18 8 6 33 33 H 1.08000 * 120.41863 * 359.97438 * 20 19 18 34 34 H 1.07997 * 120.78982 * 180.26109 * 21 20 19 35 35 H 1.08000 * 120.41722 * 179.71180 * 22 21 20 36 36 H 1.08003 * 119.61315 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6941 1.2017 5 7 2.3994 -1.2297 2.1292 6 6 2.0323 -0.7102 -1.2306 7 8 1.3352 -1.5362 -1.7810 8 7 3.2582 -0.4317 -1.7163 9 6 4.1441 0.4812 -0.9895 10 6 4.9844 -0.3036 -0.0154 11 1 4.8703 -1.3753 0.0551 12 6 5.8988 0.3464 0.7860 13 7 6.0373 1.6515 0.7007 14 14 6.9399 -0.6263 1.9941 15 1 7.7556 -1.6225 1.2542 16 1 7.8379 0.2990 2.7307 17 1 6.0544 -1.3287 2.9571 18 6 3.7051 -1.0418 -2.9711 19 6 3.4118 -0.1074 -4.1164 20 6 4.3977 0.7497 -4.5684 21 6 4.1193 1.6017 -5.6259 22 6 2.8506 1.5672 -6.1848 23 6 1.9146 0.6870 -5.6764 24 7 2.2163 -0.1129 -4.6722 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 4.7938 0.9968 -1.6966 29 1 3.5455 1.2124 -0.4462 30 1 6.6804 2.1090 1.2647 31 1 4.7775 -1.2306 -2.9216 32 1 3.1773 -1.9829 -3.1256 33 1 5.3736 0.7530 -4.1058 34 1 4.8712 2.2791 -6.0028 35 1 2.5973 2.2202 -7.0068 36 1 0.9244 0.6538 -6.1065 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357907143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:01 Heat of formation + Delta-G solvation = 9.349946 kcal Electronic energy + Delta-G solvation = -20789.670819 eV Core-core repulsion = 17659.373630 eV Total energy + Delta-G solvation = -3130.297189 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.43191 -40.58641 -37.60113 -36.92805 -34.75573 -34.06985 -33.28437 -32.51993 -29.43371 -27.97485 -25.71674 -24.90418 -24.20983 -23.06801 -20.91283 -19.04366 -18.41572 -18.07996 -17.57110 -17.23975 -16.92303 -16.44267 -16.37363 -15.41127 -15.04882 -15.01660 -14.50783 -14.30516 -14.17451 -13.92310 -13.76960 -13.64064 -13.48644 -13.26087 -12.89077 -12.79742 -12.74546 -12.65389 -12.54924 -12.28636 -11.98920 -11.76697 -10.88340 -10.72502 -10.55975 -10.31003 -9.88602 -9.52718 -8.24826 -6.34935 0.19871 0.47299 1.32438 1.33618 1.36521 1.44401 1.80955 1.89651 2.26586 2.41735 3.04657 3.06106 3.08880 3.44854 3.60157 3.91333 4.04537 4.10699 4.13184 4.26656 4.33179 4.55606 4.66409 4.83513 4.85159 4.87599 4.93589 4.94734 5.19590 5.27716 5.30915 5.36176 5.59958 5.76904 5.88376 6.02217 6.46263 6.59211 6.76002 7.18956 7.20262 7.37461 8.80140 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.015561 B = 0.007043 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.967342 B = 3974.378280 C = 5251.654422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.009 4.009 3 H 0.147 0.853 4 C 0.244 3.756 5 N -0.465 5.465 6 C 0.523 3.477 7 O -0.559 6.559 8 N -0.588 5.588 9 C 0.251 3.749 10 C -0.536 4.536 11 H 0.041 0.959 12 C 0.038 3.962 13 N -0.908 5.908 14 Si 0.929 3.071 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.289 1.289 18 C 0.166 3.834 19 C 0.097 3.903 20 C -0.164 4.164 21 C -0.078 4.078 22 C -0.164 4.164 23 C 0.081 3.919 24 N -0.498 5.498 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.268 0.732 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.137 0.863 34 H 0.163 0.837 35 H 0.170 0.830 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.380 4.544 -12.598 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.033 4.033 3 H 0.164 0.836 4 C -0.074 4.074 5 N -0.142 5.142 6 C 0.309 3.691 7 O -0.438 6.438 8 N -0.318 5.318 9 C 0.130 3.870 10 C -0.575 4.575 11 H 0.059 0.941 12 C -0.164 4.164 13 N -0.547 5.547 14 Si 0.755 3.245 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.216 1.216 18 C 0.042 3.958 19 C -0.041 4.041 20 C -0.185 4.185 21 C -0.104 4.104 22 C -0.184 4.184 23 C -0.076 4.076 24 N -0.208 5.208 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.155 0.845 34 H 0.180 0.820 35 H 0.187 0.813 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.661 2.880 -11.085 13.249 hybrid contribution 1.566 0.204 0.346 1.617 sum -5.095 3.084 -10.738 12.279 Atomic orbital electron populations 1.21659 0.87336 1.04051 1.04949 1.19115 1.00199 1.00210 0.83761 0.83624 1.28502 0.92032 0.92983 0.93849 1.81084 1.09165 1.10421 1.13550 1.20191 0.81460 0.82414 0.85011 1.90641 1.57179 1.34307 1.61640 1.48145 1.14733 1.46589 1.22284 1.19211 0.88613 0.88100 0.91036 1.21472 1.21171 0.93647 1.21206 0.94080 1.25300 0.97673 0.95469 0.97909 1.69929 1.36366 1.07986 1.40413 0.86054 0.79172 0.79269 0.79956 1.19402 1.20094 1.21565 1.20166 1.00731 0.94643 0.80242 1.21497 0.89957 0.96743 0.95945 1.22193 1.00926 0.96917 0.98431 1.21964 0.97877 0.96755 0.93760 1.22517 0.93777 1.00125 1.01954 1.23271 1.00995 0.91459 0.91902 1.67510 1.20121 1.23303 1.09908 0.88686 0.89109 0.91880 0.94618 0.94490 0.92304 0.88475 0.90133 0.84534 0.81964 0.81299 0.80745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.11 8.68 71.98 0.62 -2.48 16 2 C -0.01 -0.29 2.39 -13.34 -0.03 -0.33 16 3 H 0.15 4.57 6.22 -2.39 -0.01 4.55 16 4 C 0.24 9.92 13.57 89.44 1.21 11.13 16 5 N -0.47 -21.31 18.54 20.00 0.37 -20.94 16 6 C 0.52 20.70 6.74 87.66 0.59 21.29 16 7 O -0.56 -24.02 15.59 -3.05 -0.05 -24.07 16 8 N -0.59 -23.58 2.44 -830.48 -2.03 -25.61 16 9 C 0.25 11.10 4.93 85.63 0.42 11.53 16 10 C -0.54 -27.24 8.51 25.60 0.22 -27.02 16 11 H 0.04 2.22 7.81 -2.91 -0.02 2.20 16 12 C 0.04 1.99 5.46 84.66 0.46 2.45 16 13 N -0.91 -48.30 13.29 21.45 0.28 -48.01 16 14 Si 0.93 43.53 29.54 68.60 2.03 45.56 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 16 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 17 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 18 C 0.17 6.07 5.80 85.63 0.50 6.56 16 19 C 0.10 3.16 6.36 42.55 0.27 3.43 16 20 C -0.16 -4.53 9.72 22.36 0.22 -4.32 16 21 C -0.08 -1.62 10.18 22.47 0.23 -1.39 16 22 C -0.16 -3.07 10.11 22.36 0.23 -2.85 16 23 C 0.08 1.93 11.18 84.67 0.95 2.88 16 24 N -0.50 -16.16 10.27 -183.89 -1.89 -18.05 16 25 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.06 1.75 7.87 -2.39 -0.02 1.73 16 28 H 0.04 1.62 8.07 -2.39 -0.02 1.61 16 29 H 0.04 1.66 5.82 -2.38 -0.01 1.65 16 30 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 31 H 0.10 3.40 8.00 -2.38 -0.02 3.38 16 32 H 0.08 3.12 7.24 -2.39 -0.02 3.11 16 33 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 34 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 35 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 36 H 0.18 3.09 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -66.97 322.48 5.70 -61.27 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.09 Total: 8.97 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: 5.89 Total: 20.88 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -3.26 Total: -112.61 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.05 Total: -24.07 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -66.97 5.70 -61.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357907143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.622 kcal (2) G-P(sol) polarization free energy of solvation -66.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds