Wall clock time and date at job start Mon Mar 30 2020 01:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46490 * 120.00066 * 2 1 4 4 C 1.50697 * 109.47314 * 269.99546 * 3 2 1 5 5 N 1.30112 * 124.94910 * 90.02244 * 4 3 2 6 6 C 1.35785 * 109.64631 * 179.97438 * 5 4 3 7 7 C 1.39735 * 133.60204 * 179.97438 * 6 5 4 8 8 C 1.36605 * 119.88505 * 180.02562 * 7 6 5 9 9 C 1.38772 * 120.67413 * 359.97438 * 8 7 6 10 10 C 1.37857 * 120.44773 * 359.97248 * 9 8 7 11 11 C 1.38836 * 119.69151 * 0.06034 * 10 9 8 12 12 N 1.36038 * 124.95275 * 270.00607 * 4 3 2 13 13 C 1.46497 * 126.35114 * 0.02562 * 12 4 3 14 14 C 1.34779 * 119.99902 * 179.97438 * 2 1 3 15 15 O 1.21684 * 120.00234 * 180.02562 * 14 2 1 16 16 C 1.46374 * 119.99913 * 0.02562 * 14 2 1 17 17 H 1.08006 * 120.00136 * 0.02562 * 16 14 2 18 18 C 1.40056 * 119.99922 * 180.02562 * 16 14 2 19 19 N 1.30664 * 119.99917 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 119.99738 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47074 * 90.00030 * 20 18 16 22 22 H 1.48495 * 109.46879 * 210.00123 * 20 18 16 23 23 H 1.48492 * 109.47111 * 329.99977 * 20 18 16 24 24 H 1.09006 * 109.47248 * 90.00352 * 1 2 3 25 25 H 1.09001 * 109.47747 * 209.99861 * 1 2 3 26 26 H 1.08998 * 109.47117 * 330.00160 * 1 2 3 27 27 H 1.09005 * 109.47261 * 150.00086 * 3 2 1 28 28 H 1.08995 * 109.47762 * 30.00151 * 3 2 1 29 29 H 1.08000 * 120.05646 * 359.97438 * 7 6 5 30 30 H 1.07999 * 119.66329 * 179.72373 * 8 7 6 31 31 H 1.07998 * 119.77865 * 180.02562 * 9 8 7 32 32 H 1.07997 * 120.15633 * 180.02562 * 10 9 8 33 33 H 1.09006 * 109.46837 * 89.99930 * 13 12 4 34 34 H 1.09000 * 109.47673 * 210.00486 * 13 12 4 35 35 H 1.09007 * 109.47163 * 330.00891 * 13 12 4 36 36 H 0.97006 * 119.99852 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2686 0.0000 4 6 2.4487 1.7036 -1.4208 5 7 1.6496 2.4524 -2.1234 6 6 2.1785 2.6516 -3.3580 7 6 1.7531 3.3579 -4.4862 8 6 2.5262 3.3714 -5.6124 9 6 3.7344 2.6897 -5.6499 10 6 4.1746 1.9871 -4.5485 11 6 3.4020 1.9615 -3.3952 12 7 3.5442 1.3710 -2.1555 13 6 4.6673 0.5411 -1.7129 14 6 2.1388 -1.1672 0.0005 15 8 3.3557 -1.1673 0.0010 16 6 1.4069 -2.4349 0.0005 17 1 0.3268 -2.4348 -0.0003 18 6 2.1072 -3.6478 0.0016 19 7 3.4138 -3.6478 0.0031 20 14 1.1730 -5.2655 0.0023 21 1 0.9261 -5.6951 -1.3976 22 1 1.9752 -6.2999 0.7034 23 1 -0.1247 -5.0874 0.7017 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 3.1499 1.1383 0.5138 28 1 1.6085 2.0283 0.5138 29 1 0.8144 3.8916 -4.4681 30 1 2.1918 3.9147 -6.4837 31 1 4.3342 2.7104 -6.5477 32 1 5.1158 1.4586 -4.5827 33 1 4.4611 -0.5036 -1.9461 34 1 5.5760 0.8555 -2.2262 35 1 4.8004 0.6536 -0.6368 36 1 3.8988 -4.4879 0.0043 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358728391.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:09 Heat of formation + Delta-G solvation = 23.152172 kcal Electronic energy + Delta-G solvation = -20944.236998 eV Core-core repulsion = 17814.538318 eV Total energy + Delta-G solvation = -3129.698680 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.11477 -39.71194 -38.22003 -35.88262 -35.12720 -34.56367 -31.69616 -31.21002 -29.02950 -27.96765 -27.68540 -26.34342 -23.20595 -23.05466 -21.66303 -20.70440 -18.55847 -18.18929 -17.88791 -17.59166 -17.05142 -16.60172 -16.10068 -15.86650 -15.38178 -15.01052 -14.94289 -14.35119 -14.22646 -14.01900 -13.44159 -13.41634 -13.18400 -13.11383 -12.97624 -12.76148 -12.69517 -12.44302 -12.36719 -12.14684 -12.03064 -11.31718 -10.97038 -10.92690 -9.80970 -9.35785 -9.16020 -9.03018 -8.30083 -6.83876 -0.01016 0.60369 1.37827 1.38878 1.52849 1.64333 1.78176 2.23345 2.44166 2.85460 2.99330 3.17682 3.49734 3.69425 3.86599 4.07390 4.15726 4.20964 4.29189 4.47735 4.51718 4.56631 4.57127 4.70528 4.85314 4.86043 4.90675 5.01590 5.24550 5.36217 5.52276 5.57395 5.64860 5.67653 6.01059 6.08094 6.14843 6.30248 6.87942 6.90673 7.33208 8.43063 8.63714 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023716 B = 0.005276 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.364530 B = 5305.615581 C = 5572.419387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.641 5.641 3 C 0.201 3.799 4 C 0.264 3.736 5 N -0.516 5.516 6 C 0.010 3.990 7 C -0.082 4.082 8 C -0.122 4.122 9 C -0.099 4.099 10 C -0.123 4.123 11 C 0.015 3.985 12 N -0.483 5.483 13 C 0.106 3.894 14 C 0.541 3.459 15 O -0.603 6.603 16 C -0.569 4.569 17 H 0.084 0.916 18 C 0.038 3.962 19 N -0.811 5.811 20 Si 0.985 3.015 21 H -0.268 1.268 22 H -0.271 1.271 23 H -0.251 1.251 24 H 0.024 0.976 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.121 0.879 29 H 0.138 0.862 30 H 0.166 0.834 31 H 0.166 0.834 32 H 0.132 0.868 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.904 9.915 -7.458 12.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.378 5.378 3 C 0.075 3.925 4 C -0.003 4.003 5 N -0.237 5.237 6 C -0.109 4.109 7 C -0.102 4.102 8 C -0.142 4.142 9 C -0.118 4.118 10 C -0.144 4.144 11 C -0.095 4.095 12 N -0.171 5.171 13 C -0.036 4.036 14 C 0.347 3.653 15 O -0.488 6.488 16 C -0.605 4.605 17 H 0.102 0.898 18 C -0.179 4.179 19 N -0.440 5.440 20 Si 0.806 3.194 21 H -0.194 1.194 22 H -0.196 1.196 23 H -0.174 1.174 24 H 0.043 0.957 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.139 0.861 29 H 0.156 0.844 30 H 0.183 0.817 31 H 0.183 0.817 32 H 0.150 0.850 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.735 10.055 -7.095 12.329 hybrid contribution 0.507 -1.323 0.001 1.417 sum -0.228 8.733 -7.095 11.254 Atomic orbital electron populations 1.21517 0.79372 1.02834 0.99965 1.47921 1.07030 1.04143 1.78686 1.19655 0.99440 0.87620 0.85821 1.24688 0.83625 0.94328 0.97659 1.70334 1.29029 1.20281 1.04097 1.19673 0.93727 1.03033 0.94452 1.20299 1.00985 0.98552 0.90334 1.21049 0.94575 1.00550 0.98032 1.21312 0.96893 0.95936 0.97684 1.20333 1.00185 1.03224 0.90672 1.19492 1.00004 1.01337 0.88624 1.45390 1.19679 1.41104 1.10910 1.21847 0.86391 0.93512 1.01858 1.18551 0.87054 0.83514 0.76175 1.90498 1.14843 1.87044 1.56458 1.21486 0.94701 0.90036 1.54260 0.89752 1.26765 0.95505 1.04222 0.91364 1.70120 1.08969 1.28730 1.36194 0.85189 0.79128 0.76043 0.79080 1.19354 1.19605 1.17399 0.95745 0.91029 0.90044 0.89772 0.86102 0.84447 0.81700 0.81698 0.84980 0.93029 0.88445 0.89610 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.99 10.19 127.77 1.30 5.29 16 2 N -0.64 -28.85 2.86 -856.31 -2.45 -31.29 16 3 C 0.20 7.92 5.74 85.63 0.49 8.41 16 4 C 0.26 10.99 7.44 137.92 1.03 12.02 16 5 N -0.52 -21.35 11.27 -179.96 -2.03 -23.38 16 6 C 0.01 0.38 7.23 39.45 0.29 0.67 16 7 C -0.08 -2.40 10.05 22.25 0.22 -2.18 16 8 C -0.12 -2.71 9.96 22.02 0.22 -2.49 16 9 C -0.10 -2.21 10.03 22.31 0.22 -1.99 16 10 C -0.12 -3.60 10.05 22.32 0.22 -3.38 16 11 C 0.02 0.56 6.88 38.86 0.27 0.83 16 12 N -0.48 -19.59 3.21 -528.82 -1.70 -21.29 16 13 C 0.11 4.09 9.48 127.77 1.21 5.30 16 14 C 0.54 29.61 7.61 86.36 0.66 30.27 16 15 O -0.60 -35.51 11.27 -4.30 -0.05 -35.56 16 16 C -0.57 -31.20 8.74 24.83 0.22 -30.98 16 17 H 0.08 4.26 6.00 -2.91 -0.02 4.25 16 18 C 0.04 2.02 5.50 85.31 0.47 2.49 16 19 N -0.81 -46.84 11.83 21.84 0.26 -46.59 16 20 Si 0.99 40.20 29.56 68.60 2.03 42.23 16 21 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 22 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 23 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 24 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.07 2.70 6.09 -2.39 -0.01 2.68 16 26 H 0.08 2.46 7.89 -2.39 -0.02 2.44 16 27 H 0.08 3.42 6.29 -2.38 -0.01 3.41 16 28 H 0.12 3.94 7.89 -2.39 -0.02 3.92 16 29 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 30 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 32 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 33 H 0.05 2.41 7.19 -2.38 -0.02 2.39 16 34 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.09 3.42 6.33 -2.38 -0.02 3.41 16 36 H 0.27 14.42 8.29 -92.70 -0.77 13.65 16 Total: -1.00 -73.02 304.69 3.99 -69.03 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 1.10 Total: 22.58 kcal Atomic # 6 Polarization: 17.45 SS G_CDS: 6.82 Total: 24.26 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -5.91 Total: -122.54 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.05 Total: -35.56 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -73.02 3.99 -69.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358728391.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.183 kcal (2) G-P(sol) polarization free energy of solvation -73.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds