Wall clock time and date at job start Mon Mar 30 2020 01:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47437 * 2 1 4 4 C 1.37102 * 120.00106 * 263.56201 * 3 2 1 5 5 H 1.07997 * 119.99747 * 188.38741 * 4 3 2 6 6 C 1.38953 * 119.99855 * 8.38162 * 4 3 2 7 7 N 1.31409 * 120.00021 * 25.17490 * 6 4 3 8 8 Si 1.86797 * 119.99882 * 205.16994 * 6 4 3 9 9 H 1.48502 * 109.46928 * 84.99305 * 8 6 4 10 10 H 1.48503 * 109.47087 * 204.98673 * 8 6 4 11 11 H 1.48498 * 109.47276 * 324.99246 * 8 6 4 12 12 C 1.34773 * 120.00069 * 83.55728 * 3 2 1 13 13 O 1.21294 * 120.00301 * 180.02562 * 12 3 2 14 14 C 1.50703 * 120.00156 * 0.02562 * 12 3 2 15 15 N 1.46495 * 109.47147 * 180.02562 * 14 12 3 16 16 C 1.33987 * 125.02121 * 125.00500 * 15 14 12 17 17 C 1.38244 * 107.91085 * 179.72786 * 16 15 14 18 18 C 1.41126 * 134.82232 * 179.97438 * 17 16 15 19 19 C 1.35657 * 119.53502 * 180.02562 * 18 17 16 20 20 C 1.39681 * 121.72886 * 0.02562 * 19 18 17 21 21 C 1.35638 * 121.81725 * 0.02562 * 20 19 18 22 22 C 1.41159 * 119.59233 * 359.97438 * 21 20 19 23 23 N 1.32059 * 134.67715 * 180.02562 * 22 21 20 24 24 H 1.09001 * 109.47378 * 299.99909 * 1 2 3 25 25 H 1.08996 * 109.47254 * 59.99881 * 1 2 3 26 26 H 1.08999 * 109.47451 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47378 * 240.00090 * 2 1 3 28 28 H 1.08996 * 109.47254 * 120.00119 * 2 1 3 29 29 H 0.96994 * 120.00123 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46817 * 59.99953 * 14 12 3 31 31 H 1.09001 * 109.47078 * 300.00591 * 14 12 3 32 32 H 1.08008 * 126.04711 * 359.75197 * 16 15 14 33 33 H 1.07998 * 120.22883 * 0.02875 * 18 17 16 34 34 H 1.07998 * 119.13506 * 179.97438 * 19 18 17 35 35 H 1.08000 * 119.09482 * 179.97438 * 20 19 18 36 36 H 1.07996 * 120.20327 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3724 1.9831 -1.1798 5 1 2.8579 2.9477 -1.1694 6 6 2.1067 1.3519 -2.3889 7 7 1.1282 0.4789 -2.4732 8 14 3.1404 1.7446 -3.8944 9 1 4.3645 0.9039 -3.8874 10 1 2.3537 1.4631 -5.1221 11 1 3.5247 3.1788 -3.8707 12 6 2.1195 2.0602 1.1598 13 8 2.5235 3.2039 1.1598 14 6 1.7308 1.3984 2.4568 15 7 1.9297 2.3379 3.5631 16 6 0.9895 2.6922 4.4494 17 6 1.5578 3.5862 5.3377 18 6 1.0954 4.2988 6.4646 19 6 1.9446 5.1207 7.1307 20 6 3.2730 5.2844 6.7313 21 6 3.7824 4.6312 5.6573 22 6 2.9567 3.7590 4.9157 23 7 3.1312 2.9944 3.8532 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 0.9424 0.0386 -3.3173 30 1 2.3500 0.5152 2.6138 31 1 0.6821 1.1041 2.4145 32 1 -0.0318 2.3411 4.4672 33 1 0.0727 4.1906 6.7943 34 1 1.5838 5.6633 7.9920 35 1 3.9119 5.9501 7.2926 36 1 4.8137 4.7769 5.3718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358884013.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:14 Heat of formation + Delta-G solvation = 84.377658 kcal Electronic energy + Delta-G solvation = -20458.972682 eV Core-core repulsion = 17331.928938 eV Total energy + Delta-G solvation = -3127.043744 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.97114 -38.71444 -36.94500 -35.17574 -32.58395 -31.87212 -31.34663 -29.59260 -28.50852 -27.64442 -24.90584 -22.89804 -22.23210 -21.66336 -20.34214 -19.23901 -17.11065 -16.76913 -16.64305 -16.28509 -15.60480 -14.98440 -14.42084 -14.12901 -14.10175 -13.72221 -13.61267 -12.95863 -12.84835 -12.74817 -12.33822 -11.89700 -11.67196 -11.50575 -11.24589 -11.21224 -11.10153 -10.91051 -10.41117 -10.28724 -10.03224 -9.99428 -9.86858 -9.03011 -8.73797 -8.17767 -7.90155 -7.33434 -6.48265 -3.89348 0.91440 2.09770 2.58728 2.80787 3.09256 3.21173 3.26256 3.66141 4.00789 4.13145 4.38004 4.71987 4.84718 4.93721 5.16747 5.23074 5.28077 5.38975 5.42498 5.61664 5.66726 5.77134 5.92096 5.96147 6.32389 6.34892 6.41960 6.56767 6.68194 6.77573 6.82460 7.06658 7.10027 7.18547 7.34247 7.60063 7.94100 8.03068 8.37313 9.05428 9.27482 9.80982 10.52449 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034020 B = 0.004278 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.857069 B = 6544.238417 C = 7128.220822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.114 3.886 3 N -0.435 5.435 4 C -0.306 4.306 5 H 0.105 0.895 6 C 0.033 3.967 7 N -0.865 5.865 8 Si 0.922 3.078 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.270 1.270 12 C 0.427 3.573 13 O -0.562 6.562 14 C 0.107 3.893 15 N -0.288 5.288 16 C 0.068 3.932 17 C -0.213 4.213 18 C -0.041 4.041 19 C -0.166 4.166 20 C -0.092 4.092 21 C -0.093 4.093 22 C 0.084 3.916 23 N -0.263 5.263 24 H 0.021 0.979 25 H 0.095 0.905 26 H 0.042 0.958 27 H 0.107 0.893 28 H 0.032 0.968 29 H 0.269 0.731 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.181 0.819 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.670 -0.796 13.097 13.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 N -0.154 5.154 4 C -0.433 4.433 5 H 0.123 0.877 6 C -0.171 4.171 7 N -0.505 5.505 8 Si 0.748 3.252 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.194 1.194 12 C 0.213 3.787 13 O -0.444 6.444 14 C -0.018 4.018 15 N -0.061 5.061 16 C -0.088 4.088 17 C -0.223 4.223 18 C -0.061 4.061 19 C -0.186 4.186 20 C -0.114 4.114 21 C -0.114 4.114 22 C -0.070 4.070 23 N -0.090 5.090 24 H 0.040 0.960 25 H 0.113 0.887 26 H 0.061 0.939 27 H 0.125 0.875 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.135 0.865 32 H 0.198 0.802 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.704 -0.888 11.836 11.991 hybrid contribution -0.394 0.131 -0.319 0.524 sum -2.098 -0.757 11.517 11.731 Atomic orbital electron populations 1.22148 0.96456 1.00151 1.02030 1.21555 0.94614 0.83638 1.01186 1.43781 1.55340 1.11125 1.05193 1.19737 1.36067 1.05736 0.81787 0.87681 1.25196 0.95888 0.97017 0.98976 1.70083 1.24784 1.28664 1.26934 0.86011 0.79889 0.79355 0.79942 1.20232 1.21027 1.19411 1.19561 0.87269 0.87486 0.84378 1.90629 1.50445 1.17620 1.85728 1.21937 1.03950 0.90557 0.85360 1.48221 1.07523 1.30380 1.19953 1.22578 0.95680 0.98941 0.91638 1.19521 0.95086 1.05853 1.01795 1.20154 0.98677 0.94681 0.92590 1.20390 0.94188 1.02237 1.01775 1.20521 0.95570 0.98947 0.96407 1.19864 0.98798 0.97225 0.95544 1.21030 0.94105 0.97903 0.93970 1.77930 1.02046 1.13271 1.15735 0.96046 0.88673 0.93925 0.87502 0.94987 0.92091 0.87618 0.86538 0.80176 0.86431 0.86645 0.86225 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.64 37.15 0.36 -2.44 16 2 C 0.11 2.32 5.07 -4.05 -0.02 2.30 16 3 N -0.43 -10.57 2.64 -114.82 -0.30 -10.88 16 4 C -0.31 -8.25 9.43 -14.93 -0.14 -8.39 16 5 H 0.11 3.07 7.31 -52.49 -0.38 2.69 16 6 C 0.03 0.81 4.90 -17.47 -0.09 0.73 16 7 N -0.87 -21.06 8.65 55.50 0.48 -20.58 16 8 Si 0.92 20.04 29.62 -169.99 -5.04 15.01 16 9 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 C 0.43 10.23 7.60 -10.99 -0.08 10.15 16 13 O -0.56 -16.02 15.27 5.55 0.08 -15.94 16 14 C 0.11 1.91 5.54 -5.20 -0.03 1.88 16 15 N -0.29 -5.45 3.35 -62.00 -0.21 -5.65 16 16 C 0.07 1.05 11.45 -16.61 -0.19 0.86 16 17 C -0.21 -3.48 6.33 -105.19 -0.67 -4.15 16 18 C -0.04 -0.54 10.09 -39.41 -0.40 -0.93 16 19 C -0.17 -2.03 9.90 -39.97 -0.40 -2.43 16 20 C -0.09 -1.18 9.89 -39.97 -0.40 -1.58 16 21 C -0.09 -1.47 10.08 -39.40 -0.40 -1.87 16 22 C 0.08 1.59 7.49 -83.05 -0.62 0.97 16 23 N -0.26 -5.69 11.56 33.26 0.38 -5.30 16 24 H 0.02 0.35 6.45 -51.93 -0.34 0.02 16 25 H 0.09 2.11 6.38 -51.93 -0.33 1.78 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.11 2.39 5.83 -51.93 -0.30 2.09 16 28 H 0.03 0.55 6.71 -51.93 -0.35 0.20 16 29 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 30 H 0.11 1.68 7.42 -51.93 -0.39 1.29 16 31 H 0.12 1.69 6.31 -51.93 -0.33 1.36 16 32 H 0.18 1.94 8.06 -52.48 -0.42 1.51 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 302.96 15.07 4.57 4.57 Total: -1.00 -32.75 302.96 -7.18 -39.93 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.09 Total: 3.74 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -3.07 Total: -4.90 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.35 Total: -42.41 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.08 Total: -15.94 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.04 Total: 15.01 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.75 -7.18 -39.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358884013.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.307 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds