Wall clock time and date at job start Mon Mar 30 2020 01:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47437 * 2 1 4 4 C 1.37102 * 120.00106 * 263.56201 * 3 2 1 5 5 H 1.07997 * 119.99747 * 188.38741 * 4 3 2 6 6 C 1.38953 * 119.99855 * 8.38162 * 4 3 2 7 7 N 1.31409 * 120.00021 * 25.17490 * 6 4 3 8 8 Si 1.86797 * 119.99882 * 205.16994 * 6 4 3 9 9 H 1.48502 * 109.46928 * 84.99305 * 8 6 4 10 10 H 1.48503 * 109.47087 * 204.98673 * 8 6 4 11 11 H 1.48498 * 109.47276 * 324.99246 * 8 6 4 12 12 C 1.34773 * 120.00069 * 83.55728 * 3 2 1 13 13 O 1.21294 * 120.00301 * 180.02562 * 12 3 2 14 14 C 1.50703 * 120.00156 * 0.02562 * 12 3 2 15 15 N 1.46495 * 109.47147 * 180.02562 * 14 12 3 16 16 C 1.33987 * 125.02121 * 125.00500 * 15 14 12 17 17 C 1.38244 * 107.91085 * 179.72786 * 16 15 14 18 18 C 1.41126 * 134.82232 * 179.97438 * 17 16 15 19 19 C 1.35657 * 119.53502 * 180.02562 * 18 17 16 20 20 C 1.39681 * 121.72886 * 0.02562 * 19 18 17 21 21 C 1.35638 * 121.81725 * 0.02562 * 20 19 18 22 22 C 1.41159 * 119.59233 * 359.97438 * 21 20 19 23 23 N 1.32059 * 134.67715 * 180.02562 * 22 21 20 24 24 H 1.09001 * 109.47378 * 299.99909 * 1 2 3 25 25 H 1.08996 * 109.47254 * 59.99881 * 1 2 3 26 26 H 1.08999 * 109.47451 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47378 * 240.00090 * 2 1 3 28 28 H 1.08996 * 109.47254 * 120.00119 * 2 1 3 29 29 H 0.96994 * 120.00123 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46817 * 59.99953 * 14 12 3 31 31 H 1.09001 * 109.47078 * 300.00591 * 14 12 3 32 32 H 1.08008 * 126.04711 * 359.75197 * 16 15 14 33 33 H 1.07998 * 120.22883 * 0.02875 * 18 17 16 34 34 H 1.07998 * 119.13506 * 179.97438 * 19 18 17 35 35 H 1.08000 * 119.09482 * 179.97438 * 20 19 18 36 36 H 1.07996 * 120.20327 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3724 1.9831 -1.1798 5 1 2.8579 2.9477 -1.1694 6 6 2.1067 1.3519 -2.3889 7 7 1.1282 0.4789 -2.4732 8 14 3.1404 1.7446 -3.8944 9 1 4.3645 0.9039 -3.8874 10 1 2.3537 1.4631 -5.1221 11 1 3.5247 3.1788 -3.8707 12 6 2.1195 2.0602 1.1598 13 8 2.5235 3.2039 1.1598 14 6 1.7308 1.3984 2.4568 15 7 1.9297 2.3379 3.5631 16 6 0.9895 2.6922 4.4494 17 6 1.5578 3.5862 5.3377 18 6 1.0954 4.2988 6.4646 19 6 1.9446 5.1207 7.1307 20 6 3.2730 5.2844 6.7313 21 6 3.7824 4.6312 5.6573 22 6 2.9567 3.7590 4.9157 23 7 3.1312 2.9944 3.8532 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 0.9424 0.0386 -3.3173 30 1 2.3500 0.5152 2.6138 31 1 0.6821 1.1041 2.4145 32 1 -0.0318 2.3411 4.4672 33 1 0.0727 4.1906 6.7943 34 1 1.5838 5.6633 7.9920 35 1 3.9119 5.9501 7.2926 36 1 4.8137 4.7769 5.3718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358884013.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:14 Heat of formation + Delta-G solvation = 63.486803 kcal Electronic energy + Delta-G solvation = -20459.878577 eV Core-core repulsion = 17331.928938 eV Total energy + Delta-G solvation = -3127.949639 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.21337 -40.45104 -38.10719 -37.02487 -34.17014 -33.44879 -32.57081 -31.24969 -29.68075 -29.02843 -26.67390 -24.29193 -23.74002 -22.81289 -21.53515 -20.88866 -18.88944 -18.28669 -18.00431 -17.63788 -16.79401 -16.60154 -16.07474 -15.78503 -15.62117 -14.89958 -14.81920 -14.61562 -14.29489 -13.95125 -13.90161 -13.57174 -13.13326 -12.87157 -12.74278 -12.61694 -12.43872 -12.31196 -12.18008 -12.09161 -11.67601 -11.22597 -11.06806 -10.88074 -10.48326 -9.77312 -9.50035 -8.50261 -8.40182 -5.89566 -0.19819 0.99559 1.31067 1.34443 1.40937 1.50377 1.61063 1.89993 2.23998 2.84766 3.01034 3.02275 3.35442 3.72317 3.84411 3.96716 4.06027 4.22341 4.30636 4.44760 4.48417 4.60829 4.72358 4.83905 4.85266 4.94482 5.13972 5.28188 5.38846 5.46356 5.63457 5.67546 5.75267 5.85404 5.93243 6.04216 6.17360 6.48173 6.78566 7.13513 7.40539 7.97020 8.57354 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034020 B = 0.004278 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.857069 B = 6544.238417 C = 7128.220822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.111 3.889 3 N -0.443 5.443 4 C -0.352 4.352 5 H 0.063 0.937 6 C 0.013 3.987 7 N -0.860 5.860 8 Si 0.976 3.024 9 H -0.270 1.270 10 H -0.268 1.268 11 H -0.285 1.285 12 C 0.413 3.587 13 O -0.623 6.623 14 C 0.120 3.880 15 N -0.308 5.308 16 C 0.082 3.918 17 C -0.235 4.235 18 C -0.038 4.038 19 C -0.171 4.171 20 C -0.068 4.068 21 C -0.142 4.142 22 C 0.061 3.939 23 N -0.339 5.339 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.276 0.724 30 H 0.126 0.874 31 H 0.158 0.842 32 H 0.232 0.768 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.864 -1.757 15.110 15.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.012 4.012 3 N -0.162 5.162 4 C -0.479 4.479 5 H 0.081 0.919 6 C -0.191 4.191 7 N -0.497 5.497 8 Si 0.800 3.200 9 H -0.195 1.195 10 H -0.193 1.193 11 H -0.211 1.211 12 C 0.201 3.799 13 O -0.509 6.509 14 C -0.004 4.004 15 N -0.081 5.081 16 C -0.074 4.074 17 C -0.245 4.245 18 C -0.058 4.058 19 C -0.190 4.190 20 C -0.090 4.090 21 C -0.163 4.163 22 C -0.093 4.093 23 N -0.166 5.166 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.144 0.856 31 H 0.175 0.825 32 H 0.249 0.751 33 H 0.174 0.826 34 H 0.173 0.827 35 H 0.171 0.829 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.922 -1.902 13.849 14.518 hybrid contribution 0.231 0.485 -0.865 1.018 sum -3.691 -1.417 12.984 13.572 Atomic orbital electron populations 1.21998 0.94827 1.01795 1.01225 1.21702 0.95933 0.81558 1.01959 1.43997 1.55064 1.12463 1.04691 1.19459 1.38801 1.05603 0.84065 0.91858 1.25734 0.96202 0.96751 1.00396 1.70148 1.23952 1.27827 1.27768 0.85232 0.78897 0.78218 0.77639 1.19507 1.19259 1.21060 1.20580 0.86048 0.87103 0.86158 1.90583 1.52853 1.20514 1.86999 1.21895 1.06427 0.90177 0.81871 1.48263 1.07761 1.31264 1.20854 1.23473 0.96855 0.97245 0.89799 1.20037 0.94101 1.06955 1.03363 1.20637 1.00626 0.93495 0.91040 1.20903 0.93540 1.01955 1.02636 1.21009 0.96538 0.96975 0.94461 1.20097 0.99090 0.99419 0.97675 1.21598 0.96259 0.97748 0.93654 1.77804 1.04440 1.16194 1.18195 0.93887 0.92422 0.90907 0.89782 0.91105 0.91361 0.85647 0.82460 0.75141 0.82629 0.82713 0.82854 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 9.64 71.98 0.69 -4.23 16 2 C 0.11 4.40 5.07 86.38 0.44 4.84 16 3 N -0.44 -22.09 2.64 -635.55 -1.68 -23.77 16 4 C -0.35 -19.90 9.43 84.04 0.79 -19.11 16 5 H 0.06 4.02 7.31 -2.91 -0.02 4.00 16 6 C 0.01 0.68 4.90 84.93 0.42 1.10 16 7 N -0.86 -41.62 8.65 21.66 0.19 -41.43 16 8 Si 0.98 41.78 29.62 68.60 2.03 43.81 16 9 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 10 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 11 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 12 C 0.41 20.40 7.60 87.66 0.67 21.06 16 13 O -0.62 -37.84 15.27 -3.07 -0.05 -37.89 16 14 C 0.12 4.18 5.54 85.63 0.47 4.66 16 15 N -0.31 -11.62 3.35 -350.06 -1.17 -12.79 16 16 C 0.08 2.38 11.45 84.37 0.97 3.34 16 17 C -0.23 -7.36 6.33 -20.23 -0.13 -7.49 16 18 C -0.04 -0.87 10.09 22.38 0.23 -0.64 16 19 C -0.17 -3.55 9.90 22.02 0.22 -3.33 16 20 C -0.07 -1.61 9.89 22.02 0.22 -1.39 16 21 C -0.14 -4.60 10.08 22.38 0.23 -4.37 16 22 C 0.06 2.38 7.49 42.16 0.32 2.70 16 23 N -0.34 -15.39 11.56 -48.70 -0.56 -15.95 16 24 H 0.04 1.29 6.45 -2.39 -0.02 1.28 16 25 H 0.06 2.49 6.38 -2.39 -0.02 2.47 16 26 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.08 3.72 5.83 -2.39 -0.01 3.70 16 28 H 0.07 2.24 6.71 -2.39 -0.02 2.22 16 29 H 0.28 12.49 8.31 -92.71 -0.77 11.72 16 30 H 0.13 3.78 7.42 -2.38 -0.02 3.76 16 31 H 0.16 4.02 6.31 -2.39 -0.02 4.01 16 32 H 0.23 3.88 8.06 -2.91 -0.02 3.86 16 33 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 34 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 35 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 36 H 0.12 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -79.41 302.96 5.38 -74.03 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 1.10 Total: 16.86 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 5.52 Total: -2.87 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -3.23 Total: -93.94 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -0.05 Total: -37.89 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -79.41 5.38 -74.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358884013.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.516 kcal (2) G-P(sol) polarization free energy of solvation -79.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds