Wall clock time and date at job start Mon Mar 30 2020 01:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47432 * 2 1 4 4 C 1.50703 * 109.46583 * 239.99843 * 2 1 3 5 5 H 1.07994 * 119.99990 * 245.45602 * 4 2 1 6 6 C 1.37876 * 119.99939 * 65.46802 * 4 2 1 7 7 N 1.31512 * 120.00164 * 9.55105 * 6 4 2 8 8 Si 1.86804 * 120.00049 * 189.55573 * 6 4 2 9 9 H 1.48503 * 109.46770 * 84.99177 * 8 6 4 10 10 H 1.48494 * 109.47083 * 204.99079 * 8 6 4 11 11 H 1.48502 * 109.47104 * 324.99183 * 8 6 4 12 12 N 1.46496 * 109.47245 * 120.00433 * 2 1 3 13 13 C 1.34778 * 119.99870 * 274.99644 * 12 2 1 14 14 O 1.21279 * 119.99927 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00190 * 179.97438 * 13 12 2 16 16 N 1.46497 * 109.47071 * 180.02562 * 15 13 12 17 17 C 1.33985 * 125.02276 * 125.00885 * 16 15 13 18 18 C 1.38250 * 107.90856 * 179.69680 * 17 16 15 19 19 C 1.41129 * 134.82146 * 180.25468 * 18 17 16 20 20 C 1.35651 * 119.53809 * 180.02562 * 19 18 17 21 21 C 1.39683 * 121.72799 * 0.02562 * 20 19 18 22 22 C 1.35640 * 121.81285 * 0.02562 * 21 20 19 23 23 C 1.41152 * 119.59967 * 359.95214 * 22 21 20 24 24 N 1.32062 * 134.68184 * 180.02562 * 23 22 21 25 25 H 1.09008 * 109.46760 * 303.68287 * 1 2 3 26 26 H 1.08999 * 109.47058 * 63.67637 * 1 2 3 27 27 H 1.08996 * 109.47553 * 183.67777 * 1 2 3 28 28 H 0.97008 * 120.00345 * 180.02562 * 7 6 4 29 29 H 0.96992 * 120.00512 * 94.99059 * 12 2 1 30 30 H 1.08998 * 109.46787 * 60.00286 * 15 13 12 31 31 H 1.08995 * 109.47061 * 300.00345 * 15 13 12 32 32 H 1.08000 * 126.04880 * 359.95146 * 17 16 15 33 33 H 1.08000 * 120.22482 * 0.02562 * 19 18 17 34 34 H 1.07994 * 119.13467 * 179.97438 * 20 19 18 35 35 H 1.07999 * 119.09261 * 180.02562 * 21 20 19 36 36 H 1.08000 * 120.20126 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.5785 -1.6371 -1.1339 6 6 1.7945 -0.1774 -2.4796 7 7 1.2993 1.0356 -2.5935 8 14 2.1758 -1.1781 -4.0102 9 1 1.0237 -2.0609 -4.3241 10 1 2.4225 -0.2614 -5.1522 11 1 3.3842 -2.0074 -3.7711 12 7 2.0184 -0.6907 1.1961 13 6 2.1472 -0.0184 2.3571 14 8 1.8583 1.1583 2.4117 15 6 2.6490 -0.7289 3.5876 16 7 2.6978 0.2123 4.7092 17 6 2.0942 0.0315 5.8916 18 6 2.3773 1.1274 6.6854 19 6 2.0445 1.5156 8.0008 20 6 2.5036 2.6961 8.4862 21 6 3.3018 3.5460 7.7169 22 6 3.6584 3.2355 6.4456 23 6 3.2175 2.0224 5.8743 24 7 3.3784 1.4353 4.7023 25 1 -0.3633 0.5700 0.8552 26 1 -0.3633 0.4557 -0.9211 27 1 -0.3634 -1.0255 0.0659 28 1 1.1317 1.4106 -3.4724 29 1 2.2489 -1.6318 1.1526 30 1 3.6481 -1.1214 3.3985 31 1 1.9761 -1.5507 3.8324 32 1 1.4960 -0.8216 6.1760 33 1 1.4285 0.8771 8.6167 34 1 2.2446 2.9869 9.4935 35 1 3.6444 4.4759 8.1461 36 1 4.2763 3.9122 5.8740 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360118097.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:33 Heat of formation + Delta-G solvation = 61.979112 kcal Electronic energy + Delta-G solvation = -19882.187190 eV Core-core repulsion = 16754.172173 eV Total energy + Delta-G solvation = -3128.015017 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.20902 -38.96905 -37.11359 -34.87766 -32.84363 -32.35788 -31.66401 -29.42769 -28.68125 -27.33692 -25.28466 -23.32848 -21.88393 -21.23632 -20.45780 -19.61628 -17.68058 -16.91904 -16.88202 -16.01789 -15.80518 -15.16717 -14.97291 -14.43834 -14.16018 -13.89728 -13.76107 -13.04714 -13.03313 -12.66731 -12.43038 -11.91364 -11.77526 -11.52351 -11.39700 -11.09979 -11.07248 -10.83593 -10.44121 -10.33947 -10.19709 -10.08939 -9.29497 -9.18672 -8.56751 -8.48706 -8.06589 -7.52434 -6.19606 -4.26136 0.71052 1.92301 2.29002 2.57362 3.12620 3.21583 3.28478 3.29777 3.78734 3.96206 4.26585 4.34686 4.59184 4.86932 5.00846 5.04644 5.13429 5.14257 5.24115 5.41132 5.49165 5.61416 5.74993 6.17703 6.52532 6.60648 6.64848 6.66884 6.79046 6.82457 6.99312 6.99779 7.29965 7.44202 7.59355 7.76313 7.79168 7.98689 8.50330 8.70917 8.95847 9.39799 10.88810 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.043752 B = 0.003380 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.812190 B = 8281.360735 C = 8475.291460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.265 3.735 3 H 0.056 0.944 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.879 5.879 8 Si 0.900 3.100 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.705 5.705 13 C 0.488 3.512 14 O -0.520 6.520 15 C 0.098 3.902 16 N -0.300 5.300 17 C 0.070 3.930 18 C -0.209 4.209 19 C -0.043 4.043 20 C -0.161 4.161 21 C -0.089 4.089 22 C -0.094 4.094 23 C 0.089 3.911 24 N -0.265 5.265 25 H 0.018 0.982 26 H 0.074 0.926 27 H 0.029 0.971 28 H 0.266 0.734 29 H 0.389 0.611 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.183 0.817 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.706 -4.213 18.941 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.163 3.837 3 H 0.074 0.926 4 C -0.578 4.578 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.516 5.516 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.354 5.354 13 C 0.270 3.730 14 O -0.396 6.396 15 C -0.027 4.027 16 N -0.073 5.073 17 C -0.086 4.086 18 C -0.219 4.219 19 C -0.063 4.063 20 C -0.181 4.181 21 C -0.112 4.112 22 C -0.115 4.115 23 C -0.066 4.066 24 N -0.091 5.091 25 H 0.037 0.963 26 H 0.093 0.907 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.222 0.778 30 H 0.137 0.863 31 H 0.143 0.857 32 H 0.200 0.800 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.983 -3.216 17.440 17.845 hybrid contribution -0.204 -1.159 -0.257 1.205 sum 1.779 -4.375 17.183 17.821 Atomic orbital electron populations 1.22018 0.98766 0.98590 1.00619 1.18789 0.90553 0.94640 0.79698 0.92576 1.21135 1.37533 1.08750 0.90341 0.91985 1.24900 0.94903 0.94620 0.99106 1.69986 1.43538 1.13699 1.24366 0.86498 0.78718 0.79912 0.82196 1.20387 1.21111 1.19868 1.46459 1.65300 1.13544 1.10144 1.20143 0.80196 0.88070 0.84628 1.90781 1.49307 1.15193 1.84313 1.21901 1.05403 0.90186 0.85249 1.48113 1.34409 1.14872 1.09940 1.22578 0.99455 1.00210 0.86311 1.19543 1.08415 0.96651 0.97302 1.20167 0.97782 0.96179 0.92206 1.20440 1.01896 0.95578 1.00201 1.20570 0.97608 0.99254 0.93717 1.19902 1.02218 0.94045 0.95309 1.21035 0.98036 0.96234 0.91258 1.77959 1.19617 0.93326 1.18172 0.96265 0.90748 0.95175 0.92445 0.77824 0.86345 0.85699 0.79975 0.86282 0.86455 0.86010 0.85652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.36 37.16 0.35 -3.04 16 2 C 0.26 6.60 2.42 -69.08 -0.17 6.43 16 3 H 0.06 1.67 7.52 -51.93 -0.39 1.28 16 4 C -0.54 -14.02 8.66 -34.44 -0.30 -14.32 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.84 5.17 -17.82 -0.09 1.75 16 7 N -0.88 -24.96 12.16 55.43 0.67 -24.29 16 8 Si 0.90 20.38 29.55 -169.99 -5.02 15.35 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 12 N -0.71 -13.77 5.07 -54.93 -0.28 -14.05 16 13 C 0.49 9.35 7.81 -10.99 -0.09 9.26 16 14 O -0.52 -12.81 15.32 5.56 0.09 -12.72 16 15 C 0.10 1.27 6.93 -5.20 -0.04 1.23 16 16 N -0.30 -4.63 3.36 -62.00 -0.21 -4.84 16 17 C 0.07 0.88 11.45 -16.61 -0.19 0.69 16 18 C -0.21 -2.96 6.33 -105.19 -0.67 -3.63 16 19 C -0.04 -0.49 10.09 -39.41 -0.40 -0.89 16 20 C -0.16 -1.73 9.90 -39.97 -0.40 -2.13 16 21 C -0.09 -1.02 9.89 -39.97 -0.40 -1.41 16 22 C -0.09 -1.33 10.08 -39.41 -0.40 -1.73 16 23 C 0.09 1.50 7.49 -83.05 -0.62 0.88 16 24 N -0.26 -5.04 11.53 33.26 0.38 -4.65 16 25 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 26 H 0.07 1.94 6.83 -51.93 -0.35 1.59 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.39 6.15 8.53 -40.82 -0.35 5.80 16 30 H 0.12 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.13 1.02 8.04 -51.93 -0.42 0.60 16 32 H 0.18 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 315.58 15.07 4.76 4.76 Total: -1.00 -35.34 315.58 -7.44 -42.78 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -4.43 Total: 4.56 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -3.40 Total: -6.90 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.57 Total: -47.83 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.34 -7.44 -42.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360118097.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.759 kcal (2) G-P(sol) polarization free energy of solvation -35.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds