Wall clock time and date at job start Mon Mar 30 2020 01:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47432 * 2 1 4 4 C 1.50703 * 109.46583 * 239.99843 * 2 1 3 5 5 H 1.07994 * 119.99990 * 245.45602 * 4 2 1 6 6 C 1.37876 * 119.99939 * 65.46802 * 4 2 1 7 7 N 1.31512 * 120.00164 * 9.55105 * 6 4 2 8 8 Si 1.86804 * 120.00049 * 189.55573 * 6 4 2 9 9 H 1.48503 * 109.46770 * 84.99177 * 8 6 4 10 10 H 1.48494 * 109.47083 * 204.99079 * 8 6 4 11 11 H 1.48502 * 109.47104 * 324.99183 * 8 6 4 12 12 N 1.46496 * 109.47245 * 120.00433 * 2 1 3 13 13 C 1.34778 * 119.99870 * 274.99644 * 12 2 1 14 14 O 1.21279 * 119.99927 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00190 * 179.97438 * 13 12 2 16 16 N 1.46497 * 109.47071 * 180.02562 * 15 13 12 17 17 C 1.33985 * 125.02276 * 125.00885 * 16 15 13 18 18 C 1.38250 * 107.90856 * 179.69680 * 17 16 15 19 19 C 1.41129 * 134.82146 * 180.25468 * 18 17 16 20 20 C 1.35651 * 119.53809 * 180.02562 * 19 18 17 21 21 C 1.39683 * 121.72799 * 0.02562 * 20 19 18 22 22 C 1.35640 * 121.81285 * 0.02562 * 21 20 19 23 23 C 1.41152 * 119.59967 * 359.95214 * 22 21 20 24 24 N 1.32062 * 134.68184 * 180.02562 * 23 22 21 25 25 H 1.09008 * 109.46760 * 303.68287 * 1 2 3 26 26 H 1.08999 * 109.47058 * 63.67637 * 1 2 3 27 27 H 1.08996 * 109.47553 * 183.67777 * 1 2 3 28 28 H 0.97008 * 120.00345 * 180.02562 * 7 6 4 29 29 H 0.96992 * 120.00512 * 94.99059 * 12 2 1 30 30 H 1.08998 * 109.46787 * 60.00286 * 15 13 12 31 31 H 1.08995 * 109.47061 * 300.00345 * 15 13 12 32 32 H 1.08000 * 126.04880 * 359.95146 * 17 16 15 33 33 H 1.08000 * 120.22482 * 0.02562 * 19 18 17 34 34 H 1.07994 * 119.13467 * 179.97438 * 20 19 18 35 35 H 1.07999 * 119.09261 * 180.02562 * 21 20 19 36 36 H 1.08000 * 120.20126 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.5785 -1.6371 -1.1339 6 6 1.7945 -0.1774 -2.4796 7 7 1.2993 1.0356 -2.5935 8 14 2.1758 -1.1781 -4.0102 9 1 1.0237 -2.0609 -4.3241 10 1 2.4225 -0.2614 -5.1522 11 1 3.3842 -2.0074 -3.7711 12 7 2.0184 -0.6907 1.1961 13 6 2.1472 -0.0184 2.3571 14 8 1.8583 1.1583 2.4117 15 6 2.6490 -0.7289 3.5876 16 7 2.6978 0.2123 4.7092 17 6 2.0942 0.0315 5.8916 18 6 2.3773 1.1274 6.6854 19 6 2.0445 1.5156 8.0008 20 6 2.5036 2.6961 8.4862 21 6 3.3018 3.5460 7.7169 22 6 3.6584 3.2355 6.4456 23 6 3.2175 2.0224 5.8743 24 7 3.3784 1.4353 4.7023 25 1 -0.3633 0.5700 0.8552 26 1 -0.3633 0.4557 -0.9211 27 1 -0.3634 -1.0255 0.0659 28 1 1.1317 1.4106 -3.4724 29 1 2.2489 -1.6318 1.1526 30 1 3.6481 -1.1214 3.3985 31 1 1.9761 -1.5507 3.8324 32 1 1.4960 -0.8216 6.1760 33 1 1.4285 0.8771 8.6167 34 1 2.2446 2.9869 9.4935 35 1 3.6444 4.4759 8.1461 36 1 4.2763 3.9122 5.8740 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360118097.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:33 Heat of formation + Delta-G solvation = 36.542364 kcal Electronic energy + Delta-G solvation = -19883.290210 eV Core-core repulsion = 16754.172173 eV Total energy + Delta-G solvation = -3129.118038 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.24539 -40.51394 -38.10636 -36.72337 -34.43522 -33.77330 -32.67319 -31.16064 -29.67068 -28.52096 -27.33018 -24.51454 -22.91966 -22.79188 -21.49263 -21.25626 -19.22485 -18.06853 -17.96101 -17.60748 -17.06380 -16.67216 -16.28858 -15.99165 -15.50496 -14.91847 -14.87517 -14.60558 -14.38515 -13.98006 -13.92225 -13.57885 -13.01060 -12.95395 -12.72633 -12.71073 -12.46007 -12.37956 -12.32714 -12.16773 -11.26636 -11.19886 -11.10789 -10.81914 -10.60257 -9.84513 -9.53392 -8.51824 -8.23248 -6.37732 -0.22863 0.97470 1.30458 1.43843 1.44804 1.54673 1.57254 1.67587 2.31305 2.50831 3.00390 3.09313 3.30911 3.72583 3.86512 4.00896 4.12397 4.22928 4.29395 4.46944 4.59422 4.68151 4.71042 4.82534 4.91910 4.98981 5.25867 5.37021 5.54996 5.58205 5.61242 5.64678 5.74283 5.81741 5.92411 5.98751 6.14665 6.71214 6.74475 6.86990 7.29186 7.49430 8.86073 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.043752 B = 0.003380 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.812190 B = 8281.360735 C = 8475.291460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.271 3.729 3 H -0.007 1.007 4 C -0.548 4.548 5 H 0.080 0.920 6 C 0.013 3.987 7 N -0.922 5.922 8 Si 0.972 3.028 9 H -0.267 1.267 10 H -0.291 1.291 11 H -0.261 1.261 12 N -0.698 5.698 13 C 0.482 3.518 14 O -0.584 6.584 15 C 0.109 3.891 16 N -0.315 5.315 17 C 0.093 3.907 18 C -0.237 4.237 19 C -0.036 4.036 20 C -0.173 4.173 21 C -0.068 4.068 22 C -0.145 4.145 23 C 0.063 3.937 24 N -0.344 5.344 25 H 0.011 0.989 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.265 0.735 29 H 0.411 0.589 30 H 0.144 0.856 31 H 0.187 0.813 32 H 0.240 0.760 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.154 -7.443 21.253 22.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.167 3.833 3 H 0.011 0.989 4 C -0.586 4.586 5 H 0.098 0.902 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.797 3.203 9 H -0.193 1.193 10 H -0.217 1.217 11 H -0.185 1.185 12 N -0.348 5.348 13 C 0.267 3.733 14 O -0.463 6.463 15 C -0.015 4.015 16 N -0.089 5.089 17 C -0.062 4.062 18 C -0.247 4.247 19 C -0.056 4.056 20 C -0.193 4.193 21 C -0.090 4.090 22 C -0.166 4.166 23 C -0.090 4.090 24 N -0.171 5.171 25 H 0.030 0.970 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.248 0.752 30 H 0.162 0.838 31 H 0.204 0.796 32 H 0.257 0.743 33 H 0.175 0.825 34 H 0.171 0.829 35 H 0.168 0.832 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.456 -6.499 19.778 20.870 hybrid contribution -0.053 -0.106 -0.833 0.842 sum 1.403 -6.605 18.945 20.113 Atomic orbital electron populations 1.21819 0.98201 0.99643 0.98828 1.18320 0.90968 0.92024 0.82006 0.98860 1.21533 1.37222 1.09129 0.90690 0.90212 1.25871 0.94755 0.95447 1.02668 1.70156 1.45146 1.15697 1.24978 0.85355 0.79141 0.78202 0.77636 1.19257 1.21726 1.18480 1.46120 1.65208 1.14419 1.09095 1.21230 0.78545 0.87496 0.86024 1.90762 1.51753 1.18289 1.85505 1.22093 1.07882 0.89870 0.81622 1.48277 1.34867 1.14469 1.11267 1.23530 0.97292 1.00785 0.84614 1.20079 1.08961 0.96966 0.98652 1.20651 0.97084 0.96674 0.91206 1.20899 1.01409 0.95318 1.01639 1.21003 0.95593 1.00037 0.92343 1.20092 1.04972 0.94478 0.97067 1.21537 0.98616 0.97330 0.91537 1.77835 1.23094 0.95967 1.20168 0.96954 0.93497 0.92543 0.92619 0.75231 0.83848 0.79588 0.74343 0.82469 0.82929 0.83187 0.86601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.20 9.36 71.98 0.67 -5.52 16 2 C 0.27 13.89 2.42 44.25 0.11 14.00 16 3 H -0.01 -0.42 7.52 -2.39 -0.02 -0.44 16 4 C -0.55 -28.51 8.66 25.60 0.22 -28.29 16 5 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 6 C 0.01 0.69 5.17 84.65 0.44 1.13 16 7 N -0.92 -54.28 12.16 21.45 0.26 -54.02 16 8 Si 0.97 41.68 29.55 68.60 2.03 43.71 16 9 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 10 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 12 N -0.70 -26.94 5.07 -446.10 -2.26 -29.20 16 13 C 0.48 18.49 7.81 87.66 0.68 19.18 16 14 O -0.58 -30.25 15.32 -3.03 -0.05 -30.29 16 15 C 0.11 2.54 6.93 85.63 0.59 3.14 16 16 N -0.32 -9.37 3.36 -350.08 -1.18 -10.54 16 17 C 0.09 2.05 11.45 84.37 0.97 3.02 16 18 C -0.24 -6.32 6.33 -20.23 -0.13 -6.45 16 19 C -0.04 -0.71 10.09 22.38 0.23 -0.48 16 20 C -0.17 -3.21 9.90 22.02 0.22 -2.99 16 21 C -0.07 -1.48 9.89 22.02 0.22 -1.27 16 22 C -0.14 -4.37 10.08 22.38 0.23 -4.15 16 23 C 0.06 2.23 7.49 42.16 0.32 2.54 16 24 N -0.34 -13.71 11.53 -48.70 -0.56 -14.27 16 25 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 26 H 0.05 2.53 6.83 -2.39 -0.02 2.52 16 27 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 29 H 0.41 12.07 8.53 -92.71 -0.79 11.28 16 30 H 0.14 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.19 1.98 8.04 -2.39 -0.02 1.96 16 32 H 0.24 2.14 8.06 -2.91 -0.02 2.12 16 33 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 35 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.12 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -86.17 315.58 3.31 -82.86 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.31 Total: 17.90 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 4.76 Total: -6.15 kcal Atomic # 7 Polarization: -104.30 SS G_CDS: -3.74 Total: -108.04 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.05 Total: -30.29 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -86.17 3.31 -82.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360118097.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.406 kcal (2) G-P(sol) polarization free energy of solvation -86.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds