Wall clock time and date at job start Mon Mar 30 2020 02:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.40150 * 120.10973 * 335.60171 * 3 2 1 5 5 C 1.38253 * 117.97682 * 179.97438 * 4 3 2 6 6 C 1.39615 * 118.03614 * 359.97438 * 5 4 3 7 7 N 1.38646 * 120.04240 * 179.97438 * 6 5 4 8 8 C 1.46500 * 119.99640 * 0.02562 * 7 6 5 9 9 C 1.53043 * 109.44954 * 84.96610 * 8 7 6 10 10 C 1.53188 * 109.31421 * 181.38155 * 9 8 7 11 11 N 1.46926 * 108.77470 * 305.36395 * 10 9 8 12 12 C 1.36945 * 120.63247 * 233.58801 * 11 10 9 13 13 H 1.08003 * 119.99538 * 27.69046 * 12 11 10 14 14 C 1.38804 * 119.99927 * 207.69116 * 12 11 10 15 15 N 1.31618 * 120.00488 * 17.36142 * 14 12 11 16 16 Si 1.86806 * 119.99788 * 197.36620 * 14 12 11 17 17 H 1.48498 * 109.46827 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47161 * 120.00192 * 16 14 12 19 19 H 1.48493 * 109.47159 * 240.00031 * 16 14 12 20 20 C 1.46929 * 118.73924 * 53.60504 * 11 10 9 21 21 C 1.53037 * 109.46200 * 205.02313 * 8 7 6 22 22 N 1.32761 * 119.92661 * 0.25493 * 6 5 4 23 23 N 1.28354 * 122.18094 * 359.46552 * 22 6 5 24 24 H 1.08005 * 121.01097 * 0.02562 * 4 3 2 25 25 H 1.07998 * 120.98520 * 180.02562 * 5 4 3 26 26 H 0.96994 * 120.00627 * 179.97438 * 7 6 5 27 27 H 1.09004 * 109.46308 * 325.00055 * 8 7 6 28 28 H 1.09004 * 109.49690 * 301.32523 * 9 8 7 29 29 H 1.08999 * 109.49980 * 61.42592 * 9 8 7 30 30 H 1.09003 * 109.58923 * 185.57864 * 10 9 8 31 31 H 1.09001 * 109.59191 * 65.14633 * 10 9 8 32 32 H 0.97003 * 120.00197 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.58690 * 186.60588 * 20 11 10 34 34 H 1.09001 * 109.70191 * 66.25611 * 20 11 10 35 35 H 1.08997 * 109.50227 * 298.58369 * 21 8 7 36 36 H 1.09003 * 109.49367 * 58.67946 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2716 -1.1032 0.5008 5 6 4.6532 -1.0559 0.4791 6 6 5.2626 0.0876 -0.0407 7 7 6.6454 0.1794 -0.0821 8 6 7.4679 -0.9243 0.4193 9 6 7.6496 -1.9674 -0.6858 10 6 8.4810 -3.1361 -0.1478 11 7 9.7395 -2.6095 0.3976 12 6 10.9443 -3.1078 -0.0215 13 1 11.0390 -3.5303 -1.0110 14 6 12.0435 -3.0698 0.8252 15 7 11.8731 -2.8835 2.1170 16 14 13.7647 -3.2830 0.1314 17 1 13.6853 -3.4765 -1.3388 18 1 14.5718 -2.0725 0.4290 19 1 14.4053 -4.4700 0.7525 20 6 9.6810 -1.5383 1.4016 21 6 8.8361 -0.3876 0.8462 22 7 4.5165 1.0896 -0.4902 23 7 3.2337 1.0466 -0.4760 24 1 2.7504 -1.9648 0.8911 25 1 5.2436 -1.8796 0.8523 26 1 7.0682 0.9739 -0.4436 27 1 6.9751 -1.3847 1.2757 28 1 6.6735 -2.3323 -1.0057 29 1 8.1645 -1.5141 -1.5329 30 1 8.6970 -3.8339 -0.9569 31 1 7.9269 -3.6468 0.6398 32 1 12.6413 -2.8574 2.7088 33 1 10.6887 -1.1819 1.6149 34 1 9.2261 -1.9171 2.3169 35 1 9.3398 0.0508 -0.0152 36 1 8.7045 0.3720 1.6168 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396921299.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:28 Heat of formation + Delta-G solvation = 115.332110 kcal Electronic energy + Delta-G solvation = -20053.584308 eV Core-core repulsion = 16960.175601 eV Total energy + Delta-G solvation = -3093.408707 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.23667 -38.51911 -36.87308 -35.68191 -33.38808 -32.90847 -31.28855 -30.13858 -29.30724 -25.87795 -24.87128 -24.07783 -22.38765 -21.94857 -20.08312 -19.38774 -18.18042 -17.45210 -16.91498 -15.57662 -15.29685 -14.97670 -14.64709 -14.12027 -14.03262 -13.82158 -13.68494 -13.38338 -13.25705 -13.07727 -13.00352 -12.55794 -11.77906 -11.70219 -11.44934 -11.26972 -10.98994 -10.85355 -10.59588 -10.49859 -10.35583 -10.12486 -9.89877 -9.84142 -9.77628 -8.63263 -8.17559 -6.87354 -5.94563 -3.37075 0.47095 0.61586 2.29447 2.64828 2.79125 3.28393 3.37425 3.38019 3.38887 3.59766 4.24371 4.34893 4.37281 4.55934 4.68387 4.96040 5.15367 5.25421 5.31028 5.32355 5.46923 5.51148 5.70263 5.80454 6.00845 6.17740 6.18718 6.25979 6.37929 6.55489 6.72096 6.85101 7.11038 7.16487 7.34250 7.45170 7.66805 8.28701 8.49303 9.05075 9.67816 10.22520 11.14452 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.053225 B = 0.003350 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.940771 B = 8355.405641 C = 8491.823371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C 0.284 3.716 3 C 0.056 3.944 4 C -0.033 4.033 5 C -0.179 4.179 6 C 0.369 3.631 7 N -0.688 5.688 8 C 0.150 3.850 9 C -0.147 4.147 10 C 0.147 3.853 11 N -0.592 5.592 12 C -0.256 4.256 13 H 0.068 0.932 14 C 0.004 3.996 15 N -0.902 5.902 16 Si 0.902 3.098 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.290 1.290 20 C 0.173 3.827 21 C -0.147 4.147 22 N -0.304 5.304 23 N -0.151 5.151 24 H 0.157 0.843 25 H 0.161 0.839 26 H 0.410 0.590 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.020 0.980 32 H 0.255 0.745 33 H 0.095 0.905 34 H 0.023 0.977 35 H 0.064 0.936 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.859 3.172 -1.808 11.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.080 5.080 2 C -0.034 4.034 3 C -0.095 4.095 4 C -0.063 4.063 5 C -0.212 4.212 6 C 0.125 3.875 7 N -0.316 5.316 8 C 0.046 3.954 9 C -0.188 4.188 10 C 0.020 3.980 11 N -0.314 5.314 12 C -0.385 4.385 13 H 0.085 0.915 14 C -0.195 4.195 15 N -0.546 5.546 16 Si 0.732 3.268 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.216 1.216 20 C 0.047 3.953 21 C -0.187 4.187 22 N -0.160 5.160 23 N 0.002 4.998 24 H 0.174 0.826 25 H 0.178 0.822 26 H 0.247 0.753 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.113 0.887 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.283 4.467 -2.271 13.266 hybrid contribution 1.606 -1.182 0.220 2.006 sum -10.677 3.286 -2.051 11.358 Atomic orbital electron populations 1.81254 1.11368 1.07088 1.08259 1.24579 0.91186 0.93881 0.93771 1.17626 0.87440 0.95857 1.08601 1.22019 0.93729 0.97313 0.93202 1.21904 0.94851 0.99908 1.04531 1.20324 0.87728 0.90815 0.88594 1.45175 1.00495 1.21892 1.64004 1.21363 0.91502 0.86125 0.96418 1.22557 0.99949 0.97906 0.98377 1.20882 0.87810 0.92726 0.96622 1.44105 1.00792 1.38876 1.47668 1.19218 0.86243 1.36357 0.96727 0.91475 1.25045 0.98936 1.00693 0.94798 1.70015 1.29402 1.53513 1.01695 0.86228 0.84549 0.77438 0.78582 1.20204 1.21460 1.21642 1.20774 0.99444 0.85369 0.89730 1.22560 0.93930 1.00969 1.01233 1.73256 0.98086 1.23355 1.21297 1.73090 1.00990 1.19548 1.06170 0.82575 0.82194 0.75314 0.90105 0.92733 0.91497 0.92216 0.96176 0.93504 0.88722 0.95928 0.91679 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.22 18.54 41.84 0.78 -4.45 16 2 C 0.28 3.25 15.57 -22.47 -0.35 2.90 16 3 C 0.06 0.61 6.67 -84.80 -0.57 0.04 16 4 C -0.03 -0.28 9.91 -38.86 -0.38 -0.67 16 5 C -0.18 -1.71 8.90 -39.06 -0.35 -2.05 16 6 C 0.37 4.28 7.72 -154.88 -1.20 3.09 16 7 N -0.69 -7.87 5.23 -53.77 -0.28 -8.15 16 8 C 0.15 1.93 2.11 -67.89 -0.14 1.79 16 9 C -0.15 -2.06 5.60 -26.61 -0.15 -2.21 16 10 C 0.15 2.59 6.52 -3.71 -0.02 2.57 16 11 N -0.59 -13.06 3.00 -172.32 -0.52 -13.58 16 12 C -0.26 -6.45 9.59 -15.06 -0.14 -6.59 16 13 H 0.07 1.68 7.89 -52.48 -0.41 1.26 16 14 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 15 N -0.90 -24.34 11.19 55.49 0.62 -23.72 16 16 Si 0.90 20.41 29.59 -169.99 -5.03 15.38 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 20 C 0.17 3.56 5.31 -3.71 -0.02 3.54 16 21 C -0.15 -2.25 5.55 -26.62 -0.15 -2.40 16 22 N -0.30 -4.02 11.54 31.23 0.36 -3.66 16 23 N -0.15 -1.98 11.44 32.29 0.37 -1.61 16 24 H 0.16 0.81 8.06 -52.48 -0.42 0.39 16 25 H 0.16 1.33 6.25 -52.49 -0.33 1.00 16 26 H 0.41 4.45 8.73 -40.82 -0.36 4.09 16 27 H 0.08 1.00 6.48 -51.93 -0.34 0.67 16 28 H 0.05 0.66 7.73 -51.93 -0.40 0.26 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.09 2.25 6.04 -51.93 -0.31 1.94 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 308.29 15.07 4.65 4.65 Total: -1.00 -28.25 308.29 -6.84 -35.10 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.23 Total: 0.02 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -3.56 Total: 0.03 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 1.33 Total: -55.17 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.25 -6.84 -35.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396921299.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.428 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds