Wall clock time and date at job start Mon Mar 30 2020 02:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.40150 * 120.10973 * 335.60171 * 3 2 1 5 5 C 1.38253 * 117.97682 * 179.97438 * 4 3 2 6 6 C 1.39615 * 118.03614 * 359.97438 * 5 4 3 7 7 N 1.38646 * 120.04240 * 179.97438 * 6 5 4 8 8 C 1.46500 * 119.99640 * 0.02562 * 7 6 5 9 9 C 1.53043 * 109.44954 * 84.96610 * 8 7 6 10 10 C 1.53188 * 109.31421 * 181.38155 * 9 8 7 11 11 N 1.46926 * 108.77470 * 305.36395 * 10 9 8 12 12 C 1.36945 * 120.63247 * 233.58801 * 11 10 9 13 13 H 1.08003 * 119.99538 * 27.69046 * 12 11 10 14 14 C 1.38804 * 119.99927 * 207.69116 * 12 11 10 15 15 N 1.31618 * 120.00488 * 17.36142 * 14 12 11 16 16 Si 1.86806 * 119.99788 * 197.36620 * 14 12 11 17 17 H 1.48498 * 109.46827 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47161 * 120.00192 * 16 14 12 19 19 H 1.48493 * 109.47159 * 240.00031 * 16 14 12 20 20 C 1.46929 * 118.73924 * 53.60504 * 11 10 9 21 21 C 1.53037 * 109.46200 * 205.02313 * 8 7 6 22 22 N 1.32761 * 119.92661 * 0.25493 * 6 5 4 23 23 N 1.28354 * 122.18094 * 359.46552 * 22 6 5 24 24 H 1.08005 * 121.01097 * 0.02562 * 4 3 2 25 25 H 1.07998 * 120.98520 * 180.02562 * 5 4 3 26 26 H 0.96994 * 120.00627 * 179.97438 * 7 6 5 27 27 H 1.09004 * 109.46308 * 325.00055 * 8 7 6 28 28 H 1.09004 * 109.49690 * 301.32523 * 9 8 7 29 29 H 1.08999 * 109.49980 * 61.42592 * 9 8 7 30 30 H 1.09003 * 109.58923 * 185.57864 * 10 9 8 31 31 H 1.09001 * 109.59191 * 65.14633 * 10 9 8 32 32 H 0.97003 * 120.00197 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.58690 * 186.60588 * 20 11 10 34 34 H 1.09001 * 109.70191 * 66.25611 * 20 11 10 35 35 H 1.08997 * 109.50227 * 298.58369 * 21 8 7 36 36 H 1.09003 * 109.49367 * 58.67946 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2716 -1.1032 0.5008 5 6 4.6532 -1.0559 0.4791 6 6 5.2626 0.0876 -0.0407 7 7 6.6454 0.1794 -0.0821 8 6 7.4679 -0.9243 0.4193 9 6 7.6496 -1.9674 -0.6858 10 6 8.4810 -3.1361 -0.1478 11 7 9.7395 -2.6095 0.3976 12 6 10.9443 -3.1078 -0.0215 13 1 11.0390 -3.5303 -1.0110 14 6 12.0435 -3.0698 0.8252 15 7 11.8731 -2.8835 2.1170 16 14 13.7647 -3.2830 0.1314 17 1 13.6853 -3.4765 -1.3388 18 1 14.5718 -2.0725 0.4290 19 1 14.4053 -4.4700 0.7525 20 6 9.6810 -1.5383 1.4016 21 6 8.8361 -0.3876 0.8462 22 7 4.5165 1.0896 -0.4902 23 7 3.2337 1.0466 -0.4760 24 1 2.7504 -1.9648 0.8911 25 1 5.2436 -1.8796 0.8523 26 1 7.0682 0.9739 -0.4436 27 1 6.9751 -1.3847 1.2757 28 1 6.6735 -2.3323 -1.0057 29 1 8.1645 -1.5141 -1.5329 30 1 8.6970 -3.8339 -0.9569 31 1 7.9269 -3.6468 0.6398 32 1 12.6413 -2.8574 2.7088 33 1 10.6887 -1.1819 1.6149 34 1 9.2261 -1.9171 2.3169 35 1 9.3398 0.0508 -0.0152 36 1 8.7045 0.3720 1.6168 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396921299.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:27 Heat of formation + Delta-G solvation = 98.162451 kcal Electronic energy + Delta-G solvation = -20054.328840 eV Core-core repulsion = 16960.175601 eV Total energy + Delta-G solvation = -3094.153239 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.09861 -39.72868 -37.87010 -36.93453 -34.42632 -34.17163 -32.62333 -31.50456 -30.59983 -27.18389 -26.04253 -25.11227 -23.74070 -23.29763 -21.21010 -20.49246 -19.20151 -18.54625 -18.29821 -16.86308 -16.47024 -16.22149 -15.75515 -15.31822 -15.26358 -14.88440 -14.83724 -14.71594 -14.32990 -14.28250 -14.04032 -13.81191 -13.21468 -13.01226 -12.68964 -12.60141 -12.50189 -12.46018 -12.02388 -11.92646 -11.73855 -11.34092 -11.23422 -11.19162 -10.69198 -10.52304 -9.10765 -8.66978 -7.86831 -5.29670 -0.37900 -0.13531 1.38883 1.47309 1.51506 1.59757 1.76651 1.86130 2.50787 2.53155 2.74612 3.29955 3.48325 3.52699 3.71533 3.80830 3.85656 3.97297 4.03262 4.32679 4.49043 4.54358 4.70514 4.77215 4.86529 4.91731 5.00171 5.07429 5.11840 5.20762 5.39636 5.54258 5.68398 5.76427 5.90574 6.26999 6.42098 6.46421 7.18201 7.63079 7.89813 8.38078 9.19725 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.053225 B = 0.003350 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.940771 B = 8355.405641 C = 8491.823371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.302 3.698 3 C 0.058 3.942 4 C -0.015 4.015 5 C -0.175 4.175 6 C 0.362 3.638 7 N -0.686 5.686 8 C 0.165 3.835 9 C -0.133 4.133 10 C 0.142 3.858 11 N -0.611 5.611 12 C -0.258 4.258 13 H 0.065 0.935 14 C -0.047 4.047 15 N -0.932 5.932 16 Si 0.958 3.042 17 H -0.269 1.269 18 H -0.292 1.292 19 H -0.295 1.295 20 C 0.178 3.822 21 C -0.133 4.133 22 N -0.328 5.328 23 N -0.180 5.180 24 H 0.196 0.804 25 H 0.180 0.820 26 H 0.413 0.587 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.029 0.971 32 H 0.249 0.751 33 H 0.056 0.944 34 H 0.008 0.992 35 H 0.059 0.941 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.266 2.740 -2.210 12.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.015 4.015 3 C -0.094 4.094 4 C -0.044 4.044 5 C -0.208 4.208 6 C 0.119 3.881 7 N -0.314 5.314 8 C 0.060 3.940 9 C -0.174 4.174 10 C 0.017 3.983 11 N -0.335 5.335 12 C -0.389 4.389 13 H 0.083 0.917 14 C -0.243 4.243 15 N -0.578 5.578 16 Si 0.787 3.213 17 H -0.193 1.193 18 H -0.219 1.219 19 H -0.222 1.222 20 C 0.052 3.948 21 C -0.173 4.173 22 N -0.183 5.183 23 N -0.026 5.026 24 H 0.213 0.787 25 H 0.197 0.803 26 H 0.250 0.750 27 H 0.113 0.887 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.026 0.974 35 H 0.078 0.922 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.730 4.058 -2.706 14.570 hybrid contribution 1.953 -1.075 0.332 2.253 sum -11.777 2.984 -2.374 12.379 Atomic orbital electron populations 1.81280 1.12216 1.08079 1.09256 1.24590 0.91117 0.92957 0.92865 1.17754 0.87012 0.96298 1.08365 1.22382 0.93292 0.97345 0.91385 1.22150 0.95370 0.99520 1.03722 1.20431 0.87436 0.91392 0.88880 1.44860 1.00488 1.21555 1.64475 1.21043 0.90393 0.86067 0.96471 1.22370 1.00394 0.96596 0.98014 1.21042 0.86544 0.94215 0.96542 1.44363 1.01469 1.39708 1.47960 1.19494 0.87782 1.35094 0.96495 0.91740 1.25666 1.01838 1.01673 0.95095 1.70144 1.29658 1.55395 1.02589 0.85345 0.80968 0.76704 0.78248 1.19340 1.21862 1.22199 1.20555 0.98222 0.86584 0.89436 1.22272 0.94587 0.99128 1.01297 1.73180 0.98230 1.24438 1.22411 1.73022 1.01180 1.20886 1.07487 0.78720 0.80289 0.75034 0.88722 0.89814 0.92603 0.92751 0.95278 0.94134 0.92590 0.97373 0.92218 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -10.51 18.54 19.00 0.35 -10.16 16 2 C 0.30 6.29 15.57 88.33 1.38 7.66 16 3 C 0.06 1.10 6.67 40.71 0.27 1.37 16 4 C -0.02 -0.19 9.91 22.74 0.23 0.03 16 5 C -0.17 -2.61 8.90 22.61 0.20 -2.41 16 6 C 0.36 7.35 7.72 133.19 1.03 8.38 16 7 N -0.69 -13.82 5.23 -324.03 -1.69 -15.51 16 8 C 0.16 3.78 2.11 45.02 0.09 3.88 16 9 C -0.13 -3.35 5.60 30.67 0.17 -3.17 16 10 C 0.14 4.79 6.52 86.36 0.56 5.35 16 11 N -0.61 -26.83 3.00 -699.09 -2.09 -28.93 16 12 C -0.26 -13.07 9.59 84.03 0.81 -12.26 16 13 H 0.06 3.22 7.89 -2.91 -0.02 3.20 16 14 C -0.05 -2.46 4.91 84.86 0.42 -2.05 16 15 N -0.93 -51.52 11.19 21.65 0.24 -51.27 16 16 Si 0.96 42.54 29.59 68.60 2.03 44.57 16 17 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 20 C 0.18 7.35 5.31 86.36 0.46 7.80 16 21 C -0.13 -3.89 5.55 30.67 0.17 -3.72 16 22 N -0.33 -8.05 11.54 -55.12 -0.64 -8.69 16 23 N -0.18 -4.40 11.44 -51.75 -0.59 -4.99 16 24 H 0.20 0.96 8.06 -2.91 -0.02 0.94 16 25 H 0.18 2.04 6.25 -2.91 -0.02 2.02 16 26 H 0.41 8.08 8.73 -92.71 -0.81 7.27 16 27 H 0.09 1.98 6.48 -2.38 -0.02 1.97 16 28 H 0.08 1.66 7.73 -2.38 -0.02 1.64 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 1.86 7.93 -2.39 -0.02 1.84 16 31 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.25 13.46 8.31 -92.71 -0.77 12.69 16 33 H 0.06 2.74 6.04 -2.39 -0.01 2.73 16 34 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -62.50 308.29 3.70 -58.80 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 0.31 Total: 5.32 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 5.78 Total: 10.86 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -4.42 Total: -119.55 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -62.50 3.70 -58.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396921299.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.964 kcal (2) G-P(sol) polarization free energy of solvation -62.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds