Wall clock time and date at job start Mon Mar 30 2020 01:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99986 * 2 1 4 4 C 1.50705 * 109.47031 * 269.99435 * 3 2 1 5 5 C 1.38379 * 119.92632 * 269.97985 * 4 3 2 6 6 C 1.38342 * 120.30369 * 180.02562 * 5 4 3 7 7 C 1.37972 * 120.15304 * 359.67043 * 6 5 4 8 8 C 1.39616 * 119.84009 * 0.60500 * 7 6 5 9 9 C 1.43205 * 120.14614 * 179.69727 * 8 7 6 10 10 N 6.51295 * 77.51349 * 313.59795 * 2 1 3 11 11 C 1.37927 * 119.91836 * 90.00002 * 4 3 2 12 12 C 1.34780 * 120.00086 * 179.97438 * 2 1 3 13 13 O 1.21586 * 120.00194 * 180.02562 * 12 2 1 14 14 N 1.34777 * 119.99861 * 0.02562 * 12 2 1 15 15 C 1.46497 * 119.99840 * 179.97438 * 14 12 2 16 16 C 1.50700 * 109.47182 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99549 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00230 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99695 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00146 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47241 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47335 * 120.00030 * 20 18 16 23 23 H 1.48495 * 109.47152 * 240.00159 * 20 18 16 24 24 H 1.08998 * 109.46663 * 90.00336 * 1 2 3 25 25 H 1.09004 * 109.46955 * 210.00266 * 1 2 3 26 26 H 1.08999 * 109.46823 * 330.00706 * 1 2 3 27 27 H 1.09002 * 109.47230 * 149.99767 * 3 2 1 28 28 H 1.09000 * 109.47739 * 29.99614 * 3 2 1 29 29 H 1.08001 * 119.84560 * 0.02562 * 5 4 3 30 30 H 1.08002 * 119.92181 * 180.02562 * 6 5 4 31 31 H 1.07990 * 120.07788 * 180.30317 * 7 6 5 32 32 H 1.08003 * 120.08118 * 0.02562 * 11 4 3 33 33 H 0.96993 * 120.00055 * 359.97438 * 14 12 2 34 34 H 1.09005 * 109.47260 * 300.00279 * 15 14 12 35 35 H 1.09000 * 109.47357 * 60.00093 * 15 14 12 36 36 H 0.97009 * 119.99695 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4209 5 6 3.6027 1.3036 -2.0715 6 6 3.8415 1.6988 -3.3756 7 6 2.9260 2.4897 -4.0388 8 6 1.7625 2.9018 -3.3864 9 6 0.8109 3.7282 -4.0663 10 7 0.0569 4.3851 -4.6051 11 6 1.5282 2.4999 -2.0696 12 6 2.1390 -1.1672 0.0005 13 8 3.3548 -1.1672 0.0010 14 7 1.4651 -2.3344 0.0005 15 6 2.1976 -3.6031 0.0005 16 6 1.2183 -4.7486 -0.0001 17 1 0.1565 -4.5512 -0.0009 18 6 1.6779 -6.0485 -0.0008 19 7 2.9709 -6.2888 -0.0003 20 14 0.4641 -7.4683 -0.0023 21 1 -0.9218 -6.9348 -0.0032 22 1 0.6750 -8.2987 -1.2152 23 1 0.6739 -8.3002 1.2097 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8901 0.5137 27 1 3.1499 1.1384 0.5139 28 1 1.6085 2.0284 0.5138 29 1 4.3202 0.6800 -1.5588 30 1 4.7440 1.3826 -3.8776 31 1 3.1114 2.7934 -5.0584 32 1 0.6283 2.8121 -1.5604 33 1 0.4951 -2.3344 0.0005 34 1 2.8243 -3.6608 -0.8895 35 1 2.8242 -3.6609 0.8905 36 1 3.2943 -7.2034 -0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426421592.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:56 Heat of formation + Delta-G solvation = 27.850757 kcal Electronic energy + Delta-G solvation = -19786.849815 eV Core-core repulsion = 16657.354881 eV Total energy + Delta-G solvation = -3129.494934 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.07053 -39.07265 -36.67320 -35.31619 -34.24498 -32.58958 -31.65026 -31.40809 -27.63401 -27.11865 -25.30434 -23.94896 -22.64943 -21.81037 -19.46706 -18.48319 -17.92243 -16.41593 -16.07994 -15.93547 -15.56131 -15.41263 -14.68982 -14.33271 -14.18656 -13.60346 -13.50157 -13.27443 -13.16472 -13.00016 -12.88280 -12.51980 -12.26364 -12.03596 -11.80707 -11.72092 -11.49232 -11.24067 -10.93201 -10.91682 -10.30203 -9.50694 -9.36398 -9.12775 -8.96945 -8.74659 -8.49725 -7.77266 -6.16803 -4.23129 0.63874 1.09527 2.46011 2.74307 3.22141 3.23239 3.31067 3.34116 3.67092 3.77322 3.86264 4.30895 4.61016 4.62985 4.74284 4.92797 5.11763 5.17958 5.19619 5.19943 5.34592 5.49617 5.61990 5.69693 5.75227 5.84376 6.05267 6.23005 6.40749 6.65677 6.69540 7.07534 7.27598 7.49065 7.51064 7.55660 7.82247 8.00380 8.73977 8.87584 9.28781 9.45831 10.93427 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024561 B = 0.003622 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.734553 B = 7729.168007 C = 7836.353989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.639 5.639 3 C 0.174 3.826 4 C -0.104 4.104 5 C -0.057 4.057 6 C -0.123 4.123 7 C -0.070 4.070 8 C -0.042 4.042 9 C 0.261 3.739 10 N -0.428 5.428 11 C -0.058 4.058 12 C 0.696 3.304 13 O -0.597 6.597 14 N -0.728 5.728 15 C 0.266 3.734 16 C -0.541 4.541 17 H 0.062 0.938 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.903 3.097 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.141 0.859 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.387 0.613 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.119 16.963 -2.503 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.378 5.378 3 C 0.050 3.950 4 C -0.106 4.106 5 C -0.077 4.077 6 C -0.141 4.141 7 C -0.091 4.091 8 C -0.046 4.046 9 C -0.054 4.054 10 N -0.103 5.103 11 C -0.079 4.079 12 C 0.397 3.603 13 O -0.476 6.476 14 N -0.381 5.381 15 C 0.145 3.855 16 C -0.580 4.580 17 H 0.080 0.920 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.730 3.270 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.159 0.841 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.221 0.779 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.263 17.751 -3.313 18.199 hybrid contribution -0.882 -1.157 0.057 1.456 sum -3.146 16.594 -3.255 17.200 Atomic orbital electron populations 1.21686 0.80332 1.02783 1.01449 1.47089 1.05910 1.04694 1.80062 1.20141 0.98890 0.84594 0.91405 1.20347 0.94535 0.97509 0.98176 1.21624 0.96631 0.95145 0.94253 1.21167 0.99755 0.98194 0.95001 1.21170 0.92096 0.96201 0.99588 1.15938 0.93501 1.01019 0.94108 1.25773 0.93151 0.93138 0.93376 1.81242 1.09892 1.10435 1.08723 1.21031 0.98631 0.95948 0.92327 1.16079 0.85530 0.80427 0.78256 1.90836 1.11631 1.86201 1.58898 1.45875 1.09731 1.05689 1.76769 1.18984 0.91997 0.76901 0.97586 1.21255 0.92996 0.90732 1.53004 0.91990 1.24935 0.95392 0.98897 0.94759 1.69987 1.12530 1.20689 1.49040 0.86373 0.80945 0.81906 0.77747 1.19666 1.20810 1.20809 0.93123 0.91110 0.91367 0.88560 0.89909 0.84098 0.84858 0.85264 0.85285 0.77932 0.95737 0.95726 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.25 59.85 0.61 1.46 16 2 N -0.64 -8.89 2.86 -188.73 -0.54 -9.43 16 3 C 0.17 1.93 5.57 -5.19 -0.03 1.91 16 4 C -0.10 -1.12 5.46 -104.68 -0.57 -1.69 16 5 C -0.06 -0.66 9.69 -39.49 -0.38 -1.04 16 6 C -0.12 -1.19 10.03 -39.64 -0.40 -1.58 16 7 C -0.07 -0.63 9.76 -39.17 -0.38 -1.01 16 8 C -0.04 -0.41 5.73 -106.93 -0.61 -1.03 16 9 C 0.26 2.89 15.33 -22.47 -0.34 2.55 16 10 N -0.43 -5.63 18.54 41.83 0.78 -4.86 16 11 C -0.06 -0.55 9.41 -39.17 -0.37 -0.92 16 12 C 0.70 13.51 8.28 -86.91 -0.72 12.79 16 13 O -0.60 -13.54 15.43 5.29 0.08 -13.46 16 14 N -0.73 -15.14 5.41 -66.41 -0.36 -15.50 16 15 C 0.27 6.95 5.43 -5.20 -0.03 6.93 16 16 C -0.54 -14.49 9.28 -34.44 -0.32 -14.81 16 17 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.88 -25.73 13.29 55.43 0.74 -25.00 16 20 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.76 6.36 -51.93 -0.33 0.43 16 26 H 0.07 0.51 7.89 -51.93 -0.41 0.10 16 27 H 0.10 1.20 7.36 -51.93 -0.38 0.82 16 28 H 0.08 0.65 7.83 -51.93 -0.41 0.24 16 29 H 0.14 1.85 7.56 -52.49 -0.40 1.46 16 30 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.39 7.00 6.05 -40.82 -0.25 6.75 16 34 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 323.62 15.07 4.88 4.88 Total: -1.00 -32.73 323.62 -7.33 -40.06 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -4.24 Total: 2.52 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -3.64 Total: 5.19 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.61 Total: -54.78 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.08 Total: -13.46 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.73 -7.33 -40.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426421592.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.911 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds