Wall clock time and date at job start Mon Mar 30 2020 01:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99986 * 2 1 4 4 C 1.50705 * 109.47031 * 269.99435 * 3 2 1 5 5 C 1.38379 * 119.92632 * 269.97985 * 4 3 2 6 6 C 1.38342 * 120.30369 * 180.02562 * 5 4 3 7 7 C 1.37972 * 120.15304 * 359.67043 * 6 5 4 8 8 C 1.39616 * 119.84009 * 0.60500 * 7 6 5 9 9 C 1.43205 * 120.14614 * 179.69727 * 8 7 6 10 10 N 6.51295 * 77.51349 * 313.59795 * 2 1 3 11 11 C 1.37927 * 119.91836 * 90.00002 * 4 3 2 12 12 C 1.34780 * 120.00086 * 179.97438 * 2 1 3 13 13 O 1.21586 * 120.00194 * 180.02562 * 12 2 1 14 14 N 1.34777 * 119.99861 * 0.02562 * 12 2 1 15 15 C 1.46497 * 119.99840 * 179.97438 * 14 12 2 16 16 C 1.50700 * 109.47182 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99549 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00230 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99695 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00146 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47241 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47335 * 120.00030 * 20 18 16 23 23 H 1.48495 * 109.47152 * 240.00159 * 20 18 16 24 24 H 1.08998 * 109.46663 * 90.00336 * 1 2 3 25 25 H 1.09004 * 109.46955 * 210.00266 * 1 2 3 26 26 H 1.08999 * 109.46823 * 330.00706 * 1 2 3 27 27 H 1.09002 * 109.47230 * 149.99767 * 3 2 1 28 28 H 1.09000 * 109.47739 * 29.99614 * 3 2 1 29 29 H 1.08001 * 119.84560 * 0.02562 * 5 4 3 30 30 H 1.08002 * 119.92181 * 180.02562 * 6 5 4 31 31 H 1.07990 * 120.07788 * 180.30317 * 7 6 5 32 32 H 1.08003 * 120.08118 * 0.02562 * 11 4 3 33 33 H 0.96993 * 120.00055 * 359.97438 * 14 12 2 34 34 H 1.09005 * 109.47260 * 300.00279 * 15 14 12 35 35 H 1.09000 * 109.47357 * 60.00093 * 15 14 12 36 36 H 0.97009 * 119.99695 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4209 5 6 3.6027 1.3036 -2.0715 6 6 3.8415 1.6988 -3.3756 7 6 2.9260 2.4897 -4.0388 8 6 1.7625 2.9018 -3.3864 9 6 0.8109 3.7282 -4.0663 10 7 0.0569 4.3851 -4.6051 11 6 1.5282 2.4999 -2.0696 12 6 2.1390 -1.1672 0.0005 13 8 3.3548 -1.1672 0.0010 14 7 1.4651 -2.3344 0.0005 15 6 2.1976 -3.6031 0.0005 16 6 1.2183 -4.7486 -0.0001 17 1 0.1565 -4.5512 -0.0009 18 6 1.6779 -6.0485 -0.0008 19 7 2.9709 -6.2888 -0.0003 20 14 0.4641 -7.4683 -0.0023 21 1 -0.9218 -6.9348 -0.0032 22 1 0.6750 -8.2987 -1.2152 23 1 0.6739 -8.3002 1.2097 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8901 0.5137 27 1 3.1499 1.1384 0.5139 28 1 1.6085 2.0284 0.5138 29 1 4.3202 0.6800 -1.5588 30 1 4.7440 1.3826 -3.8776 31 1 3.1114 2.7934 -5.0584 32 1 0.6283 2.8121 -1.5604 33 1 0.4951 -2.3344 0.0005 34 1 2.8243 -3.6608 -0.8895 35 1 2.8242 -3.6609 0.8905 36 1 3.2943 -7.2034 -0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426421592.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:56 Heat of formation + Delta-G solvation = 7.193620 kcal Electronic energy + Delta-G solvation = -19787.745576 eV Core-core repulsion = 16657.354881 eV Total energy + Delta-G solvation = -3130.390695 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.22562 -40.19772 -37.63057 -36.56657 -36.06278 -34.38175 -32.75820 -32.22098 -29.33800 -28.19228 -26.56617 -24.83216 -24.37156 -22.81161 -21.00136 -19.58590 -19.15905 -17.95885 -17.36350 -17.21415 -16.69866 -16.49985 -16.36713 -15.32194 -15.19739 -14.88910 -14.83075 -14.66231 -14.15647 -14.03543 -13.92074 -13.81118 -13.60693 -13.32676 -13.13731 -12.85367 -12.73915 -12.65595 -12.37169 -12.17586 -12.01768 -11.41078 -11.09000 -10.78259 -9.97149 -9.91209 -9.82862 -9.36286 -8.26115 -6.41847 -0.18788 0.32158 1.45230 1.46178 1.59212 1.59393 1.79888 2.08692 2.31740 2.41134 2.82517 2.92924 3.09136 3.36574 3.81570 3.92570 4.13283 4.26705 4.35435 4.40713 4.57242 4.69006 4.80904 4.85393 4.96514 5.03469 5.11906 5.27987 5.32606 5.40715 5.49882 5.59361 5.67183 5.78407 5.86932 5.89923 6.16932 6.42432 6.70349 7.25789 7.28899 7.78802 8.86266 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024561 B = 0.003622 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.734553 B = 7729.168007 C = 7836.353989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.627 5.627 3 C 0.170 3.830 4 C -0.113 4.113 5 C -0.077 4.077 6 C -0.126 4.126 7 C -0.061 4.061 8 C -0.046 4.046 9 C 0.284 3.716 10 N -0.464 5.464 11 C -0.045 4.045 12 C 0.690 3.310 13 O -0.638 6.638 14 N -0.726 5.726 15 C 0.287 3.713 16 C -0.553 4.553 17 H 0.081 0.919 18 C 0.005 3.995 19 N -0.930 5.930 20 Si 0.983 3.017 21 H -0.254 1.254 22 H -0.280 1.280 23 H -0.279 1.279 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.128 0.872 29 H 0.114 0.886 30 H 0.148 0.852 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.402 0.598 34 H -0.015 1.015 35 H -0.015 1.015 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.737 17.974 -2.771 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.364 5.364 3 C 0.047 3.953 4 C -0.115 4.115 5 C -0.097 4.097 6 C -0.144 4.144 7 C -0.082 4.082 8 C -0.050 4.050 9 C -0.030 4.030 10 N -0.140 5.140 11 C -0.066 4.066 12 C 0.391 3.609 13 O -0.520 6.520 14 N -0.381 5.381 15 C 0.164 3.836 16 C -0.591 4.591 17 H 0.099 0.901 18 C -0.195 4.195 19 N -0.568 5.568 20 Si 0.806 3.194 21 H -0.177 1.177 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.128 0.872 27 H 0.093 0.907 28 H 0.146 0.854 29 H 0.132 0.868 30 H 0.166 0.834 31 H 0.170 0.830 32 H 0.174 0.826 33 H 0.238 0.762 34 H 0.003 0.997 35 H 0.003 0.997 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.939 18.839 -3.581 19.802 hybrid contribution 0.001 -1.369 0.131 1.375 sum -4.939 17.470 -3.450 18.480 Atomic orbital electron populations 1.21995 0.77596 1.04662 1.02675 1.47102 1.07570 1.03550 1.78158 1.20393 0.98690 0.84073 0.92131 1.20263 0.94756 0.98428 0.98014 1.21606 0.97001 0.95740 0.95331 1.21310 1.00606 0.98163 0.94297 1.21404 0.91305 0.95010 1.00447 1.15998 0.93501 1.01128 0.94371 1.25783 0.92448 0.92319 0.92480 1.81277 1.11115 1.11743 1.09896 1.21192 0.98824 0.94590 0.92014 1.16298 0.85151 0.81499 0.77912 1.90809 1.13742 1.87058 1.60433 1.45480 1.10211 1.04744 1.77704 1.18360 0.91701 0.79700 0.93855 1.21624 0.93822 0.91011 1.52656 0.90103 1.26019 0.97310 1.02170 0.93962 1.70145 1.15022 1.21573 1.50089 0.85139 0.78899 0.77697 0.77646 1.17712 1.20539 1.20466 0.92150 0.91564 0.87238 0.90657 0.85419 0.86820 0.83430 0.83037 0.82608 0.76158 0.99741 0.99668 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.28 10.25 127.77 1.31 2.59 16 2 N -0.63 -16.56 2.86 -869.29 -2.48 -19.05 16 3 C 0.17 3.51 5.57 85.64 0.48 3.98 16 4 C -0.11 -2.28 5.46 -19.90 -0.11 -2.39 16 5 C -0.08 -1.80 9.69 22.33 0.22 -1.59 16 6 C -0.13 -2.32 10.03 22.23 0.22 -2.09 16 7 C -0.06 -0.97 9.76 22.54 0.22 -0.75 16 8 C -0.05 -0.79 5.73 -21.36 -0.12 -0.91 16 9 C 0.28 5.60 15.33 88.33 1.35 6.95 16 10 N -0.46 -11.36 18.54 19.00 0.35 -11.00 16 11 C -0.05 -0.72 9.41 22.54 0.21 -0.50 16 12 C 0.69 27.34 8.28 179.05 1.48 28.82 16 13 O -0.64 -30.59 15.43 -3.99 -0.06 -30.65 16 14 N -0.73 -30.79 5.41 -482.29 -2.61 -33.40 16 15 C 0.29 15.71 5.43 85.63 0.46 16.17 16 16 C -0.55 -29.89 9.28 25.60 0.24 -29.65 16 17 H 0.08 3.96 7.60 -2.91 -0.02 3.94 16 18 C 0.01 0.27 5.46 84.65 0.46 0.74 16 19 N -0.93 -55.61 13.29 21.45 0.28 -55.33 16 20 Si 0.98 41.94 29.54 68.60 2.03 43.96 16 21 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 22 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 1.25 6.36 -2.39 -0.02 1.24 16 26 H 0.11 1.08 7.89 -2.39 -0.02 1.06 16 27 H 0.07 1.90 7.36 -2.39 -0.02 1.88 16 28 H 0.13 1.50 7.83 -2.39 -0.02 1.48 16 29 H 0.11 3.27 7.56 -2.91 -0.02 3.24 16 30 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 31 H 0.15 1.71 8.06 -2.92 -0.02 1.69 16 32 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.40 14.28 6.05 -92.71 -0.56 13.72 16 34 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 35 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 36 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 Total: -1.00 -74.63 323.62 4.48 -70.15 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.55 Total: 13.93 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: 6.43 Total: 21.38 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -4.46 Total: -118.78 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.06 Total: -30.65 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -74.63 4.48 -70.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426421592.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.344 kcal (2) G-P(sol) polarization free energy of solvation -74.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds