Wall clock time and date at job start Mon Mar 30 2020 01:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46650 * 2 1 4 4 C 1.50698 * 109.47043 * 120.00011 * 2 1 3 5 5 O 1.21284 * 120.00119 * 120.00286 * 4 2 1 6 6 N 1.34777 * 120.00001 * 299.99874 * 4 2 1 7 7 C 1.46498 * 119.99834 * 179.97438 * 6 4 2 8 8 C 1.50708 * 109.47162 * 180.02562 * 7 6 4 9 9 H 1.07994 * 119.99444 * 359.97438 * 8 7 6 10 10 C 1.37872 * 119.99837 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00312 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99565 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47578 * 59.99201 * 12 10 8 14 14 H 1.48502 * 109.46807 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46728 * 299.99495 * 12 10 8 16 16 N 1.46504 * 109.46999 * 239.99910 * 2 1 3 17 17 C 1.36031 * 126.34759 * 300.02152 * 16 2 1 18 18 N 1.30111 * 110.09613 * 179.74019 * 17 16 2 19 19 C 1.35786 * 109.64697 * 0.22644 * 18 17 16 20 20 C 1.39739 * 133.60953 * 179.97438 * 19 18 17 21 21 C 1.36601 * 119.88746 * 180.02562 * 20 19 18 22 22 C 1.38772 * 120.67248 * 0.02562 * 21 20 19 23 23 C 1.37858 * 120.45136 * 359.97438 * 22 21 20 24 24 C 1.38052 * 126.34487 * 120.14794 * 16 2 1 25 25 H 1.09008 * 109.47062 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47400 * 299.99966 * 1 2 3 27 27 H 1.08997 * 109.46970 * 60.00484 * 1 2 3 28 28 H 0.96996 * 120.00162 * 0.02562 * 6 4 2 29 29 H 1.09002 * 109.47713 * 300.00273 * 7 6 4 30 30 H 1.08999 * 109.47333 * 60.00696 * 7 6 4 31 31 H 0.97003 * 119.99773 * 180.02562 * 11 10 8 32 32 H 1.08002 * 124.95583 * 0.02562 * 17 16 2 33 33 H 1.07995 * 120.05265 * 359.97438 * 20 19 18 34 34 H 1.07997 * 119.66062 * 179.97438 * 21 20 19 35 35 H 1.08003 * 119.77977 * 179.97438 * 22 21 20 36 36 H 1.07997 * 120.15641 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 2.1946 -0.9409 3.6507 8 6 1.6919 -0.2307 4.8812 9 1 1.0715 0.6476 4.7821 10 6 2.0250 -0.7019 6.1334 11 7 2.7809 -1.7712 6.2541 12 14 1.4012 0.1780 7.6587 13 1 -0.0838 0.1772 7.6582 14 1 1.8958 -0.5224 8.8711 15 1 1.8953 1.5784 7.6591 16 7 2.0184 -0.6907 -1.1962 17 6 1.7703 -1.9836 -1.5384 18 7 2.3538 -2.2675 -2.6661 19 6 3.0210 -1.1763 -3.1223 20 6 3.7993 -0.9266 -4.2557 21 6 4.3541 0.3077 -4.4420 22 6 4.1539 1.3210 -3.5152 23 6 3.3898 1.0975 -2.3897 24 6 2.8176 -0.1506 -2.1838 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.1488 0.5385 2.5436 29 1 1.8309 -1.9684 3.6506 30 1 3.2846 -0.9413 3.6509 31 1 3.0149 -2.1029 7.1351 32 1 1.1720 -2.6727 -0.9608 33 1 3.9625 -1.7084 -4.9826 34 1 4.9553 0.4965 -5.3190 35 1 4.5997 2.2914 -3.6767 36 1 3.2374 1.8894 -1.6714 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427606852.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:07 Heat of formation + Delta-G solvation = 34.134364 kcal Electronic energy + Delta-G solvation = -20171.910607 eV Core-core repulsion = 17042.688150 eV Total energy + Delta-G solvation = -3129.222456 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.14369 -39.23711 -37.21861 -34.79074 -34.44630 -32.55430 -31.41394 -29.45821 -29.16258 -27.39068 -24.81612 -23.18385 -22.85881 -22.04710 -20.92117 -19.54753 -17.75567 -17.38475 -16.66081 -15.96834 -15.76195 -15.23809 -15.17012 -14.74155 -14.39354 -14.04309 -13.90024 -13.53025 -13.24453 -12.84780 -12.58867 -12.19494 -12.06525 -12.02280 -11.78248 -11.59038 -11.35527 -11.10500 -10.96153 -10.54051 -10.41601 -9.86163 -9.55094 -9.32749 -8.87285 -8.29481 -8.12775 -8.04685 -6.27092 -4.35625 1.01674 1.54614 2.51074 2.89293 2.97464 3.18096 3.23459 3.24776 3.73729 3.93543 4.24779 4.34046 4.57864 4.61500 4.67447 4.95846 5.02286 5.06632 5.09235 5.35441 5.36687 5.44367 5.48429 5.58530 5.74570 5.81633 6.14489 6.46248 6.50212 6.57279 6.89004 7.07995 7.13502 7.20958 7.34810 7.49797 7.82991 7.98360 8.34784 8.57633 8.81159 9.31215 10.82834 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.035101 B = 0.003644 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.497611 B = 7681.072723 C = 7789.994094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.119 0.881 4 C 0.486 3.514 5 O -0.537 6.537 6 N -0.701 5.701 7 C 0.250 3.750 8 C -0.548 4.548 9 H 0.063 0.937 10 C 0.065 3.935 11 N -0.884 5.884 12 Si 0.905 3.095 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.275 1.275 16 N -0.471 5.471 17 C 0.297 3.703 18 N -0.506 5.506 19 C 0.049 3.951 20 C -0.067 4.067 21 C -0.132 4.132 22 C -0.109 4.109 23 C -0.108 4.108 24 C 0.047 3.953 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.392 0.608 29 H 0.030 0.970 30 H 0.028 0.972 31 H 0.268 0.732 32 H 0.208 0.792 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.285 7.578 -16.568 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.010 3.990 3 H 0.137 0.863 4 C 0.268 3.732 5 O -0.414 6.414 6 N -0.350 5.350 7 C 0.130 3.870 8 C -0.586 4.586 9 H 0.082 0.918 10 C -0.139 4.139 11 N -0.520 5.520 12 Si 0.732 3.268 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.200 1.200 16 N -0.160 5.160 17 C 0.011 3.989 18 N -0.225 5.225 19 C -0.069 4.069 20 C -0.087 4.087 21 C -0.153 4.153 22 C -0.129 4.129 23 C -0.129 4.129 24 C -0.062 4.062 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.225 0.775 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.224 0.776 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.751 6.006 -16.764 18.018 hybrid contribution -0.492 1.518 1.635 2.285 sum -3.242 7.524 -15.129 17.205 Atomic orbital electron populations 1.22139 0.91071 1.04299 1.04073 1.21372 0.96729 0.97661 0.83282 0.86293 1.20364 0.82117 0.85780 0.84926 1.90751 1.38021 1.26303 1.86358 1.46443 1.51275 1.31150 1.06095 1.19185 0.95456 0.92932 0.79407 1.21138 1.33698 1.13374 0.90439 0.91845 1.24951 0.94711 0.94943 0.99291 1.69958 1.35292 1.22272 1.24524 0.86450 0.79166 0.79598 0.81570 1.19992 1.20990 1.20009 1.45094 1.41315 1.11614 1.17984 1.25175 0.97513 0.83725 0.92467 1.70512 1.14483 1.26569 1.10969 1.19094 1.01457 0.89884 0.96515 1.19982 0.96187 0.97247 0.95245 1.20583 1.01656 0.92964 1.00089 1.20812 0.98899 0.99358 0.93817 1.19957 1.00037 0.93723 0.99188 1.18904 0.98796 0.96822 0.91629 0.90931 0.89400 0.90856 0.77460 0.95227 0.95358 0.92226 0.77552 0.85607 0.85647 0.85526 0.86249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.14 37.16 0.34 -1.21 16 2 C 0.12 1.53 3.40 -69.08 -0.23 1.30 16 3 H 0.12 1.30 7.62 -51.93 -0.40 0.91 16 4 C 0.49 8.82 7.12 -10.99 -0.08 8.75 16 5 O -0.54 -12.25 15.48 5.55 0.09 -12.17 16 6 N -0.70 -13.26 5.44 -61.47 -0.33 -13.60 16 7 C 0.25 6.26 5.43 -5.19 -0.03 6.23 16 8 C -0.55 -14.11 9.28 -34.44 -0.32 -14.43 16 9 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 10 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.88 -25.30 13.29 55.43 0.74 -24.56 16 12 Si 0.91 20.09 29.54 -169.99 -5.02 15.07 16 13 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 16 N -0.47 -7.05 2.45 -109.93 -0.27 -7.32 16 17 C 0.30 4.66 10.71 -89.79 -0.96 3.70 16 18 N -0.51 -8.67 11.27 -12.05 -0.14 -8.80 16 19 C 0.05 0.78 7.23 -84.70 -0.61 0.17 16 20 C -0.07 -0.88 10.05 -39.61 -0.40 -1.28 16 21 C -0.13 -1.43 9.96 -39.98 -0.40 -1.83 16 22 C -0.11 -1.17 10.03 -39.52 -0.40 -1.57 16 23 C -0.11 -1.35 9.89 -39.50 -0.39 -1.74 16 24 C 0.05 0.72 6.87 -83.99 -0.58 0.14 16 25 H 0.07 0.73 7.95 -51.92 -0.41 0.32 16 26 H 0.09 0.75 7.56 -51.93 -0.39 0.35 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.39 6.09 7.74 -40.82 -0.32 5.78 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.21 2.79 8.06 -52.49 -0.42 2.37 16 33 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 36 H 0.12 1.24 7.76 -52.49 -0.41 0.83 16 LS Contribution 314.54 15.07 4.74 4.74 Total: -1.00 -33.37 314.54 -8.77 -42.14 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -4.42 Total: 4.63 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -4.15 Total: -0.12 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.00 Total: -54.29 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.37 -8.77 -42.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427606852.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.270 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds