Wall clock time and date at job start Mon Mar 30 2020 01:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46650 * 2 1 4 4 C 1.50698 * 109.47043 * 120.00011 * 2 1 3 5 5 O 1.21284 * 120.00119 * 120.00286 * 4 2 1 6 6 N 1.34777 * 120.00001 * 299.99874 * 4 2 1 7 7 C 1.46498 * 119.99834 * 179.97438 * 6 4 2 8 8 C 1.50708 * 109.47162 * 180.02562 * 7 6 4 9 9 H 1.07994 * 119.99444 * 359.97438 * 8 7 6 10 10 C 1.37872 * 119.99837 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00312 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99565 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47578 * 59.99201 * 12 10 8 14 14 H 1.48502 * 109.46807 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46728 * 299.99495 * 12 10 8 16 16 N 1.46504 * 109.46999 * 239.99910 * 2 1 3 17 17 C 1.36031 * 126.34759 * 300.02152 * 16 2 1 18 18 N 1.30111 * 110.09613 * 179.74019 * 17 16 2 19 19 C 1.35786 * 109.64697 * 0.22644 * 18 17 16 20 20 C 1.39739 * 133.60953 * 179.97438 * 19 18 17 21 21 C 1.36601 * 119.88746 * 180.02562 * 20 19 18 22 22 C 1.38772 * 120.67248 * 0.02562 * 21 20 19 23 23 C 1.37858 * 120.45136 * 359.97438 * 22 21 20 24 24 C 1.38052 * 126.34487 * 120.14794 * 16 2 1 25 25 H 1.09008 * 109.47062 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47400 * 299.99966 * 1 2 3 27 27 H 1.08997 * 109.46970 * 60.00484 * 1 2 3 28 28 H 0.96996 * 120.00162 * 0.02562 * 6 4 2 29 29 H 1.09002 * 109.47713 * 300.00273 * 7 6 4 30 30 H 1.08999 * 109.47333 * 60.00696 * 7 6 4 31 31 H 0.97003 * 119.99773 * 180.02562 * 11 10 8 32 32 H 1.08002 * 124.95583 * 0.02562 * 17 16 2 33 33 H 1.07995 * 120.05265 * 359.97438 * 20 19 18 34 34 H 1.07997 * 119.66062 * 179.97438 * 21 20 19 35 35 H 1.08003 * 119.77977 * 179.97438 * 22 21 20 36 36 H 1.07997 * 120.15641 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 2.1946 -0.9409 3.6507 8 6 1.6919 -0.2307 4.8812 9 1 1.0715 0.6476 4.7821 10 6 2.0250 -0.7019 6.1334 11 7 2.7809 -1.7712 6.2541 12 14 1.4012 0.1780 7.6587 13 1 -0.0838 0.1772 7.6582 14 1 1.8958 -0.5224 8.8711 15 1 1.8953 1.5784 7.6591 16 7 2.0184 -0.6907 -1.1962 17 6 1.7703 -1.9836 -1.5384 18 7 2.3538 -2.2675 -2.6661 19 6 3.0210 -1.1763 -3.1223 20 6 3.7993 -0.9266 -4.2557 21 6 4.3541 0.3077 -4.4420 22 6 4.1539 1.3210 -3.5152 23 6 3.3898 1.0975 -2.3897 24 6 2.8176 -0.1506 -2.1838 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.1488 0.5385 2.5436 29 1 1.8309 -1.9684 3.6506 30 1 3.2846 -0.9413 3.6509 31 1 3.0149 -2.1029 7.1351 32 1 1.1720 -2.6727 -0.9608 33 1 3.9625 -1.7084 -4.9826 34 1 4.9553 0.4965 -5.3190 35 1 4.5997 2.2914 -3.6767 36 1 3.2374 1.8894 -1.6714 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427606852.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:07 Heat of formation + Delta-G solvation = 12.194288 kcal Electronic energy + Delta-G solvation = -20172.862000 eV Core-core repulsion = 17042.688150 eV Total energy + Delta-G solvation = -3130.173849 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.22693 -40.73381 -38.20604 -36.28459 -35.93291 -34.42773 -32.47583 -30.49835 -30.19951 -29.18515 -26.05367 -24.60289 -24.18336 -23.05773 -22.32824 -20.92796 -19.19691 -18.43093 -18.05947 -17.53803 -16.92707 -16.68818 -16.45996 -16.26176 -15.79262 -15.19649 -14.95347 -14.69451 -14.56922 -14.24633 -14.05501 -13.56995 -13.41974 -12.97530 -12.95262 -12.85816 -12.69144 -12.58905 -12.28478 -12.24503 -11.67022 -11.54126 -10.98857 -10.82083 -10.81568 -9.96195 -9.31458 -9.07486 -8.30753 -6.47902 0.02521 0.56941 1.40299 1.44870 1.46863 1.49540 1.55628 1.82225 2.27054 2.45746 2.94207 3.04850 3.32385 3.48435 3.59311 3.72664 3.78395 4.07896 4.21259 4.46485 4.50628 4.52835 4.62917 4.70443 4.87340 5.04179 5.06680 5.18862 5.22336 5.39065 5.47866 5.58478 5.59544 5.61742 5.80344 5.99034 6.08458 6.61190 6.73099 6.86295 7.18396 7.32999 8.80964 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.035101 B = 0.003644 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.497611 B = 7681.072723 C = 7789.994094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.130 3.870 3 H 0.150 0.850 4 C 0.486 3.514 5 O -0.589 6.589 6 N -0.691 5.691 7 C 0.267 3.733 8 C -0.556 4.556 9 H 0.089 0.911 10 C 0.004 3.996 11 N -0.932 5.932 12 Si 0.984 3.016 13 H -0.260 1.260 14 H -0.289 1.289 15 H -0.261 1.261 16 N -0.474 5.474 17 C 0.279 3.721 18 N -0.536 5.536 19 C 0.010 3.990 20 C -0.086 4.086 21 C -0.123 4.123 22 C -0.099 4.099 23 C -0.120 4.120 24 C 0.028 3.972 25 H 0.064 0.936 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.413 0.587 29 H -0.009 1.009 30 H -0.014 1.014 31 H 0.268 0.732 32 H 0.215 0.785 33 H 0.133 0.867 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.122 11.108 -17.234 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.024 3.976 3 H 0.168 0.832 4 C 0.271 3.729 5 O -0.470 6.470 6 N -0.342 5.342 7 C 0.145 3.855 8 C -0.593 4.593 9 H 0.107 0.893 10 C -0.195 4.195 11 N -0.570 5.570 12 Si 0.807 3.193 13 H -0.185 1.185 14 H -0.215 1.215 15 H -0.186 1.186 16 N -0.163 5.163 17 C -0.006 4.006 18 N -0.256 5.256 19 C -0.108 4.108 20 C -0.106 4.106 21 C -0.142 4.142 22 C -0.118 4.118 23 C -0.141 4.141 24 C -0.081 4.081 25 H 0.084 0.916 26 H 0.125 0.875 27 H 0.114 0.886 28 H 0.250 0.750 29 H 0.009 0.991 30 H 0.004 0.996 31 H 0.077 0.923 32 H 0.231 0.769 33 H 0.151 0.849 34 H 0.179 0.821 35 H 0.182 0.818 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.622 9.589 -17.469 20.254 hybrid contribution -0.130 0.419 1.707 1.763 sum -3.752 10.008 -15.762 19.045 Atomic orbital electron populations 1.22183 0.88117 1.04572 1.06078 1.21446 0.98729 0.97630 0.79794 0.83210 1.21295 0.80619 0.85001 0.85983 1.90732 1.40211 1.28804 1.87228 1.46068 1.51605 1.31540 1.04947 1.18579 0.92861 0.91881 0.82199 1.21581 1.33431 1.13849 0.90482 0.89311 1.26055 0.94700 0.95567 1.03218 1.70133 1.37152 1.24407 1.25334 0.85222 0.79091 0.78477 0.76545 1.18454 1.21489 1.18580 1.45182 1.41449 1.11416 1.18272 1.25342 0.98093 0.84590 0.92606 1.70427 1.15405 1.27859 1.11887 1.19597 1.02882 0.90088 0.98210 1.20303 0.96546 0.98825 0.94919 1.21043 1.00433 0.91780 1.00991 1.21338 0.97232 1.00764 0.92511 1.20374 1.00059 0.93190 1.00477 1.19318 0.99352 0.97817 0.91578 0.91647 0.87457 0.88634 0.75024 0.99078 0.99635 0.92286 0.76893 0.84896 0.82141 0.81767 0.83996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.14 71.98 0.66 -1.96 16 2 C 0.13 3.22 3.40 44.25 0.15 3.37 16 3 H 0.15 2.79 7.62 -2.39 -0.02 2.78 16 4 C 0.49 17.79 7.12 87.66 0.62 18.42 16 5 O -0.59 -28.19 15.48 -3.04 -0.05 -28.24 16 6 N -0.69 -26.09 5.44 -466.78 -2.54 -28.63 16 7 C 0.27 13.88 5.43 85.64 0.46 14.34 16 8 C -0.56 -28.53 9.28 25.60 0.24 -28.29 16 9 H 0.09 4.00 7.60 -2.91 -0.02 3.98 16 10 C 0.00 0.24 5.46 84.65 0.46 0.70 16 11 N -0.93 -54.97 13.29 21.45 0.28 -54.69 16 12 Si 0.98 40.62 29.54 68.60 2.03 42.64 16 13 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 14 H -0.29 -12.06 7.11 99.48 0.71 -11.36 16 15 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 16 N -0.47 -14.08 2.45 -501.72 -1.23 -15.30 16 17 C 0.28 9.16 10.71 180.06 1.93 11.09 16 18 N -0.54 -19.17 11.27 -192.03 -2.16 -21.34 16 19 C 0.01 0.32 7.23 39.45 0.29 0.60 16 20 C -0.09 -2.21 10.05 22.25 0.22 -1.98 16 21 C -0.12 -2.29 9.96 22.01 0.22 -2.07 16 22 C -0.10 -1.76 10.03 22.31 0.22 -1.53 16 23 C -0.12 -2.68 9.89 22.32 0.22 -2.46 16 24 C 0.03 0.82 6.87 38.86 0.27 1.08 16 25 H 0.06 1.25 7.95 -2.38 -0.02 1.23 16 26 H 0.11 1.45 7.56 -2.39 -0.02 1.43 16 27 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.41 12.02 7.74 -92.71 -0.72 11.30 16 29 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 30 H -0.01 -0.86 8.14 -2.39 -0.02 -0.87 16 31 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.21 6.22 8.06 -2.91 -0.02 6.20 16 33 H 0.13 3.02 8.06 -2.91 -0.02 2.99 16 34 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.14 2.42 7.76 -2.91 -0.02 2.40 16 Total: -1.00 -77.37 314.54 2.68 -74.69 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.38 Total: 19.56 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 5.96 Total: 11.31 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -5.65 Total: -119.96 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.05 Total: -28.24 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.64 kcal Total: -77.37 2.68 -74.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427606852.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.889 kcal (2) G-P(sol) polarization free energy of solvation -77.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds