Wall clock time and date at job start Mon Mar 30 2020 01:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47068 * 2 1 4 4 C 1.50699 * 109.47055 * 240.00144 * 2 1 3 5 5 O 1.21283 * 120.00111 * 239.99808 * 4 2 1 6 6 N 1.34783 * 120.00049 * 59.99795 * 4 2 1 7 7 C 1.46498 * 119.99735 * 179.97438 * 6 4 2 8 8 C 1.50699 * 109.47147 * 180.02562 * 7 6 4 9 9 H 1.08003 * 120.00140 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00401 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99494 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00043 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47114 * 60.00059 * 12 10 8 14 14 H 1.48501 * 109.46928 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47321 * 299.99840 * 12 10 8 16 16 N 1.46495 * 109.47055 * 120.00223 * 2 1 3 17 17 C 1.36036 * 126.34949 * 59.99866 * 16 2 1 18 18 N 1.30117 * 110.09756 * 180.02562 * 17 16 2 19 19 C 1.35786 * 109.64357 * 359.97438 * 18 17 16 20 20 C 1.39734 * 133.59669 * 179.97438 * 19 18 17 21 21 C 1.36604 * 119.88478 * 180.02562 * 20 19 18 22 22 C 1.38782 * 120.66925 * 359.97438 * 21 20 19 23 23 C 1.37855 * 120.44765 * 0.24829 * 22 21 20 24 24 C 1.38055 * 126.34759 * 240.00041 * 16 2 1 25 25 H 1.08998 * 109.47068 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47101 * 300.00223 * 1 2 3 27 27 H 1.09004 * 109.46718 * 59.99851 * 1 2 3 28 28 H 0.96995 * 119.99609 * 0.02562 * 6 4 2 29 29 H 1.09007 * 109.47144 * 299.99739 * 7 6 4 30 30 H 1.08998 * 109.47169 * 60.00204 * 7 6 4 31 31 H 0.97004 * 119.99411 * 180.02562 * 11 10 8 32 32 H 1.07998 * 124.94999 * 359.96528 * 17 16 2 33 33 H 1.08000 * 120.05956 * 359.97438 * 20 19 18 34 34 H 1.08002 * 119.66719 * 179.97438 * 21 20 19 35 35 H 1.08000 * 119.77416 * 179.97438 * 22 21 20 36 36 H 1.08006 * 120.15007 * 179.67432 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7297 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 2.1955 -0.9402 -3.6508 8 6 1.6936 -0.2295 -4.8812 9 1 1.0723 0.6483 -4.7822 10 6 2.0267 -0.7005 -6.1336 11 7 2.7829 -1.7697 -6.2541 12 14 1.4039 0.1800 -7.6587 13 1 1.8988 1.5802 -7.6587 14 1 1.8995 -0.5197 -8.8712 15 1 -0.0810 0.1798 -7.6587 16 7 2.0184 -0.6906 1.1961 17 6 1.7706 -1.9838 1.5381 18 7 2.3582 -2.2691 2.6634 19 6 3.0241 -1.1775 3.1203 20 6 3.8044 -0.9287 4.2524 21 6 4.3564 0.3066 4.4407 22 6 4.1512 1.3218 3.5169 23 6 3.3813 1.1004 2.3951 24 6 2.8153 -0.1498 2.1852 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.1494 0.5389 -2.5435 29 1 3.2856 -0.9397 -3.6506 30 1 1.8326 -1.9680 -3.6509 31 1 3.0176 -2.1009 -7.1352 32 1 1.1725 -2.6728 0.9603 33 1 3.9702 -1.7114 4.9779 34 1 4.9585 0.4952 5.3172 35 1 4.5941 2.2932 3.6803 36 1 3.2204 1.8955 1.6819 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427606853.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:10 Heat of formation + Delta-G solvation = 34.126046 kcal Electronic energy + Delta-G solvation = -20171.826995 eV Core-core repulsion = 17042.604178 eV Total energy + Delta-G solvation = -3129.222817 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.14334 -39.23689 -37.21798 -34.79124 -34.44610 -32.55426 -31.41346 -29.45781 -29.16243 -27.39047 -24.81623 -23.18329 -22.85847 -22.04688 -20.92180 -19.54741 -17.75449 -17.38436 -16.66075 -15.96797 -15.76197 -15.23816 -15.16916 -14.74167 -14.39462 -14.04293 -13.89963 -13.52986 -13.24430 -12.84918 -12.58818 -12.19531 -12.06473 -12.02334 -11.78323 -11.58964 -11.35470 -11.10490 -10.96158 -10.53933 -10.41547 -9.86176 -9.55095 -9.32746 -8.87270 -8.29466 -8.12756 -8.04667 -6.27121 -4.35591 1.01687 1.54597 2.50969 2.89334 2.97540 3.18099 3.23457 3.24772 3.73704 3.93581 4.24792 4.34082 4.57898 4.61507 4.67433 4.95792 5.02283 5.06654 5.09230 5.35405 5.36710 5.44345 5.48428 5.58524 5.74593 5.81624 6.14481 6.46235 6.50202 6.57280 6.89016 7.08011 7.13539 7.20980 7.34833 7.49801 7.83021 7.98370 8.34802 8.57641 8.81187 9.31199 10.82831 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.035077 B = 0.003645 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.043963 B = 7680.746050 C = 7789.249189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.119 0.881 4 C 0.486 3.514 5 O -0.537 6.537 6 N -0.701 5.701 7 C 0.251 3.749 8 C -0.548 4.548 9 H 0.063 0.937 10 C 0.065 3.935 11 N -0.884 5.884 12 Si 0.905 3.095 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.274 1.274 16 N -0.471 5.471 17 C 0.297 3.703 18 N -0.506 5.506 19 C 0.049 3.951 20 C -0.067 4.067 21 C -0.133 4.133 22 C -0.109 4.109 23 C -0.108 4.108 24 C 0.047 3.953 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.392 0.608 29 H 0.028 0.972 30 H 0.030 0.970 31 H 0.268 0.732 32 H 0.208 0.792 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.302 7.578 16.575 18.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.010 3.990 3 H 0.137 0.863 4 C 0.268 3.732 5 O -0.414 6.414 6 N -0.350 5.350 7 C 0.130 3.870 8 C -0.587 4.587 9 H 0.082 0.918 10 C -0.139 4.139 11 N -0.520 5.520 12 Si 0.732 3.268 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.200 1.200 16 N -0.160 5.160 17 C 0.011 3.989 18 N -0.225 5.225 19 C -0.069 4.069 20 C -0.087 4.087 21 C -0.153 4.153 22 C -0.129 4.129 23 C -0.129 4.129 24 C -0.062 4.062 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.225 0.775 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.224 0.776 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.764 6.003 16.769 18.024 hybrid contribution -0.495 1.520 -1.633 2.285 sum -3.259 7.524 15.136 17.214 Atomic orbital electron populations 1.22140 0.91077 1.04297 1.04073 1.21371 0.96726 0.97662 0.83285 0.86292 1.20364 0.82112 0.85783 0.84924 1.90750 1.38018 1.26304 1.86356 1.46444 1.51285 1.31142 1.06094 1.19183 0.95448 0.92937 0.79406 1.21139 1.33688 1.13386 0.90440 0.91848 1.24953 0.94721 0.94937 0.99293 1.69959 1.35270 1.22288 1.24522 0.86449 0.79161 0.79600 0.81565 1.20013 1.20991 1.19988 1.45090 1.41421 1.11591 1.17907 1.25180 0.97493 0.83727 0.92486 1.70516 1.14392 1.26571 1.11048 1.19092 1.01449 0.89835 0.96571 1.19982 0.96188 0.97249 0.95241 1.20588 1.01674 0.92946 1.00087 1.20813 0.98833 0.99357 0.93881 1.19957 1.00029 0.93678 0.99244 1.18901 0.98858 0.96775 0.91616 0.90930 0.90851 0.89408 0.77462 0.95364 0.95222 0.92229 0.77553 0.85606 0.85648 0.85526 0.86250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.14 37.16 0.34 -1.21 16 2 C 0.12 1.53 3.40 -69.08 -0.23 1.30 16 3 H 0.12 1.30 7.62 -51.93 -0.40 0.91 16 4 C 0.49 8.83 7.12 -10.98 -0.08 8.75 16 5 O -0.54 -12.25 15.48 5.55 0.09 -12.17 16 6 N -0.70 -13.26 5.44 -61.47 -0.33 -13.60 16 7 C 0.25 6.26 5.43 -5.20 -0.03 6.24 16 8 C -0.55 -14.12 9.28 -34.44 -0.32 -14.44 16 9 H 0.06 1.50 7.60 -52.48 -0.40 1.10 16 10 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.88 -25.30 13.29 55.43 0.74 -24.56 16 12 Si 0.91 20.09 29.54 -169.99 -5.02 15.07 16 13 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 16 N -0.47 -7.05 2.45 -109.94 -0.27 -7.32 16 17 C 0.30 4.66 10.71 -89.78 -0.96 3.70 16 18 N -0.51 -8.67 11.27 -12.05 -0.14 -8.80 16 19 C 0.05 0.78 7.23 -84.70 -0.61 0.17 16 20 C -0.07 -0.88 10.05 -39.61 -0.40 -1.28 16 21 C -0.13 -1.43 9.96 -39.97 -0.40 -1.83 16 22 C -0.11 -1.17 10.03 -39.52 -0.40 -1.57 16 23 C -0.11 -1.35 9.89 -39.50 -0.39 -1.74 16 24 C 0.05 0.72 6.87 -83.99 -0.58 0.14 16 25 H 0.07 0.73 7.95 -51.93 -0.41 0.32 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 0.75 7.56 -51.93 -0.39 0.35 16 28 H 0.39 6.09 7.74 -40.82 -0.32 5.78 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.21 2.79 8.06 -52.49 -0.42 2.37 16 33 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.24 7.76 -52.48 -0.41 0.83 16 LS Contribution 314.55 15.07 4.74 4.74 Total: -1.00 -33.37 314.55 -8.77 -42.14 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -4.42 Total: 4.62 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -4.15 Total: -0.12 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.00 Total: -54.29 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.37 -8.77 -42.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427606853.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.268 kcal (2) G-P(sol) polarization free energy of solvation -33.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds