Wall clock time and date at job start Mon Mar 30 2020 01:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47068 * 2 1 4 4 C 1.50699 * 109.47055 * 240.00144 * 2 1 3 5 5 O 1.21283 * 120.00111 * 239.99808 * 4 2 1 6 6 N 1.34783 * 120.00049 * 59.99795 * 4 2 1 7 7 C 1.46498 * 119.99735 * 179.97438 * 6 4 2 8 8 C 1.50699 * 109.47147 * 180.02562 * 7 6 4 9 9 H 1.08003 * 120.00140 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00401 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99494 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00043 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47114 * 60.00059 * 12 10 8 14 14 H 1.48501 * 109.46928 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47321 * 299.99840 * 12 10 8 16 16 N 1.46495 * 109.47055 * 120.00223 * 2 1 3 17 17 C 1.36036 * 126.34949 * 59.99866 * 16 2 1 18 18 N 1.30117 * 110.09756 * 180.02562 * 17 16 2 19 19 C 1.35786 * 109.64357 * 359.97438 * 18 17 16 20 20 C 1.39734 * 133.59669 * 179.97438 * 19 18 17 21 21 C 1.36604 * 119.88478 * 180.02562 * 20 19 18 22 22 C 1.38782 * 120.66925 * 359.97438 * 21 20 19 23 23 C 1.37855 * 120.44765 * 0.24829 * 22 21 20 24 24 C 1.38055 * 126.34759 * 240.00041 * 16 2 1 25 25 H 1.08998 * 109.47068 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47101 * 300.00223 * 1 2 3 27 27 H 1.09004 * 109.46718 * 59.99851 * 1 2 3 28 28 H 0.96995 * 119.99609 * 0.02562 * 6 4 2 29 29 H 1.09007 * 109.47144 * 299.99739 * 7 6 4 30 30 H 1.08998 * 109.47169 * 60.00204 * 7 6 4 31 31 H 0.97004 * 119.99411 * 180.02562 * 11 10 8 32 32 H 1.07998 * 124.94999 * 359.96528 * 17 16 2 33 33 H 1.08000 * 120.05956 * 359.97438 * 20 19 18 34 34 H 1.08002 * 119.66719 * 179.97438 * 21 20 19 35 35 H 1.08000 * 119.77416 * 179.97438 * 22 21 20 36 36 H 1.08006 * 120.15007 * 179.67432 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7297 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 2.1955 -0.9402 -3.6508 8 6 1.6936 -0.2295 -4.8812 9 1 1.0723 0.6483 -4.7822 10 6 2.0267 -0.7005 -6.1336 11 7 2.7829 -1.7697 -6.2541 12 14 1.4039 0.1800 -7.6587 13 1 1.8988 1.5802 -7.6587 14 1 1.8995 -0.5197 -8.8712 15 1 -0.0810 0.1798 -7.6587 16 7 2.0184 -0.6906 1.1961 17 6 1.7706 -1.9838 1.5381 18 7 2.3582 -2.2691 2.6634 19 6 3.0241 -1.1775 3.1203 20 6 3.8044 -0.9287 4.2524 21 6 4.3564 0.3066 4.4407 22 6 4.1512 1.3218 3.5169 23 6 3.3813 1.1004 2.3951 24 6 2.8153 -0.1498 2.1852 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.1494 0.5389 -2.5435 29 1 3.2856 -0.9397 -3.6506 30 1 1.8326 -1.9680 -3.6509 31 1 3.0176 -2.1009 -7.1352 32 1 1.1725 -2.6728 0.9603 33 1 3.9702 -1.7114 4.9779 34 1 4.9585 0.4952 5.3172 35 1 4.5941 2.2932 3.6803 36 1 3.2204 1.8955 1.6819 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427606853.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:10 Heat of formation + Delta-G solvation = 12.176260 kcal Electronic energy + Delta-G solvation = -20172.778809 eV Core-core repulsion = 17042.604178 eV Total energy + Delta-G solvation = -3130.174631 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.22654 -40.73378 -38.20535 -36.28459 -35.93354 -34.42799 -32.47521 -30.49795 -30.19911 -29.18505 -26.05348 -24.60290 -24.18263 -23.05740 -22.32890 -20.92818 -19.19603 -18.43065 -18.05865 -17.53836 -16.92727 -16.68719 -16.45988 -16.26195 -15.79342 -15.19636 -14.95299 -14.69396 -14.56865 -14.24730 -14.05502 -13.57073 -13.41963 -12.97526 -12.95346 -12.85729 -12.69153 -12.58873 -12.28406 -12.24455 -11.66868 -11.54151 -10.98901 -10.82100 -10.81560 -9.96196 -9.31426 -9.07463 -8.30804 -6.47891 0.02562 0.56935 1.40213 1.44842 1.46876 1.49503 1.55624 1.82379 2.27037 2.45732 2.94243 3.04829 3.32440 3.48453 3.59336 3.72642 3.78435 4.07900 4.21291 4.46518 4.50648 4.52887 4.62884 4.70493 4.87356 5.04196 5.06656 5.18856 5.22352 5.39063 5.47874 5.58481 5.59552 5.61758 5.80355 5.99065 6.08487 6.61164 6.73100 6.86312 7.18376 7.32985 8.80942 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.035077 B = 0.003645 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.043963 B = 7680.746050 C = 7789.249189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.130 3.870 3 H 0.150 0.850 4 C 0.486 3.514 5 O -0.589 6.589 6 N -0.691 5.691 7 C 0.268 3.732 8 C -0.556 4.556 9 H 0.089 0.911 10 C 0.004 3.996 11 N -0.932 5.932 12 Si 0.984 3.016 13 H -0.261 1.261 14 H -0.289 1.289 15 H -0.260 1.260 16 N -0.474 5.474 17 C 0.279 3.721 18 N -0.536 5.536 19 C 0.010 3.990 20 C -0.086 4.086 21 C -0.123 4.123 22 C -0.099 4.099 23 C -0.120 4.120 24 C 0.028 3.972 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.413 0.587 29 H -0.014 1.014 30 H -0.009 1.009 31 H 0.268 0.732 32 H 0.215 0.785 33 H 0.133 0.867 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.144 11.113 17.241 20.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.024 3.976 3 H 0.168 0.832 4 C 0.271 3.729 5 O -0.470 6.470 6 N -0.342 5.342 7 C 0.145 3.855 8 C -0.594 4.594 9 H 0.107 0.893 10 C -0.195 4.195 11 N -0.570 5.570 12 Si 0.807 3.193 13 H -0.186 1.186 14 H -0.215 1.215 15 H -0.184 1.184 16 N -0.163 5.163 17 C -0.006 4.006 18 N -0.256 5.256 19 C -0.108 4.108 20 C -0.106 4.106 21 C -0.143 4.143 22 C -0.119 4.119 23 C -0.141 4.141 24 C -0.081 4.081 25 H 0.084 0.916 26 H 0.114 0.886 27 H 0.125 0.875 28 H 0.250 0.750 29 H 0.004 0.996 30 H 0.009 0.991 31 H 0.077 0.923 32 H 0.231 0.769 33 H 0.151 0.849 34 H 0.179 0.821 35 H 0.182 0.818 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.640 9.593 17.473 20.263 hybrid contribution -0.132 0.419 -1.704 1.760 sum -3.772 10.012 15.769 19.056 Atomic orbital electron populations 1.22184 0.88119 1.04572 1.06081 1.21445 0.98728 0.97629 0.79795 0.83207 1.21295 0.80614 0.85003 0.85983 1.90731 1.40209 1.28805 1.87227 1.46069 1.51612 1.31535 1.04946 1.18577 0.92853 0.91883 0.82199 1.21582 1.33425 1.13862 0.90482 0.89313 1.26058 0.94706 0.95562 1.03221 1.70134 1.37128 1.24424 1.25334 0.85220 0.79094 0.78472 0.76537 1.18590 1.21490 1.18443 1.45178 1.41553 1.11394 1.18197 1.25344 0.98073 0.84593 0.92623 1.70430 1.15315 1.27867 1.11969 1.19595 1.02880 0.90041 0.98268 1.20303 0.96547 0.98830 0.94920 1.21048 1.00457 0.91764 1.00983 1.21340 0.97169 1.00773 0.92570 1.20375 1.00056 0.93145 1.00517 1.19315 0.99407 0.97771 0.91566 0.91647 0.88622 0.87466 0.75025 0.99645 0.99076 0.92287 0.76897 0.84899 0.82143 0.81764 0.83976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.14 71.98 0.66 -1.96 16 2 C 0.13 3.22 3.40 44.25 0.15 3.37 16 3 H 0.15 2.79 7.62 -2.39 -0.02 2.78 16 4 C 0.49 17.80 7.12 87.66 0.62 18.42 16 5 O -0.59 -28.20 15.48 -3.04 -0.05 -28.25 16 6 N -0.69 -26.10 5.44 -466.78 -2.54 -28.64 16 7 C 0.27 13.89 5.43 85.63 0.46 14.35 16 8 C -0.56 -28.54 9.28 25.60 0.24 -28.30 16 9 H 0.09 4.00 7.60 -2.91 -0.02 3.98 16 10 C 0.00 0.23 5.46 84.66 0.46 0.69 16 11 N -0.93 -54.97 13.29 21.45 0.28 -54.69 16 12 Si 0.98 40.62 29.54 68.60 2.03 42.65 16 13 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 14 H -0.29 -12.06 7.11 99.48 0.71 -11.36 16 15 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 16 N -0.47 -14.08 2.45 -501.73 -1.23 -15.30 16 17 C 0.28 9.16 10.71 180.05 1.93 11.09 16 18 N -0.54 -19.19 11.27 -192.04 -2.17 -21.35 16 19 C 0.01 0.31 7.23 39.45 0.29 0.60 16 20 C -0.09 -2.21 10.05 22.25 0.22 -1.99 16 21 C -0.12 -2.29 9.96 22.02 0.22 -2.07 16 22 C -0.10 -1.76 10.03 22.31 0.22 -1.53 16 23 C -0.12 -2.68 9.89 22.32 0.22 -2.46 16 24 C 0.03 0.82 6.87 38.86 0.27 1.09 16 25 H 0.06 1.25 7.95 -2.39 -0.02 1.23 16 26 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.11 1.45 7.56 -2.38 -0.02 1.43 16 28 H 0.41 12.02 7.74 -92.71 -0.72 11.30 16 29 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 30 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.21 6.22 8.06 -2.91 -0.02 6.20 16 33 H 0.13 3.02 8.06 -2.91 -0.02 2.99 16 34 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.14 2.41 7.76 -2.91 -0.02 2.39 16 Total: -1.00 -77.40 314.55 2.68 -74.73 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.38 Total: 19.55 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 5.96 Total: 11.31 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -5.65 Total: -119.98 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.05 Total: -28.25 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -77.40 2.68 -74.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427606853.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.902 kcal (2) G-P(sol) polarization free energy of solvation -77.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds