Wall clock time and date at job start Mon Mar 30 2020 01:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 N 1.46500 * 109.46837 * 119.99433 * 2 1 3 5 5 C 1.34773 * 120.00431 * 275.00470 * 4 2 1 6 6 O 1.21593 * 119.99894 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00097 * 179.72742 * 5 4 2 8 8 C 1.46504 * 119.99854 * 180.27545 * 7 5 4 9 9 C 1.50701 * 109.46923 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00145 * 359.97438 * 9 8 7 11 11 C 1.37869 * 120.00027 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00263 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00327 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47120 * 60.00315 * 13 11 9 15 15 H 1.48504 * 109.47524 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47077 * 300.00283 * 13 11 9 17 17 C 1.50691 * 109.47321 * 239.99926 * 2 1 3 18 18 C 1.38363 * 119.84670 * 279.72722 * 17 2 1 19 19 C 1.37950 * 120.15418 * 179.76589 * 18 17 2 20 20 C 1.39630 * 119.84225 * 0.50858 * 19 18 17 21 21 C 1.43201 * 120.14962 * 179.76573 * 20 19 18 22 22 N 6.84433 * 109.48110 * 239.99610 * 2 1 3 23 23 C 1.39632 * 119.70207 * 359.74560 * 20 19 18 24 24 C 1.37944 * 119.84556 * 359.97438 * 23 20 19 25 25 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 26 26 H 1.09004 * 109.46414 * 60.00139 * 1 2 3 27 27 H 1.08994 * 109.47203 * 180.02562 * 1 2 3 28 28 H 0.97000 * 119.99456 * 95.00032 * 4 2 1 29 29 H 0.97000 * 119.99736 * 0.26819 * 7 5 4 30 30 H 1.08998 * 109.46968 * 299.99782 * 8 7 5 31 31 H 1.08997 * 109.47198 * 59.99605 * 8 7 5 32 32 H 0.96994 * 120.00789 * 180.02562 * 12 11 9 33 33 H 1.08005 * 119.92432 * 0.02562 * 18 17 2 34 34 H 1.07999 * 120.08043 * 180.27428 * 19 18 17 35 35 H 1.07998 * 120.07782 * 179.97438 * 23 20 19 36 36 H 1.08003 * 119.92679 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1617 2.4116 7 7 2.5910 -0.6548 3.4590 8 6 2.7250 0.0746 4.7225 9 6 3.2358 -0.8588 5.7896 10 1 3.4397 -1.8921 5.5508 11 6 3.4427 -0.3937 7.0709 12 7 3.1940 0.8645 7.3620 13 14 4.0765 -1.5505 8.3936 14 1 5.4006 -2.0874 7.9887 15 1 4.2135 -0.8109 9.6740 16 1 3.1200 -2.6727 8.5694 17 6 2.0324 -0.7104 -1.2304 18 6 2.0708 -2.0932 -1.2597 19 6 2.5250 -2.7501 -2.3845 20 6 2.9565 -2.0160 -3.4911 21 6 3.4339 -2.6911 -4.6603 22 7 3.8126 -3.2266 -5.5878 23 6 2.9200 -0.6207 -3.4527 24 6 2.4580 0.0232 -2.3236 25 1 -0.3633 0.5139 0.8898 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 2.2490 -1.6317 1.1527 29 1 2.8216 -1.5960 3.4155 30 1 3.4269 0.8985 4.5936 31 1 1.7531 0.4685 5.0195 32 1 3.3399 1.1919 8.2632 33 1 1.7405 -2.6596 -0.4015 34 1 2.5503 -3.8295 -2.4078 35 1 3.2527 -0.0469 -4.3051 36 1 2.4289 1.1024 -2.2927 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488328906.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:53 Heat of formation + Delta-G solvation = 15.988741 kcal Electronic energy + Delta-G solvation = -19327.006759 eV Core-core repulsion = 16196.997449 eV Total energy + Delta-G solvation = -3130.009310 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.29988 -39.06508 -36.96696 -35.43314 -34.06054 -32.48185 -31.69413 -31.33798 -29.56626 -26.98843 -24.87302 -23.32800 -22.78411 -21.29158 -20.09479 -19.28223 -18.27336 -16.74252 -16.10871 -15.60997 -15.14441 -14.90873 -14.78857 -14.57525 -14.37028 -13.95013 -13.77863 -13.65541 -13.24977 -13.06445 -13.01343 -12.52725 -12.36722 -11.96311 -11.92176 -11.68984 -11.46653 -11.07029 -10.97304 -10.87341 -10.30917 -9.48565 -9.41992 -9.39341 -9.16432 -8.84256 -8.70587 -7.79266 -6.15806 -4.22537 0.36382 0.94384 2.32474 2.56823 3.25314 3.25435 3.30898 3.33961 3.51358 3.53126 3.90648 4.32168 4.34726 4.44175 4.47870 4.91823 5.00284 5.07580 5.20231 5.24059 5.29150 5.37567 5.55597 5.63606 5.80111 5.86971 5.89003 6.15151 6.24031 6.40392 6.80472 7.08198 7.13488 7.49156 7.53104 7.56223 7.88418 8.02764 8.75043 8.91536 9.30723 9.46659 10.94348 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028853 B = 0.003080 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.215797 B = 9087.512329 C = 9713.661337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.197 3.803 3 H 0.100 0.900 4 N -0.753 5.753 5 C 0.695 3.305 6 O -0.599 6.599 7 N -0.729 5.729 8 C 0.267 3.733 9 C -0.543 4.543 10 H 0.062 0.938 11 C 0.064 3.936 12 N -0.885 5.885 13 Si 0.904 3.096 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.276 1.276 17 C -0.052 4.052 18 C -0.115 4.115 19 C -0.065 4.065 20 C -0.037 4.037 21 C 0.257 3.743 22 N -0.422 5.422 23 C -0.066 4.066 24 C -0.109 4.109 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.390 0.610 29 H 0.386 0.614 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.266 0.734 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.431 -5.388 -18.954 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.091 3.909 3 H 0.118 0.882 4 N -0.411 5.411 5 C 0.394 3.606 6 O -0.478 6.478 7 N -0.381 5.381 8 C 0.146 3.854 9 C -0.581 4.581 10 H 0.080 0.920 11 C -0.140 4.140 12 N -0.523 5.523 13 Si 0.731 3.269 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.201 1.201 17 C -0.053 4.053 18 C -0.133 4.133 19 C -0.085 4.085 20 C -0.040 4.040 21 C -0.058 4.058 22 N -0.097 5.097 23 C -0.086 4.086 24 C -0.127 4.127 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.225 0.775 29 H 0.218 0.782 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.094 -4.951 -20.111 20.941 hybrid contribution 0.441 -1.293 1.100 1.754 sum -2.653 -6.244 -19.011 20.185 Atomic orbital electron populations 1.22202 0.94249 1.02341 1.02947 1.19601 0.94047 0.96764 0.80474 0.88219 1.45305 1.73505 1.13336 1.08973 1.16122 0.78886 0.85273 0.80289 1.90875 1.57752 1.14532 1.84650 1.45729 1.68635 1.13598 1.10090 1.18977 0.97266 0.91997 0.77121 1.21184 1.46056 0.96480 0.94394 0.92016 1.24937 0.95238 0.95314 0.98506 1.69962 1.47310 1.14138 1.20872 0.86479 0.79345 0.80501 0.80580 1.20101 1.21089 1.20099 1.20375 0.95457 0.93980 0.95523 1.20930 1.00251 0.93885 0.98228 1.21155 0.95776 1.00163 0.91439 1.16008 1.05564 0.92730 0.89742 1.25755 0.93509 0.93523 0.93029 1.81266 1.09296 1.08361 1.10820 1.21163 0.96881 0.92076 0.98501 1.21004 0.98634 1.00763 0.92315 0.90989 0.91759 0.92418 0.77521 0.78180 0.95727 0.95717 0.92396 0.84772 0.84840 0.84819 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.46 37.16 0.35 -1.28 16 2 C 0.20 2.17 2.77 -69.08 -0.19 1.98 16 3 H 0.10 1.27 7.43 -51.93 -0.39 0.88 16 4 N -0.75 -9.92 5.03 -59.81 -0.30 -10.22 16 5 C 0.69 13.35 8.53 -86.92 -0.74 12.61 16 6 O -0.60 -14.06 16.01 5.28 0.08 -13.97 16 7 N -0.73 -14.88 5.55 -66.41 -0.37 -15.24 16 8 C 0.27 6.98 5.43 -5.19 -0.03 6.95 16 9 C -0.54 -14.48 9.28 -34.44 -0.32 -14.80 16 10 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 13 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 15 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 C -0.05 -0.43 4.96 -104.53 -0.52 -0.95 16 18 C -0.11 -0.81 9.04 -39.64 -0.36 -1.17 16 19 C -0.06 -0.43 9.76 -39.17 -0.38 -0.81 16 20 C -0.04 -0.28 5.73 -106.93 -0.61 -0.89 16 21 C 0.26 2.40 15.33 -22.47 -0.34 2.05 16 22 N -0.42 -4.96 18.54 41.84 0.78 -4.18 16 23 C -0.07 -0.44 9.76 -39.17 -0.38 -0.82 16 24 C -0.11 -0.78 9.65 -39.64 -0.38 -1.16 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.39 4.01 6.85 -40.82 -0.28 3.74 16 29 H 0.39 6.67 8.34 -40.82 -0.34 6.33 16 30 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.13 0.78 6.89 -52.48 -0.36 0.42 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.14 0.80 8.03 -52.48 -0.42 0.37 16 LS Contribution 324.69 15.07 4.89 4.89 Total: -1.00 -33.32 324.69 -7.49 -40.81 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -4.28 Total: 4.08 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -4.01 Total: 3.36 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.84 Total: -54.72 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.08 Total: -13.97 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.32 -7.49 -40.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488328906.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.798 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds