Wall clock time and date at job start Mon Mar 30 2020 01:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 N 1.46500 * 109.46837 * 119.99433 * 2 1 3 5 5 C 1.34773 * 120.00431 * 275.00470 * 4 2 1 6 6 O 1.21593 * 119.99894 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00097 * 179.72742 * 5 4 2 8 8 C 1.46504 * 119.99854 * 180.27545 * 7 5 4 9 9 C 1.50701 * 109.46923 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00145 * 359.97438 * 9 8 7 11 11 C 1.37869 * 120.00027 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00263 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00327 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47120 * 60.00315 * 13 11 9 15 15 H 1.48504 * 109.47524 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47077 * 300.00283 * 13 11 9 17 17 C 1.50691 * 109.47321 * 239.99926 * 2 1 3 18 18 C 1.38363 * 119.84670 * 279.72722 * 17 2 1 19 19 C 1.37950 * 120.15418 * 179.76589 * 18 17 2 20 20 C 1.39630 * 119.84225 * 0.50858 * 19 18 17 21 21 C 1.43201 * 120.14962 * 179.76573 * 20 19 18 22 22 N 6.84433 * 109.48110 * 239.99610 * 2 1 3 23 23 C 1.39632 * 119.70207 * 359.74560 * 20 19 18 24 24 C 1.37944 * 119.84556 * 359.97438 * 23 20 19 25 25 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 26 26 H 1.09004 * 109.46414 * 60.00139 * 1 2 3 27 27 H 1.08994 * 109.47203 * 180.02562 * 1 2 3 28 28 H 0.97000 * 119.99456 * 95.00032 * 4 2 1 29 29 H 0.97000 * 119.99736 * 0.26819 * 7 5 4 30 30 H 1.08998 * 109.46968 * 299.99782 * 8 7 5 31 31 H 1.08997 * 109.47198 * 59.99605 * 8 7 5 32 32 H 0.96994 * 120.00789 * 180.02562 * 12 11 9 33 33 H 1.08005 * 119.92432 * 0.02562 * 18 17 2 34 34 H 1.07999 * 120.08043 * 180.27428 * 19 18 17 35 35 H 1.07998 * 120.07782 * 179.97438 * 23 20 19 36 36 H 1.08003 * 119.92679 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1617 2.4116 7 7 2.5910 -0.6548 3.4590 8 6 2.7250 0.0746 4.7225 9 6 3.2358 -0.8588 5.7896 10 1 3.4397 -1.8921 5.5508 11 6 3.4427 -0.3937 7.0709 12 7 3.1940 0.8645 7.3620 13 14 4.0765 -1.5505 8.3936 14 1 5.4006 -2.0874 7.9887 15 1 4.2135 -0.8109 9.6740 16 1 3.1200 -2.6727 8.5694 17 6 2.0324 -0.7104 -1.2304 18 6 2.0708 -2.0932 -1.2597 19 6 2.5250 -2.7501 -2.3845 20 6 2.9565 -2.0160 -3.4911 21 6 3.4339 -2.6911 -4.6603 22 7 3.8126 -3.2266 -5.5878 23 6 2.9200 -0.6207 -3.4527 24 6 2.4580 0.0232 -2.3236 25 1 -0.3633 0.5139 0.8898 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 2.2490 -1.6317 1.1527 29 1 2.8216 -1.5960 3.4155 30 1 3.4269 0.8985 4.5936 31 1 1.7531 0.4685 5.0195 32 1 3.3399 1.1919 8.2632 33 1 1.7405 -2.6596 -0.4015 34 1 2.5503 -3.8295 -2.4078 35 1 3.2527 -0.0469 -4.3051 36 1 2.4289 1.1024 -2.2927 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488328906.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:52 Heat of formation + Delta-G solvation = -6.703224 kcal Electronic energy + Delta-G solvation = -19327.990756 eV Core-core repulsion = 16196.997449 eV Total energy + Delta-G solvation = -3130.993307 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.25260 -40.25665 -37.83469 -36.57295 -35.86635 -34.36362 -32.69021 -31.99232 -30.50186 -28.88575 -25.72975 -24.66570 -23.82756 -22.43560 -21.48928 -19.96755 -19.76741 -18.17509 -17.59352 -16.68665 -16.46792 -16.29487 -15.94988 -15.58555 -15.14472 -14.99921 -14.90313 -14.57498 -14.38333 -14.18734 -13.96709 -13.84124 -13.76388 -13.23678 -13.09430 -12.86760 -12.66682 -12.58731 -12.20173 -12.08977 -11.84411 -11.45455 -11.17370 -10.75256 -10.26054 -9.94917 -9.78977 -9.53881 -8.24585 -6.40566 -0.26184 0.42167 1.46195 1.50194 1.58048 1.60451 1.81524 2.03180 2.32736 2.42886 2.85006 2.90064 3.10471 3.57393 3.60941 3.89852 3.99239 4.30672 4.35660 4.46185 4.56701 4.75562 4.83039 4.96077 5.07944 5.15362 5.21752 5.32988 5.33968 5.35260 5.46711 5.54144 5.69581 5.75607 5.83910 5.90196 6.31732 6.43260 6.71500 7.28933 7.37692 7.79942 8.87400 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028853 B = 0.003080 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.215797 B = 9087.512329 C = 9713.661337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.196 3.804 3 H 0.080 0.920 4 N -0.728 5.728 5 C 0.694 3.306 6 O -0.645 6.645 7 N -0.724 5.724 8 C 0.286 3.714 9 C -0.554 4.554 10 H 0.084 0.916 11 C 0.004 3.996 12 N -0.931 5.931 13 Si 0.984 3.016 14 H -0.263 1.263 15 H -0.287 1.287 16 H -0.262 1.262 17 C -0.058 4.058 18 C -0.114 4.114 19 C -0.058 4.058 20 C -0.043 4.043 21 C 0.281 3.719 22 N -0.469 5.469 23 C -0.059 4.059 24 C -0.110 4.110 25 H 0.037 0.963 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.409 0.591 29 H 0.404 0.596 30 H -0.015 1.015 31 H -0.014 1.014 32 H 0.268 0.732 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.123 -7.716 -19.668 21.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.091 3.909 3 H 0.098 0.902 4 N -0.386 5.386 5 C 0.394 3.606 6 O -0.528 6.528 7 N -0.378 5.378 8 C 0.163 3.837 9 C -0.592 4.592 10 H 0.102 0.898 11 C -0.196 4.196 12 N -0.569 5.569 13 Si 0.807 3.193 14 H -0.187 1.187 15 H -0.213 1.213 16 H -0.187 1.187 17 C -0.059 4.059 18 C -0.132 4.132 19 C -0.078 4.078 20 C -0.047 4.047 21 C -0.033 4.033 22 N -0.145 5.145 23 C -0.080 4.080 24 C -0.128 4.128 25 H 0.056 0.944 26 H 0.105 0.895 27 H 0.092 0.908 28 H 0.247 0.753 29 H 0.240 0.760 30 H 0.003 0.997 31 H 0.004 0.996 32 H 0.077 0.923 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.789 -7.350 -20.901 22.330 hybrid contribution 0.305 -0.518 1.226 1.365 sum -2.485 -7.868 -19.675 21.335 Atomic orbital electron populations 1.22149 0.93525 1.03219 1.02346 1.19691 0.94644 0.96049 0.80534 0.90222 1.45076 1.71901 1.14015 1.07601 1.16266 0.78311 0.84768 0.81301 1.90846 1.59493 1.16881 1.85572 1.45298 1.69338 1.14195 1.08964 1.18377 0.94035 0.91605 0.79702 1.21582 1.45628 0.97381 0.94585 0.89812 1.26035 0.95223 0.96978 1.01337 1.70130 1.48661 1.16566 1.21587 0.85227 0.79222 0.78115 0.76755 1.18741 1.21268 1.18658 1.20137 0.96760 0.94522 0.94488 1.21057 0.99969 0.93296 0.98909 1.21328 0.94659 1.01138 0.90669 1.16117 1.06085 0.93097 0.89370 1.25950 0.92285 0.92467 0.92643 1.81295 1.11042 1.09863 1.12277 1.21323 0.96001 0.91849 0.98791 1.21129 0.98242 1.01438 0.92038 0.94407 0.89536 0.90755 0.75345 0.76034 0.99696 0.99625 0.92307 0.83273 0.82968 0.83075 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.46 71.98 0.68 -2.31 16 2 C 0.20 4.10 2.77 44.24 0.12 4.22 16 3 H 0.08 2.03 7.43 -2.39 -0.02 2.01 16 4 N -0.73 -18.32 5.03 -461.41 -2.32 -20.64 16 5 C 0.69 26.97 8.53 179.06 1.53 28.50 16 6 O -0.65 -31.55 16.01 -4.01 -0.06 -31.61 16 7 N -0.72 -29.76 5.55 -482.29 -2.68 -32.44 16 8 C 0.29 15.50 5.43 85.63 0.46 15.97 16 9 C -0.55 -29.57 9.28 25.60 0.24 -29.33 16 10 H 0.08 4.00 7.60 -2.91 -0.02 3.98 16 11 C 0.00 0.21 5.46 84.65 0.46 0.67 16 12 N -0.93 -55.63 13.29 21.44 0.28 -55.34 16 13 Si 0.98 41.64 29.54 68.60 2.03 43.66 16 14 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 15 H -0.29 -12.13 7.11 99.48 0.71 -11.43 16 16 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 17 C -0.06 -0.82 4.96 -19.81 -0.10 -0.91 16 18 C -0.11 -1.25 9.04 22.23 0.20 -1.05 16 19 C -0.06 -0.58 9.76 22.54 0.22 -0.36 16 20 C -0.04 -0.53 5.73 -21.36 -0.12 -0.65 16 21 C 0.28 4.72 15.33 88.33 1.35 6.07 16 22 N -0.47 -10.51 18.54 19.00 0.35 -10.16 16 23 C -0.06 -0.63 9.76 22.54 0.22 -0.41 16 24 C -0.11 -1.31 9.65 22.23 0.21 -1.09 16 25 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.41 7.38 6.85 -92.71 -0.64 6.75 16 29 H 0.40 13.44 8.34 -92.71 -0.77 12.66 16 30 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 31 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 32 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 33 H 0.15 1.15 6.89 -2.91 -0.02 1.13 16 34 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 35 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 36 H 0.15 1.42 8.03 -2.91 -0.02 1.39 16 Total: -1.00 -75.28 324.69 2.80 -72.48 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -0.29 Total: 14.73 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: 5.48 Total: 19.32 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -4.36 Total: -118.57 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.06 Total: -31.61 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Total: -75.28 2.80 -72.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488328906.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.776 kcal (2) G-P(sol) polarization free energy of solvation -75.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds