Wall clock time and date at job start Mon Mar 30 2020 01:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46947 * 136.85942 * 3 2 1 5 5 C 1.36640 * 120.00526 * 263.80004 * 4 3 2 6 6 H 1.07997 * 120.00720 * 199.96689 * 5 4 3 7 7 C 1.39166 * 119.99510 * 19.96973 * 5 4 3 8 8 N 1.31298 * 120.00262 * 21.80927 * 7 5 4 9 9 Si 1.86804 * 119.99877 * 201.80816 * 7 5 4 10 10 H 1.48492 * 109.47035 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46961 * 119.99619 * 9 7 5 12 12 H 1.48494 * 109.46956 * 239.99837 * 9 7 5 13 13 C 1.34784 * 119.99949 * 83.79571 * 4 3 2 14 14 O 1.21782 * 119.99936 * 179.97438 * 13 4 3 15 15 C 1.41814 * 119.99797 * 0.28190 * 13 4 3 16 16 C 1.35370 * 119.99859 * 179.72411 * 15 13 4 17 17 C 1.46419 * 119.99767 * 179.97438 * 16 15 13 18 18 N 1.31949 * 125.88966 * 359.68835 * 17 16 15 19 19 C 1.33180 * 109.22090 * 179.82850 * 18 17 16 20 20 C 1.35510 * 108.46444 * 0.43732 * 19 18 17 21 21 N 1.36307 * 107.10290 * 359.73762 * 20 19 18 22 22 C 1.46504 * 126.50697 * 180.02562 * 21 20 19 23 23 C 1.52998 * 109.47099 * 264.95615 * 22 21 20 24 24 H 4.40641 * 5.51316 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.47658 * 16.86329 * 3 2 1 26 26 H 1.09002 * 109.46910 * 256.85577 * 3 2 1 27 27 H 0.97004 * 120.00352 * 180.02562 * 8 7 5 28 28 H 1.08001 * 120.00454 * 359.71775 * 15 13 4 29 29 H 1.08002 * 120.00198 * 359.97438 * 16 15 13 30 30 H 1.08004 * 125.76800 * 180.19097 * 19 18 17 31 31 H 1.07996 * 126.44913 * 179.75745 * 20 19 18 32 32 H 1.09000 * 109.47227 * 24.95559 * 22 21 20 33 33 H 1.09000 * 109.47117 * 144.95414 * 22 21 20 34 34 H 1.09000 * 109.47035 * 300.00062 * 23 22 21 35 35 H 1.09000 * 109.47300 * 59.99911 * 23 22 21 36 36 H 1.08997 * 109.47102 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1339 1.0087 -0.9445 5 6 3.4823 0.6435 -2.2142 6 1 4.1279 1.2798 -2.8013 7 6 3.0050 -0.5484 -2.7510 8 7 1.9222 -1.1035 -2.2578 9 14 3.9051 -1.3588 -4.1733 10 1 5.0877 -0.5398 -4.5416 11 1 4.3505 -2.7162 -3.7682 12 1 2.9929 -1.4648 -5.3402 13 6 3.2390 2.2966 -0.5610 14 8 3.6450 3.1345 -1.3459 15 6 2.8830 2.6747 0.7587 16 6 2.9939 3.9672 1.1456 17 6 2.6258 4.3577 2.5079 18 7 2.1697 3.5510 3.4472 19 6 1.9459 4.2526 4.5569 20 6 2.2599 5.5486 4.3160 21 7 2.6899 5.6235 3.0247 22 6 3.1365 6.8297 2.3233 23 6 1.9658 7.4273 1.5403 24 1 -1.0501 -0.0001 0.0004 25 1 3.0099 -0.9826 -0.2981 26 1 3.0093 0.2345 1.0008 27 1 1.5897 -1.9345 -2.6317 28 1 2.5234 1.9316 1.4550 29 1 3.3538 4.7103 0.4494 30 1 1.5732 3.8563 5.4899 31 1 2.1841 6.3679 5.0155 32 1 3.4984 7.5586 3.0484 33 1 3.9410 6.5725 1.6343 34 1 1.6039 6.6983 0.8152 35 1 1.1614 7.6845 2.2293 36 1 2.2980 8.3249 1.0188 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490996356.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:34 Heat of formation + Delta-G solvation = 117.230726 kcal Electronic energy + Delta-G solvation = -20188.946570 eV Core-core repulsion = 17063.327443 eV Total energy + Delta-G solvation = -3125.619128 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.77963 -38.78776 -35.30293 -34.96800 -33.04785 -32.07083 -31.21910 -30.12615 -28.57301 -26.49291 -25.26630 -23.94009 -22.83628 -21.19335 -19.64404 -18.06720 -17.74550 -17.28331 -16.54907 -16.13833 -15.26393 -15.02217 -14.58142 -14.33300 -13.99478 -13.78915 -13.60576 -13.05767 -12.79661 -12.73334 -12.42711 -12.28087 -12.19118 -11.66918 -11.53475 -11.22003 -11.01990 -10.54615 -10.38522 -9.79560 -9.76829 -9.50450 -9.31556 -9.27862 -8.89349 -8.42433 -7.92394 -7.65032 -6.44756 -3.87407 1.28998 2.56161 2.78876 3.12858 3.21969 3.28933 3.54562 3.81311 4.08943 4.16958 4.43356 4.50166 4.71954 4.79075 4.83725 5.04297 5.05817 5.16992 5.39520 5.47008 5.51056 5.56776 5.67823 5.83936 5.92499 6.07776 6.36214 6.43040 6.68284 6.77044 6.85466 6.99040 7.06141 7.30803 7.45152 8.02999 8.27603 8.37766 8.88230 9.08554 9.27257 9.91534 10.53947 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026889 B = 0.004507 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.053152 B = 6210.968417 C = 6838.068121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.117 4.117 3 C 0.227 3.773 4 N -0.417 5.417 5 C -0.306 4.306 6 H 0.109 0.891 7 C 0.031 3.969 8 N -0.843 5.843 9 Si 0.923 3.077 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.457 3.543 14 O -0.598 6.598 15 C -0.112 4.112 16 C -0.074 4.074 17 C 0.243 3.757 18 N -0.477 5.477 19 C -0.027 4.027 20 C -0.064 4.064 21 N -0.452 5.452 22 C 0.100 3.900 23 C -0.171 4.171 24 H 0.199 0.801 25 H 0.106 0.894 26 H 0.071 0.929 27 H 0.272 0.728 28 H 0.128 0.872 29 H 0.136 0.864 30 H 0.168 0.832 31 H 0.171 0.829 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.167 9.891 10.873 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.118 4.118 3 C 0.104 3.896 4 N -0.132 5.132 5 C -0.434 4.434 6 H 0.126 0.874 7 C -0.175 4.175 8 N -0.479 5.479 9 Si 0.749 3.251 10 H -0.189 1.189 11 H -0.204 1.204 12 H -0.207 1.207 13 C 0.251 3.749 14 O -0.486 6.486 15 C -0.138 4.138 16 C -0.098 4.098 17 C -0.013 4.013 18 N -0.195 5.195 19 C -0.178 4.178 20 C -0.198 4.198 21 N -0.134 5.134 22 C -0.022 4.022 23 C -0.228 4.228 24 H 0.216 0.784 25 H 0.124 0.876 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.146 0.854 29 H 0.154 0.846 30 H 0.185 0.815 31 H 0.188 0.812 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.197 9.392 10.272 13.920 hybrid contribution -0.079 0.335 -0.452 0.568 sum 0.119 9.728 9.820 13.823 Atomic orbital electron populations 1.24236 0.95339 1.02941 1.04582 1.23002 0.94215 0.98076 0.96524 1.18342 0.84601 0.95048 0.91625 1.43745 1.52892 1.05074 1.11495 1.19807 1.27269 1.05327 0.90991 0.87352 1.25460 0.94992 0.97954 0.99135 1.70073 1.17250 1.18936 1.41649 0.85912 0.79827 0.78999 0.80337 1.18949 1.20394 1.20692 1.16774 0.87121 0.82649 0.88385 1.90638 1.52791 1.49337 1.55786 1.22371 0.97884 0.96706 0.96798 1.20813 1.02521 0.97498 0.88981 1.21767 1.03964 0.79797 0.95791 1.70450 1.17074 1.32044 0.99971 1.22296 1.06987 0.90281 0.98233 1.22725 1.09667 1.00476 0.86943 1.45657 1.48409 1.08577 1.10781 1.21871 0.98380 0.84962 0.97023 1.22170 0.97964 1.01857 1.00852 0.78385 0.87579 0.91093 0.91760 0.85386 0.84637 0.81509 0.81182 0.89122 0.88587 0.91156 0.92058 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.48 19.25 29.55 0.57 -4.91 16 2 C -0.12 -2.72 11.07 -37.12 -0.41 -3.13 16 3 C 0.23 5.17 4.79 -6.83 -0.03 5.14 16 4 N -0.42 -10.75 2.59 -121.13 -0.31 -11.06 16 5 C -0.31 -8.36 9.27 -15.07 -0.14 -8.49 16 6 H 0.11 3.10 7.42 -52.49 -0.39 2.71 16 7 C 0.03 0.81 4.83 -17.44 -0.08 0.72 16 8 N -0.84 -21.88 9.59 55.51 0.53 -21.35 16 9 Si 0.92 19.94 29.61 -169.99 -5.03 14.91 16 10 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 C 0.46 11.60 7.34 -14.89 -0.11 11.49 16 14 O -0.60 -16.78 15.77 5.12 0.08 -16.70 16 15 C -0.11 -2.41 8.54 -39.24 -0.34 -2.74 16 16 C -0.07 -1.41 9.26 -37.31 -0.35 -1.76 16 17 C 0.24 4.19 7.66 -154.48 -1.18 3.00 16 18 N -0.48 -8.57 10.76 -11.43 -0.12 -8.69 16 19 C -0.03 -0.38 11.84 -17.94 -0.21 -0.59 16 20 C -0.06 -0.77 11.57 -16.54 -0.19 -0.96 16 21 N -0.45 -6.06 2.79 -114.55 -0.32 -6.38 16 22 C 0.10 0.97 6.60 -4.04 -0.03 0.94 16 23 C -0.17 -1.58 10.24 37.16 0.38 -1.20 16 24 H 0.20 3.54 7.80 -54.09 -0.42 3.12 16 25 H 0.11 2.47 6.61 -51.93 -0.34 2.12 16 26 H 0.07 1.40 6.44 -51.93 -0.33 1.07 16 27 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 28 H 0.13 2.67 5.74 -52.49 -0.30 2.37 16 29 H 0.14 2.51 7.02 -52.49 -0.37 2.14 16 30 H 0.17 1.86 8.06 -52.48 -0.42 1.43 16 31 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.94 7.66 -51.93 -0.40 0.54 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 320.35 15.07 4.83 4.83 Total: -1.00 -33.11 320.35 -6.70 -39.80 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -4.23 Total: 7.13 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -2.12 Total: -2.48 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.22 Total: -47.48 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: 0.08 Total: -16.70 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.11 -6.70 -39.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490996356.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.033 kcal (2) G-P(sol) polarization free energy of solvation -33.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds