Wall clock time and date at job start Mon Mar 30 2020 01:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46947 * 136.85942 * 3 2 1 5 5 C 1.36640 * 120.00526 * 263.80004 * 4 3 2 6 6 H 1.07997 * 120.00720 * 199.96689 * 5 4 3 7 7 C 1.39166 * 119.99510 * 19.96973 * 5 4 3 8 8 N 1.31298 * 120.00262 * 21.80927 * 7 5 4 9 9 Si 1.86804 * 119.99877 * 201.80816 * 7 5 4 10 10 H 1.48492 * 109.47035 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46961 * 119.99619 * 9 7 5 12 12 H 1.48494 * 109.46956 * 239.99837 * 9 7 5 13 13 C 1.34784 * 119.99949 * 83.79571 * 4 3 2 14 14 O 1.21782 * 119.99936 * 179.97438 * 13 4 3 15 15 C 1.41814 * 119.99797 * 0.28190 * 13 4 3 16 16 C 1.35370 * 119.99859 * 179.72411 * 15 13 4 17 17 C 1.46419 * 119.99767 * 179.97438 * 16 15 13 18 18 N 1.31949 * 125.88966 * 359.68835 * 17 16 15 19 19 C 1.33180 * 109.22090 * 179.82850 * 18 17 16 20 20 C 1.35510 * 108.46444 * 0.43732 * 19 18 17 21 21 N 1.36307 * 107.10290 * 359.73762 * 20 19 18 22 22 C 1.46504 * 126.50697 * 180.02562 * 21 20 19 23 23 C 1.52998 * 109.47099 * 264.95615 * 22 21 20 24 24 H 4.40641 * 5.51316 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.47658 * 16.86329 * 3 2 1 26 26 H 1.09002 * 109.46910 * 256.85577 * 3 2 1 27 27 H 0.97004 * 120.00352 * 180.02562 * 8 7 5 28 28 H 1.08001 * 120.00454 * 359.71775 * 15 13 4 29 29 H 1.08002 * 120.00198 * 359.97438 * 16 15 13 30 30 H 1.08004 * 125.76800 * 180.19097 * 19 18 17 31 31 H 1.07996 * 126.44913 * 179.75745 * 20 19 18 32 32 H 1.09000 * 109.47227 * 24.95559 * 22 21 20 33 33 H 1.09000 * 109.47117 * 144.95414 * 22 21 20 34 34 H 1.09000 * 109.47035 * 300.00062 * 23 22 21 35 35 H 1.09000 * 109.47300 * 59.99911 * 23 22 21 36 36 H 1.08997 * 109.47102 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1339 1.0087 -0.9445 5 6 3.4823 0.6435 -2.2142 6 1 4.1279 1.2798 -2.8013 7 6 3.0050 -0.5484 -2.7510 8 7 1.9222 -1.1035 -2.2578 9 14 3.9051 -1.3588 -4.1733 10 1 5.0877 -0.5398 -4.5416 11 1 4.3505 -2.7162 -3.7682 12 1 2.9929 -1.4648 -5.3402 13 6 3.2390 2.2966 -0.5610 14 8 3.6450 3.1345 -1.3459 15 6 2.8830 2.6747 0.7587 16 6 2.9939 3.9672 1.1456 17 6 2.6258 4.3577 2.5079 18 7 2.1697 3.5510 3.4472 19 6 1.9459 4.2526 4.5569 20 6 2.2599 5.5486 4.3160 21 7 2.6899 5.6235 3.0247 22 6 3.1365 6.8297 2.3233 23 6 1.9658 7.4273 1.5403 24 1 -1.0501 -0.0001 0.0004 25 1 3.0099 -0.9826 -0.2981 26 1 3.0093 0.2345 1.0008 27 1 1.5897 -1.9345 -2.6317 28 1 2.5234 1.9316 1.4550 29 1 3.3538 4.7103 0.4494 30 1 1.5732 3.8563 5.4899 31 1 2.1841 6.3679 5.0155 32 1 3.4984 7.5586 3.0484 33 1 3.9410 6.5725 1.6343 34 1 1.6039 6.6983 0.8152 35 1 1.1614 7.6845 2.2293 36 1 2.2980 8.3249 1.0188 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490996356.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:33 Heat of formation + Delta-G solvation = 97.634108 kcal Electronic energy + Delta-G solvation = -20189.796343 eV Core-core repulsion = 17063.327443 eV Total energy + Delta-G solvation = -3126.468901 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.91452 -40.69637 -37.22585 -35.92729 -34.69904 -33.90504 -33.07050 -31.09662 -29.89943 -28.30361 -27.03084 -25.04495 -24.24698 -22.33398 -21.05009 -19.81501 -19.41081 -18.73345 -18.32182 -17.62489 -16.69792 -16.34555 -16.12755 -15.82673 -15.67397 -15.00521 -14.78303 -14.43391 -14.30105 -14.24633 -14.09039 -13.60118 -13.53218 -13.01464 -12.92709 -12.73077 -12.51142 -12.24296 -12.12090 -11.28705 -11.12498 -11.11205 -10.95410 -10.71981 -10.66286 -10.40344 -9.88109 -8.92511 -8.37979 -5.93205 -0.18874 1.31167 1.43298 1.46241 1.57689 1.77262 2.02116 2.22847 2.31852 2.39004 2.62255 3.12325 3.20751 3.51617 3.75981 3.85178 3.89218 4.06201 4.18325 4.32715 4.36253 4.50137 4.60639 4.66959 4.78962 4.80324 4.86437 5.14936 5.17161 5.29514 5.38137 5.42065 5.42831 5.83965 6.04892 6.18608 6.41811 7.09271 7.11568 7.13514 7.33655 7.95925 8.59968 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026889 B = 0.004507 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.053152 B = 6210.968417 C = 6838.068121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.155 4.155 3 C 0.232 3.768 4 N -0.431 5.431 5 C -0.350 4.350 6 H 0.081 0.919 7 C 0.004 3.996 8 N -0.861 5.861 9 Si 0.990 3.010 10 H -0.271 1.271 11 H -0.263 1.263 12 H -0.278 1.278 13 C 0.456 3.544 14 O -0.639 6.639 15 C -0.153 4.153 16 C -0.024 4.024 17 C 0.190 3.810 18 N -0.503 5.503 19 C -0.055 4.055 20 C -0.024 4.024 21 N -0.442 5.442 22 C 0.090 3.910 23 C -0.166 4.166 24 H 0.233 0.767 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.276 0.724 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.193 0.807 31 H 0.223 0.777 32 H 0.133 0.867 33 H 0.091 0.909 34 H 0.036 0.964 35 H 0.068 0.932 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.386 11.650 13.064 17.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.157 4.157 3 C 0.110 3.890 4 N -0.146 5.146 5 C -0.478 4.478 6 H 0.099 0.901 7 C -0.202 4.202 8 N -0.496 5.496 9 Si 0.813 3.187 10 H -0.195 1.195 11 H -0.187 1.187 12 H -0.203 1.203 13 C 0.251 3.749 14 O -0.530 6.530 15 C -0.178 4.178 16 C -0.047 4.047 17 C -0.065 4.065 18 N -0.222 5.222 19 C -0.206 4.206 20 C -0.160 4.160 21 N -0.123 5.123 22 C -0.030 4.030 23 C -0.224 4.224 24 H 0.250 0.750 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.087 0.913 28 H 0.149 0.851 29 H 0.153 0.847 30 H 0.210 0.790 31 H 0.240 0.760 32 H 0.151 0.849 33 H 0.109 0.891 34 H 0.056 0.944 35 H 0.088 0.912 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.360 11.138 12.457 16.714 hybrid contribution 0.014 0.094 -0.853 0.859 sum -0.346 11.231 11.604 16.153 Atomic orbital electron populations 1.25111 0.96336 1.01398 1.03107 1.23334 0.94917 0.99508 0.97916 1.18336 0.84874 0.93795 0.91997 1.43842 1.53469 1.05727 1.11553 1.19695 1.29172 1.06686 0.92255 0.90115 1.26177 0.95215 0.97466 1.01308 1.70150 1.17703 1.19106 1.42632 0.84939 0.78283 0.78253 0.77195 1.19548 1.18740 1.20338 1.17348 0.85756 0.82329 0.89452 1.90576 1.54639 1.50464 1.57306 1.21971 1.02577 0.97938 0.95318 1.20935 0.97462 0.96327 0.89985 1.21276 1.08093 0.81852 0.95236 1.70341 1.16663 1.33889 1.01333 1.22915 1.08118 0.91312 0.98295 1.23589 1.05016 1.01068 0.86311 1.45939 1.46735 1.08275 1.11324 1.22258 0.98386 0.84267 0.98104 1.22147 0.98045 1.01849 1.00378 0.75013 0.88674 0.88884 0.91343 0.85109 0.84689 0.78989 0.76013 0.84878 0.89068 0.94443 0.91248 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -10.43 19.25 74.32 1.43 -8.99 16 2 C -0.16 -7.40 11.07 31.13 0.34 -7.06 16 3 C 0.23 11.06 4.79 84.58 0.40 11.47 16 4 N -0.43 -23.49 2.59 -655.33 -1.69 -25.18 16 5 C -0.35 -20.23 9.27 84.17 0.78 -19.45 16 6 H 0.08 4.97 7.42 -2.91 -0.02 4.95 16 7 C 0.00 0.20 4.83 85.00 0.41 0.61 16 8 N -0.86 -45.56 9.59 21.70 0.21 -45.35 16 9 Si 0.99 41.95 29.61 68.60 2.03 43.98 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 11 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 12 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 13 C 0.46 24.52 7.34 85.12 0.62 25.15 16 14 O -0.64 -38.07 15.77 -4.61 -0.07 -38.14 16 15 C -0.15 -6.87 8.54 22.49 0.19 -6.68 16 16 C -0.02 -0.93 9.26 23.74 0.22 -0.71 16 17 C 0.19 6.38 7.66 135.83 1.04 7.42 16 18 N -0.50 -17.47 10.76 -190.06 -2.05 -19.52 16 19 C -0.06 -1.39 11.84 83.86 0.99 -0.40 16 20 C -0.02 -0.46 11.57 83.37 0.96 0.51 16 21 N -0.44 -10.47 2.79 -516.33 -1.44 -11.91 16 22 C 0.09 1.44 6.60 86.38 0.57 2.01 16 23 C -0.17 -2.64 10.24 71.98 0.74 -1.90 16 24 H 0.23 7.90 7.80 -4.41 -0.03 7.87 16 25 H 0.10 4.64 6.61 -2.39 -0.02 4.62 16 26 H 0.09 3.87 6.44 -2.39 -0.02 3.85 16 27 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 28 H 0.13 5.71 5.74 -2.91 -0.02 5.69 16 29 H 0.14 5.15 7.02 -2.91 -0.02 5.13 16 30 H 0.19 3.61 8.06 -2.91 -0.02 3.59 16 31 H 0.22 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.58 7.66 -2.39 -0.02 1.56 16 34 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -76.39 320.35 6.78 -69.60 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 1.08 Total: 24.54 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 8.71 Total: 1.98 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -4.97 Total: -101.96 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -0.07 Total: -38.14 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -76.39 6.78 -69.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490996356.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.237 kcal (2) G-P(sol) polarization free energy of solvation -76.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds