Wall clock time and date at job start Mon Mar 30 2020 01:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47052 * 2 1 4 4 N 1.46499 * 109.47188 * 183.66591 * 3 2 1 5 5 C 1.36916 * 119.99508 * 263.13862 * 4 3 2 6 6 H 1.07998 * 119.99740 * 141.83982 * 5 4 3 7 7 C 1.38955 * 120.00077 * 321.83870 * 5 4 3 8 8 N 1.31432 * 120.00086 * 155.73247 * 7 5 4 9 9 Si 1.86798 * 120.00192 * 335.73062 * 7 5 4 10 10 H 1.48497 * 109.47047 * 83.91327 * 9 7 5 11 11 H 1.48496 * 109.47203 * 203.91445 * 9 7 5 12 12 H 1.48500 * 109.46961 * 323.91296 * 9 7 5 13 13 C 1.34767 * 120.00400 * 83.14010 * 4 3 2 14 14 O 1.21816 * 120.00093 * 185.04728 * 13 4 3 15 15 C 1.41681 * 120.00073 * 5.04853 * 13 4 3 16 16 C 1.38661 * 126.79242 * 338.17642 * 15 13 4 17 17 N 1.32297 * 108.20451 * 180.02562 * 16 15 13 18 18 C 1.33227 * 109.82753 * 0.02562 * 17 16 15 19 19 C 1.40622 * 131.80425 * 180.02562 * 18 17 16 20 20 C 1.36318 * 119.38899 * 179.97438 * 19 18 17 21 21 C 1.40162 * 119.61464 * 359.81748 * 20 19 18 22 22 C 1.35277 * 120.12096 * 0.40337 * 21 20 19 23 23 N 1.35977 * 120.63323 * 359.55787 * 22 21 20 24 24 H 1.09000 * 109.47502 * 305.04510 * 1 2 3 25 25 H 1.09003 * 109.47351 * 65.05004 * 1 2 3 26 26 H 1.09001 * 109.46965 * 185.04919 * 1 2 3 27 27 H 1.08998 * 109.47402 * 239.99980 * 2 1 3 28 28 H 1.08994 * 109.47116 * 119.99659 * 2 1 3 29 29 H 1.08999 * 109.46891 * 63.65718 * 3 2 1 30 30 H 1.09003 * 109.46930 * 303.66384 * 3 2 1 31 31 H 0.97001 * 120.00770 * 179.97438 * 8 7 5 32 32 H 1.07998 * 125.90018 * 0.02645 * 16 15 13 33 33 H 1.08002 * 120.30631 * 359.97438 * 19 18 17 34 34 H 1.07999 * 120.19000 * 179.97438 * 20 19 18 35 35 H 1.07998 * 119.93998 * 180.23482 * 21 20 19 36 36 H 1.08002 * 119.68370 * 179.84247 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5023 1.4436 -0.0883 5 6 4.2566 1.5606 1.0483 6 1 5.1716 0.9959 1.1496 7 6 3.8448 2.4058 2.0715 8 7 4.2489 2.1915 3.3037 9 14 2.7170 3.8467 1.6958 10 1 1.3075 3.3799 1.6757 11 1 2.8788 4.8879 2.7421 12 1 3.0683 4.4178 0.3708 13 6 4.1050 1.3293 -1.2883 14 8 5.3179 1.2376 -1.3543 15 6 3.3280 1.3160 -2.4729 16 6 1.9840 0.9924 -2.5810 17 7 1.6339 1.1000 -3.8522 18 6 2.6842 1.4776 -4.5798 19 6 2.8302 1.7271 -5.9560 20 6 4.0453 2.1094 -6.4413 21 6 5.1284 2.2517 -5.5630 22 6 4.9691 2.0027 -4.2429 23 7 3.7602 1.6216 -3.7506 24 1 -0.3634 0.5901 0.8413 25 1 -0.3634 0.4335 -0.9318 26 1 -0.3633 -1.0237 0.0904 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5137 0.8900 29 1 1.7311 1.9371 0.9210 30 1 1.6239 1.9750 -0.8554 31 1 3.9618 2.7817 4.0179 32 1 1.3351 0.7027 -1.7678 33 1 1.9874 1.6169 -6.6223 34 1 4.1721 2.3040 -7.4960 35 1 6.0925 2.5579 -5.9413 36 1 5.8091 2.1120 -3.5729 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000536550633.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:55 Heat of formation + Delta-G solvation = 91.456594 kcal Electronic energy + Delta-G solvation = -21355.629951 eV Core-core repulsion = 18228.893173 eV Total energy + Delta-G solvation = -3126.736778 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.64851 -39.04883 -37.12823 -35.83713 -33.37018 -33.18300 -31.72813 -30.16432 -29.04465 -26.08436 -25.31027 -23.60887 -22.74154 -21.92766 -21.47457 -19.72855 -17.23707 -16.99778 -16.75617 -16.62802 -15.83161 -15.47804 -15.26711 -14.87332 -14.38989 -14.03034 -13.68814 -13.22701 -12.60352 -12.52081 -12.46308 -12.28303 -11.94763 -11.82171 -11.70792 -11.56650 -10.99917 -10.90408 -10.80544 -10.64225 -10.13496 -10.05447 -9.92718 -9.18398 -8.74055 -8.63223 -7.89575 -7.60235 -6.53930 -4.05017 0.85341 1.12549 2.61924 2.74862 2.97825 3.16836 3.23166 3.63755 4.02689 4.06369 4.30757 4.41160 4.68067 4.82643 4.92068 4.99177 5.19951 5.30063 5.42742 5.48284 5.57552 5.58271 5.71055 5.80174 5.94479 6.02154 6.06865 6.14323 6.17634 6.28843 6.48411 6.59524 6.71369 6.78921 7.20890 7.42749 7.97114 8.15869 8.38361 8.81781 9.17447 9.61993 10.56992 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021719 B = 0.006859 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.904442 B = 4081.009134 C = 4719.194112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.154 4.154 3 C 0.065 3.935 4 N -0.440 5.440 5 C -0.313 4.313 6 H 0.110 0.890 7 C 0.066 3.934 8 N -0.850 5.850 9 Si 0.867 3.133 10 H -0.265 1.265 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.528 3.472 14 O -0.577 6.577 15 C -0.098 4.098 16 C 0.041 3.959 17 N -0.498 5.498 18 C 0.218 3.782 19 C -0.090 4.090 20 C -0.098 4.098 21 C -0.160 4.160 22 C 0.085 3.915 23 N -0.329 5.329 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.277 0.723 32 H 0.217 0.783 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.150 0.850 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.476 0.197 -13.910 14.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.192 4.192 3 C -0.059 4.059 4 N -0.159 5.159 5 C -0.440 4.440 6 H 0.127 0.873 7 C -0.141 4.141 8 N -0.485 5.485 9 Si 0.693 3.307 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.189 1.189 13 C 0.319 3.681 14 O -0.462 6.462 15 C -0.213 4.213 16 C -0.116 4.116 17 N -0.218 5.218 18 C -0.022 4.022 19 C -0.110 4.110 20 C -0.122 4.122 21 C -0.181 4.181 22 C -0.039 4.039 23 N 0.000 5.000 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.232 0.768 33 H 0.167 0.833 34 H 0.158 0.842 35 H 0.168 0.832 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.590 0.065 -13.926 15.006 hybrid contribution 0.248 0.992 0.337 1.077 sum -5.342 1.057 -13.589 14.639 Atomic orbital electron populations 1.21816 0.95481 1.02055 1.01971 1.22132 0.95562 0.97732 1.03748 1.22542 0.83000 0.97099 1.03244 1.43432 1.04168 1.63114 1.05193 1.19015 1.08671 1.25775 0.90545 0.87281 1.25338 0.97022 0.97208 0.94560 1.69780 1.43372 1.36170 0.99141 0.87234 0.80617 0.83412 0.79409 1.19207 1.20936 1.18874 1.15502 0.86855 0.83936 0.81846 1.90682 1.13753 1.55081 1.86658 1.20533 0.96663 1.18677 0.85417 1.24698 0.92649 0.99221 0.94988 1.70472 1.25888 1.21775 1.03617 1.21063 0.83457 1.04661 0.93046 1.20222 0.99111 1.01661 0.90032 1.21036 0.91952 0.98751 1.00441 1.20827 1.00895 1.04955 0.91378 1.22047 0.87961 0.97426 0.96494 1.42411 1.09197 1.40491 1.07851 0.92228 0.92526 0.92228 0.91138 0.89849 0.89369 0.90940 0.91266 0.76754 0.83312 0.84164 0.83189 0.80902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.68 37.15 0.36 -1.73 16 2 C -0.15 -2.63 5.16 -26.73 -0.14 -2.77 16 3 C 0.06 1.32 3.54 -4.04 -0.01 1.30 16 4 N -0.44 -10.80 2.16 -118.02 -0.26 -11.05 16 5 C -0.31 -8.70 9.34 -15.02 -0.14 -8.84 16 6 H 0.11 3.40 7.88 -52.49 -0.41 2.98 16 7 C 0.07 1.79 5.21 -17.46 -0.09 1.70 16 8 N -0.85 -23.71 13.96 55.50 0.77 -22.94 16 9 Si 0.87 20.10 25.65 -169.99 -4.36 15.74 16 10 H -0.27 -5.59 6.17 56.52 0.35 -5.24 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 13 C 0.53 13.02 7.33 -14.95 -0.11 12.91 16 14 O -0.58 -15.77 15.55 5.08 0.08 -15.69 16 15 C -0.10 -2.09 6.52 -83.47 -0.54 -2.63 16 16 C 0.04 0.78 8.44 -17.19 -0.15 0.64 16 17 N -0.50 -9.25 11.25 -12.24 -0.14 -9.39 16 18 C 0.22 3.79 7.77 -156.03 -1.21 2.58 16 19 C -0.09 -1.15 10.10 -39.37 -0.40 -1.55 16 20 C -0.10 -1.02 10.07 -39.55 -0.40 -1.42 16 21 C -0.16 -1.86 10.00 -39.91 -0.40 -2.26 16 22 C 0.09 1.37 10.54 -16.77 -0.18 1.19 16 23 N -0.33 -6.24 2.96 -60.13 -0.18 -6.42 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.70 7.18 -51.93 -0.37 0.33 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.21 6.13 -51.93 -0.32 0.89 16 28 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.09 1.86 3.59 -51.93 -0.19 1.68 16 30 H 0.07 1.38 5.13 -51.93 -0.27 1.12 16 31 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.22 3.70 1.85 -52.49 -0.10 3.60 16 33 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 36 H 0.17 2.91 7.08 -52.49 -0.37 2.54 16 LS Contribution 291.35 15.07 4.39 4.39 Total: -1.00 -32.65 291.35 -6.84 -39.50 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -3.75 Total: 6.77 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -3.41 Total: -0.90 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 0.20 Total: -49.81 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: 0.08 Total: -15.69 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.36 Total: 15.74 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.65 -6.84 -39.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536550633.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.953 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds