Wall clock time and date at job start Mon Mar 30 2020 01:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47052 * 2 1 4 4 N 1.46499 * 109.47188 * 183.66591 * 3 2 1 5 5 C 1.36916 * 119.99508 * 263.13862 * 4 3 2 6 6 H 1.07998 * 119.99740 * 141.83982 * 5 4 3 7 7 C 1.38955 * 120.00077 * 321.83870 * 5 4 3 8 8 N 1.31432 * 120.00086 * 155.73247 * 7 5 4 9 9 Si 1.86798 * 120.00192 * 335.73062 * 7 5 4 10 10 H 1.48497 * 109.47047 * 83.91327 * 9 7 5 11 11 H 1.48496 * 109.47203 * 203.91445 * 9 7 5 12 12 H 1.48500 * 109.46961 * 323.91296 * 9 7 5 13 13 C 1.34767 * 120.00400 * 83.14010 * 4 3 2 14 14 O 1.21816 * 120.00093 * 185.04728 * 13 4 3 15 15 C 1.41681 * 120.00073 * 5.04853 * 13 4 3 16 16 C 1.38661 * 126.79242 * 338.17642 * 15 13 4 17 17 N 1.32297 * 108.20451 * 180.02562 * 16 15 13 18 18 C 1.33227 * 109.82753 * 0.02562 * 17 16 15 19 19 C 1.40622 * 131.80425 * 180.02562 * 18 17 16 20 20 C 1.36318 * 119.38899 * 179.97438 * 19 18 17 21 21 C 1.40162 * 119.61464 * 359.81748 * 20 19 18 22 22 C 1.35277 * 120.12096 * 0.40337 * 21 20 19 23 23 N 1.35977 * 120.63323 * 359.55787 * 22 21 20 24 24 H 1.09000 * 109.47502 * 305.04510 * 1 2 3 25 25 H 1.09003 * 109.47351 * 65.05004 * 1 2 3 26 26 H 1.09001 * 109.46965 * 185.04919 * 1 2 3 27 27 H 1.08998 * 109.47402 * 239.99980 * 2 1 3 28 28 H 1.08994 * 109.47116 * 119.99659 * 2 1 3 29 29 H 1.08999 * 109.46891 * 63.65718 * 3 2 1 30 30 H 1.09003 * 109.46930 * 303.66384 * 3 2 1 31 31 H 0.97001 * 120.00770 * 179.97438 * 8 7 5 32 32 H 1.07998 * 125.90018 * 0.02645 * 16 15 13 33 33 H 1.08002 * 120.30631 * 359.97438 * 19 18 17 34 34 H 1.07999 * 120.19000 * 179.97438 * 20 19 18 35 35 H 1.07998 * 119.93998 * 180.23482 * 21 20 19 36 36 H 1.08002 * 119.68370 * 179.84247 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5023 1.4436 -0.0883 5 6 4.2566 1.5606 1.0483 6 1 5.1716 0.9959 1.1496 7 6 3.8448 2.4058 2.0715 8 7 4.2489 2.1915 3.3037 9 14 2.7170 3.8467 1.6958 10 1 1.3075 3.3799 1.6757 11 1 2.8788 4.8879 2.7421 12 1 3.0683 4.4178 0.3708 13 6 4.1050 1.3293 -1.2883 14 8 5.3179 1.2376 -1.3543 15 6 3.3280 1.3160 -2.4729 16 6 1.9840 0.9924 -2.5810 17 7 1.6339 1.1000 -3.8522 18 6 2.6842 1.4776 -4.5798 19 6 2.8302 1.7271 -5.9560 20 6 4.0453 2.1094 -6.4413 21 6 5.1284 2.2517 -5.5630 22 6 4.9691 2.0027 -4.2429 23 7 3.7602 1.6216 -3.7506 24 1 -0.3634 0.5901 0.8413 25 1 -0.3634 0.4335 -0.9318 26 1 -0.3633 -1.0237 0.0904 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5137 0.8900 29 1 1.7311 1.9371 0.9210 30 1 1.6239 1.9750 -0.8554 31 1 3.9618 2.7817 4.0179 32 1 1.3351 0.7027 -1.7678 33 1 1.9874 1.6169 -6.6223 34 1 4.1721 2.3040 -7.4960 35 1 6.0925 2.5579 -5.9413 36 1 5.8091 2.1120 -3.5729 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000536550633.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:54 Heat of formation + Delta-G solvation = 69.650748 kcal Electronic energy + Delta-G solvation = -21356.575523 eV Core-core repulsion = 18228.893173 eV Total energy + Delta-G solvation = -3127.682350 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.99476 -40.78405 -38.45367 -37.52720 -35.02010 -34.57165 -33.53782 -31.43205 -30.45005 -27.62211 -27.02214 -24.88512 -24.21406 -23.27454 -22.86613 -21.33907 -19.15554 -18.54000 -18.22620 -17.85259 -17.31276 -17.17023 -16.73647 -16.03446 -15.76829 -15.68969 -15.41923 -14.77424 -14.48534 -14.19128 -13.74223 -13.49315 -13.31594 -13.27793 -12.93918 -12.85890 -12.61363 -12.31265 -12.20952 -12.00710 -11.96917 -11.58381 -11.51180 -11.07659 -10.62050 -9.94238 -9.84821 -8.95229 -8.61674 -6.19680 -0.29048 -0.12391 1.10271 1.21633 1.32415 1.37011 1.42919 2.09578 2.24668 2.49990 2.65286 2.87985 3.16550 3.48547 3.74390 3.83559 3.92207 4.01295 4.04272 4.15929 4.24496 4.30449 4.49826 4.55832 4.60221 4.81896 4.92179 5.06630 5.10595 5.14613 5.21813 5.33321 5.40195 5.49899 5.55472 5.94686 5.96346 6.42475 6.59496 6.79134 7.13321 7.68021 8.54730 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021719 B = 0.006859 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.904442 B = 4081.009134 C = 4719.194112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.063 3.937 4 N -0.452 5.452 5 C -0.336 4.336 6 H 0.051 0.949 7 C 0.029 3.971 8 N -0.892 5.892 9 Si 0.929 3.071 10 H -0.222 1.222 11 H -0.275 1.275 12 H -0.279 1.279 13 C 0.529 3.471 14 O -0.624 6.624 15 C -0.159 4.159 16 C 0.063 3.937 17 N -0.516 5.516 18 C 0.217 3.783 19 C -0.098 4.098 20 C -0.067 4.067 21 C -0.120 4.120 22 C 0.031 3.969 23 N -0.335 5.335 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.285 0.715 32 H 0.229 0.771 33 H 0.184 0.816 34 H 0.200 0.800 35 H 0.194 0.806 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.068 1.425 -18.121 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C -0.059 4.059 4 N -0.171 5.171 5 C -0.464 4.464 6 H 0.069 0.931 7 C -0.176 4.176 8 N -0.528 5.528 9 Si 0.751 3.249 10 H -0.146 1.146 11 H -0.200 1.200 12 H -0.204 1.204 13 C 0.322 3.678 14 O -0.512 6.512 15 C -0.273 4.273 16 C -0.095 4.095 17 N -0.236 5.236 18 C -0.023 4.023 19 C -0.118 4.118 20 C -0.090 4.090 21 C -0.140 4.140 22 C -0.093 4.093 23 N -0.004 5.004 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.245 0.755 33 H 0.201 0.799 34 H 0.217 0.783 35 H 0.211 0.789 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.205 1.283 -18.134 19.945 hybrid contribution 1.235 0.575 1.283 1.872 sum -6.970 1.858 -16.851 18.330 Atomic orbital electron populations 1.21802 0.91847 1.03835 1.03109 1.22072 0.98539 0.95314 1.02664 1.22747 0.80387 0.99355 1.03423 1.43449 1.05740 1.63733 1.04206 1.18566 1.08172 1.26855 0.92760 0.93135 1.25973 0.98885 0.98980 0.93758 1.69859 1.45384 1.37406 1.00130 0.86253 0.80938 0.79373 0.78314 1.14618 1.20017 1.20380 1.15980 0.86633 0.82107 0.83080 1.90619 1.15973 1.57008 1.87604 1.20010 0.97472 1.24300 0.85515 1.24836 0.91596 0.97309 0.95796 1.70501 1.26452 1.23416 1.03211 1.21957 0.82603 1.03160 0.94598 1.20854 1.01531 1.01359 0.88033 1.21746 0.89900 0.94624 1.02778 1.21500 1.03232 1.00041 0.89182 1.22254 0.87144 1.01555 0.98395 1.42522 1.10368 1.40296 1.07219 0.91530 0.90960 0.90124 0.91481 0.91783 0.89990 0.89270 0.90544 0.75543 0.79860 0.78335 0.78939 0.83397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.68 71.98 0.70 -2.95 16 2 C -0.15 -5.10 5.16 30.59 0.16 -4.94 16 3 C 0.06 2.60 3.54 86.38 0.31 2.90 16 4 N -0.45 -23.61 2.16 -645.48 -1.40 -25.01 16 5 C -0.34 -20.25 9.34 84.07 0.79 -19.47 16 6 H 0.05 3.54 7.88 -2.91 -0.02 3.51 16 7 C 0.03 1.62 5.21 84.92 0.44 2.06 16 8 N -0.89 -52.32 13.96 21.67 0.30 -52.01 16 9 Si 0.93 42.12 25.65 68.60 1.76 43.88 16 10 H -0.22 -8.53 6.17 99.48 0.61 -7.91 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 13 C 0.53 28.03 7.33 85.09 0.62 28.66 16 14 O -0.62 -37.38 15.55 -4.72 -0.07 -37.46 16 15 C -0.16 -7.02 6.52 39.07 0.25 -6.76 16 16 C 0.06 2.40 8.44 84.72 0.72 3.11 16 17 N -0.52 -18.31 11.25 -192.63 -2.17 -20.47 16 18 C 0.22 7.04 7.77 133.98 1.04 8.08 16 19 C -0.10 -2.01 10.10 22.40 0.23 -1.78 16 20 C -0.07 -0.96 10.07 22.29 0.22 -0.73 16 21 C -0.12 -2.27 10.00 22.05 0.22 -2.05 16 22 C 0.03 0.98 10.54 83.37 0.88 1.86 16 23 N -0.33 -12.70 2.96 -344.15 -1.02 -13.72 16 24 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.07 1.57 7.18 -2.39 -0.02 1.55 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 2.35 6.13 -2.39 -0.01 2.34 16 28 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.08 3.42 3.59 -2.39 -0.01 3.42 16 30 H 0.09 3.36 5.13 -2.39 -0.01 3.35 16 31 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.23 7.64 1.85 -2.91 -0.01 7.64 16 33 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.20 0.76 8.06 -2.91 -0.02 0.73 16 35 H 0.19 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.15 5.36 7.08 -2.91 -0.02 5.34 16 Total: -1.00 -81.15 291.35 5.01 -76.14 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 1.03 Total: 20.65 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 6.57 Total: 8.00 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -4.28 Total: -111.22 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -0.07 Total: -37.46 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.76 Total: 43.88 kcal Total: -81.15 5.01 -76.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536550633.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.795 kcal (2) G-P(sol) polarization free energy of solvation -81.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds