Wall clock time and date at job start Mon Mar 30 2020 01:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47250 * 2 1 4 4 C 1.50694 * 109.47682 * 239.99596 * 2 1 3 5 5 H 1.07997 * 120.00643 * 240.00521 * 4 2 1 6 6 C 1.37880 * 119.99767 * 59.99949 * 4 2 1 7 7 N 1.31520 * 120.00071 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99933 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.47092 * 269.99478 * 8 6 4 10 10 H 1.48498 * 109.47324 * 29.99796 * 8 6 4 11 11 H 1.48502 * 109.47301 * 150.00107 * 8 6 4 12 12 N 1.46500 * 109.46952 * 119.99754 * 2 1 3 13 13 C 1.34775 * 120.00103 * 275.00613 * 12 2 1 14 14 O 1.21592 * 120.00136 * 359.97438 * 13 12 2 15 15 N 1.34774 * 120.00489 * 179.97438 * 13 12 2 16 16 C 1.40057 * 120.00365 * 174.36181 * 15 13 12 17 17 C 1.38384 * 120.17175 * 335.20548 * 16 15 13 18 18 C 1.38736 * 120.57876 * 179.97438 * 17 16 15 19 19 C 1.36647 * 120.59114 * 359.97438 * 18 17 16 20 20 C 1.39744 * 119.89754 * 0.02562 * 19 18 17 21 21 C 1.46483 * 133.98624 * 180.02562 * 20 19 18 22 22 C 1.34255 * 107.00994 * 179.97438 * 21 20 19 23 23 N 1.36760 * 109.91616 * 0.02562 * 22 21 20 24 24 H 0.97004 * 125.07750 * 180.02562 * 23 22 21 25 25 C 1.37795 * 109.84714 * 359.75573 * 23 22 21 26 26 H 1.09003 * 109.46649 * 60.00407 * 1 2 3 27 27 H 1.09004 * 109.46864 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47141 * 300.00412 * 1 2 3 29 29 H 0.96997 * 119.99943 * 180.02562 * 7 6 4 30 30 H 0.97002 * 120.00464 * 94.99527 * 12 2 1 31 31 H 0.97002 * 119.99736 * 354.36430 * 15 13 12 32 32 H 1.07995 * 119.71117 * 359.95677 * 17 16 15 33 33 H 1.08004 * 119.69964 * 179.97438 * 18 17 16 34 34 H 1.08006 * 120.04973 * 179.97438 * 19 18 17 35 35 H 1.07995 * 126.49040 * 359.97438 * 21 20 19 36 36 H 1.08000 * 125.03923 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1383 -0.8592 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8743 -2.6995 10 1 0.8491 2.1772 -1.4923 11 1 0.9773 1.9952 -3.9071 12 7 2.0183 -0.6906 1.1962 13 6 2.1469 -0.0182 2.3572 14 8 1.8581 1.1616 2.4117 15 7 2.5956 -0.6536 3.4578 16 6 2.8417 0.0689 4.6322 17 6 3.1295 1.4210 4.5695 18 6 3.3741 2.1450 5.7275 19 6 3.3345 1.5357 6.9499 20 6 3.0459 0.1713 7.0391 21 6 2.9253 -0.7723 8.1531 22 6 2.6261 -1.9691 7.6233 23 7 2.5459 -1.8690 6.2618 24 1 2.3415 -2.6019 5.6600 25 6 2.7927 -0.5704 5.8728 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.9043 -0.5276 -4.4375 30 1 2.2490 -1.6318 1.1528 31 1 2.7482 -1.6113 3.4366 32 1 3.1644 1.9170 3.6108 33 1 3.5978 3.1996 5.6620 34 1 3.5266 2.1076 7.8457 35 1 3.0529 -0.5478 9.2017 36 1 2.4716 -2.8763 8.1886 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547851669.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:03 Heat of formation + Delta-G solvation = 41.384258 kcal Electronic energy + Delta-G solvation = -20235.158030 eV Core-core repulsion = 17106.249952 eV Total energy + Delta-G solvation = -3128.908077 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.36436 -39.73169 -36.92317 -35.27799 -34.39455 -32.47610 -31.04358 -29.83146 -28.99266 -28.05682 -25.21781 -23.18031 -22.06713 -21.44799 -20.52234 -19.90331 -18.76240 -17.95823 -16.73015 -16.30204 -15.68321 -15.37984 -14.95525 -14.61476 -14.42769 -14.14670 -13.83863 -13.34278 -13.08361 -12.96247 -12.58044 -12.22116 -12.05749 -11.73302 -11.55881 -11.41049 -11.28574 -10.82049 -10.46410 -10.20467 -9.75497 -9.43012 -9.26221 -9.02578 -8.79448 -8.25143 -8.16738 -7.24923 -6.24060 -4.27061 1.22595 1.71590 2.66254 2.93833 3.09863 3.22158 3.34543 3.39354 3.59085 4.10935 4.29354 4.66762 4.71941 4.89842 5.10718 5.11128 5.27793 5.53934 5.58418 5.71906 5.90625 6.14265 6.26718 6.31340 6.41522 6.52231 6.54034 6.71366 6.79586 6.82881 6.85897 7.02225 7.25695 7.30215 7.39253 7.44196 7.50024 8.22556 8.55050 8.73972 9.02362 9.36612 10.88025 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.036462 B = 0.003997 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.741033 B = 7003.631603 C = 7425.020461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.253 3.747 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.261 1.261 11 H -0.294 1.294 12 N -0.712 5.712 13 C 0.695 3.305 14 O -0.578 6.578 15 N -0.693 5.693 16 C 0.171 3.829 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.106 4.106 20 C -0.090 4.090 21 C -0.209 4.209 22 C 0.049 3.951 23 N -0.596 5.596 24 H 0.412 0.588 25 C 0.064 3.936 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.037 0.963 29 H 0.268 0.732 30 H 0.392 0.608 31 H 0.398 0.602 32 H 0.154 0.846 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.144 0.856 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.428 -2.284 20.941 21.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.150 3.850 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.185 1.185 11 H -0.221 1.221 12 N -0.363 5.363 13 C 0.396 3.604 14 O -0.456 6.456 15 N -0.339 5.339 16 C 0.073 3.927 17 C -0.142 4.142 18 C -0.136 4.136 19 C -0.126 4.126 20 C -0.095 4.095 21 C -0.234 4.234 22 C -0.078 4.078 23 N -0.199 5.199 24 H 0.248 0.752 25 C -0.044 4.044 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.225 0.775 31 H 0.231 0.769 32 H 0.171 0.829 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.162 0.838 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.122 -1.336 20.566 20.640 hybrid contribution -0.592 -0.728 -0.568 1.096 sum 0.530 -2.064 19.998 20.111 Atomic orbital electron populations 1.22481 0.99384 1.00806 0.99418 1.19038 0.89954 0.94479 0.81560 0.93155 1.21014 1.33393 1.14529 0.88485 0.90236 1.24818 0.95476 0.96739 0.95452 1.69865 1.44819 1.40124 0.98072 0.86869 0.80474 0.83566 0.77559 1.20294 1.18528 1.22096 1.45490 1.68727 1.13617 1.08465 1.16078 0.78491 0.85505 0.80346 1.90844 1.56536 1.14218 1.84030 1.42697 1.69949 1.10926 1.10337 1.16607 1.02591 0.92048 0.81409 1.21272 1.00320 0.91920 1.00735 1.20574 1.01569 0.99811 0.91688 1.20181 1.02329 0.92362 0.97700 1.19000 1.05102 0.93726 0.91666 1.21635 1.12040 0.91859 0.97898 1.21747 1.03791 0.99718 0.82521 1.41665 1.62895 1.08321 1.07005 0.75186 1.17958 1.07683 0.85208 0.93557 0.93357 0.92921 0.94439 0.92223 0.77518 0.76894 0.82894 0.85889 0.86350 0.83783 0.81495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 8.97 37.16 0.33 -3.29 16 2 C 0.25 5.98 2.15 -69.08 -0.15 5.83 16 3 H 0.05 1.31 6.63 -51.93 -0.34 0.97 16 4 C -0.54 -14.32 9.31 -34.44 -0.32 -14.64 16 5 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 8 Si 0.89 21.61 24.37 -169.99 -4.14 17.47 16 9 H -0.28 -6.53 6.87 56.52 0.39 -6.14 16 10 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 12 N -0.71 -13.91 5.07 -59.81 -0.30 -14.21 16 13 C 0.70 13.32 8.33 -86.92 -0.72 12.60 16 14 O -0.58 -13.05 13.18 5.29 0.07 -12.98 16 15 N -0.69 -10.35 5.38 -14.12 -0.08 -10.43 16 16 C 0.17 2.64 6.45 -83.52 -0.54 2.10 16 17 C -0.12 -1.96 8.71 -39.34 -0.34 -2.30 16 18 C -0.12 -1.60 9.97 -39.97 -0.40 -1.99 16 19 C -0.11 -1.34 10.05 -39.59 -0.40 -1.74 16 20 C -0.09 -1.18 6.37 -105.16 -0.67 -1.85 16 21 C -0.21 -2.15 11.08 -37.67 -0.42 -2.57 16 22 C 0.05 0.42 11.81 -16.76 -0.20 0.23 16 23 N -0.60 -5.93 6.07 -10.55 -0.06 -5.99 16 24 H 0.41 3.02 8.96 -40.82 -0.37 2.65 16 25 C 0.06 0.86 7.18 -83.80 -0.60 0.26 16 26 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.39 6.60 8.56 -40.82 -0.35 6.25 16 31 H 0.40 4.53 8.81 -40.82 -0.36 4.17 16 32 H 0.15 2.83 5.76 -52.49 -0.30 2.53 16 33 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 34 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 35 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 301.17 15.07 4.54 4.54 Total: -1.00 -33.09 301.17 -7.76 -40.84 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -4.03 Total: 11.45 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -4.52 Total: -5.25 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.33 Total: -56.06 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.07 Total: -12.98 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.14 Total: 17.47 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.09 -7.76 -40.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547851669.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.226 kcal (2) G-P(sol) polarization free energy of solvation -33.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds