Wall clock time and date at job start Mon Mar 30 2020 01:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47383 * 2 1 4 4 C 1.50705 * 109.46982 * 119.99868 * 2 1 3 5 5 H 1.08003 * 119.99470 * 114.44432 * 4 2 1 6 6 C 1.37875 * 120.00121 * 294.44274 * 4 2 1 7 7 N 1.31512 * 119.99997 * 159.09455 * 6 4 2 8 8 Si 1.86799 * 119.99906 * 339.36800 * 6 4 2 9 9 H 1.48503 * 109.47058 * 179.72399 * 8 6 4 10 10 H 1.48500 * 109.47231 * 299.72340 * 8 6 4 11 11 H 1.48499 * 109.47161 * 59.72614 * 8 6 4 12 12 N 1.46505 * 109.47182 * 239.99746 * 2 1 3 13 13 C 1.34776 * 119.99536 * 84.99926 * 12 2 1 14 14 O 1.21588 * 120.00200 * 0.02562 * 13 12 2 15 15 N 1.34777 * 119.99628 * 179.97438 * 13 12 2 16 16 C 1.40062 * 119.99847 * 184.91180 * 15 13 12 17 17 C 1.38378 * 120.17357 * 330.81579 * 16 15 13 18 18 C 1.38736 * 120.58243 * 180.02562 * 17 16 15 19 19 C 1.36646 * 120.58663 * 359.97438 * 18 17 16 20 20 C 1.39743 * 119.89884 * 0.02562 * 19 18 17 21 21 C 1.46488 * 133.98725 * 179.97438 * 20 19 18 22 22 C 1.34262 * 107.00973 * 180.02562 * 21 20 19 23 23 N 1.36765 * 109.91392 * 0.02562 * 22 21 20 24 24 H 0.97002 * 125.07363 * 180.02562 * 23 22 21 25 25 C 1.37794 * 109.84980 * 359.74071 * 23 22 21 26 26 H 1.09004 * 109.46843 * 53.25196 * 1 2 3 27 27 H 1.08998 * 109.47196 * 173.25254 * 1 2 3 28 28 H 1.09004 * 109.46992 * 293.25617 * 1 2 3 29 29 H 0.97004 * 119.99685 * 355.20020 * 7 6 4 30 30 H 0.97000 * 119.99993 * 264.99824 * 12 2 1 31 31 H 0.96994 * 120.00056 * 4.92453 * 15 13 12 32 32 H 1.07999 * 119.71108 * 359.97027 * 17 16 15 33 33 H 1.07997 * 119.70718 * 179.97438 * 18 17 16 34 34 H 1.08003 * 120.05145 * 180.02562 * 19 18 17 35 35 H 1.08000 * 126.49204 * 0.03915 * 21 20 19 36 36 H 1.08000 * 125.03724 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5772 -1.6379 1.1339 6 6 1.7963 -0.1763 2.4795 7 7 1.8495 -0.9460 3.5446 8 14 1.3933 1.6389 2.6582 9 1 1.1776 1.9593 4.0921 10 1 2.5212 2.4503 2.1340 11 1 0.1608 1.9502 1.8906 12 7 2.0184 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8583 1.1615 -2.4116 15 7 2.5968 -0.6535 -3.4574 16 6 2.8284 0.0665 -4.6362 17 6 2.0908 1.2042 -4.9126 18 6 2.3128 1.9236 -6.0779 19 6 3.2641 1.5215 -6.9727 20 6 4.0218 0.3758 -6.7160 21 6 5.0909 -0.3195 -7.4368 22 6 5.4404 -1.3811 -6.6928 23 7 4.6823 -1.4225 -5.5552 24 1 4.7528 -2.0980 -4.8627 25 6 3.8079 -0.3577 -5.5367 26 1 -0.3633 0.6149 -0.8235 27 1 -0.3633 -1.0205 -0.1207 28 1 -0.3633 0.4058 0.9442 29 1 1.9858 -1.9014 3.4462 30 1 2.2491 -1.6318 -1.1526 31 1 2.7599 -1.6094 -3.4330 32 1 1.3351 1.5346 -4.2154 33 1 1.7287 2.8093 -6.2796 34 1 3.4300 2.0883 -7.8770 35 1 5.5173 -0.0324 -8.3867 36 1 6.2065 -2.0961 -6.9539 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547851670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:06 Heat of formation + Delta-G solvation = 33.102960 kcal Electronic energy + Delta-G solvation = -20243.667454 eV Core-core repulsion = 17114.400272 eV Total energy + Delta-G solvation = -3129.267181 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.35958 -39.70703 -36.91471 -35.23112 -34.38131 -32.54553 -31.01032 -29.68422 -28.97065 -28.00698 -24.88258 -23.09255 -22.04361 -21.34660 -20.40871 -19.86854 -18.77104 -18.14058 -16.95707 -16.71269 -15.62815 -15.24163 -14.86710 -14.47346 -14.36024 -14.04599 -13.78712 -13.31449 -13.06945 -12.68449 -12.55010 -12.31481 -11.83982 -11.70381 -11.54334 -11.44307 -11.37690 -10.53198 -10.42713 -10.08936 -9.83098 -9.44162 -9.15708 -9.03658 -8.37627 -8.26593 -8.17418 -7.27855 -6.62965 -4.25393 1.21911 1.71198 2.66513 2.95233 3.10792 3.39083 3.45027 3.60159 3.61344 4.08283 4.41467 4.69730 4.72383 4.90117 5.10008 5.11765 5.27826 5.53775 5.57722 5.71766 5.90985 6.14625 6.31865 6.41246 6.51841 6.53906 6.64537 6.72024 6.81667 6.85773 6.88312 7.11117 7.30192 7.35305 7.41278 7.44121 7.74138 8.20410 8.55558 8.68874 9.05686 9.41696 10.76158 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031942 B = 0.004136 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.385073 B = 6768.076869 C = 7270.462609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.259 3.741 3 H 0.043 0.957 4 C -0.622 4.622 5 H 0.061 0.939 6 C 0.045 3.955 7 N -0.892 5.892 8 Si 1.035 2.965 9 H -0.283 1.283 10 H -0.280 1.280 11 H -0.272 1.272 12 N -0.713 5.713 13 C 0.694 3.306 14 O -0.580 6.580 15 N -0.694 5.694 16 C 0.167 3.833 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.103 4.103 20 C -0.092 4.092 21 C -0.208 4.208 22 C 0.049 3.951 23 N -0.595 5.595 24 H 0.412 0.588 25 C 0.066 3.934 26 H 0.030 0.970 27 H 0.042 0.958 28 H 0.061 0.939 29 H 0.270 0.730 30 H 0.389 0.611 31 H 0.397 0.603 32 H 0.156 0.844 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.145 0.855 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.262 -1.664 -20.366 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.155 3.845 3 H 0.060 0.940 4 C -0.660 4.660 5 H 0.079 0.921 6 C -0.163 4.163 7 N -0.524 5.524 8 Si 0.862 3.138 9 H -0.208 1.208 10 H -0.206 1.206 11 H -0.198 1.198 12 N -0.364 5.364 13 C 0.395 3.605 14 O -0.458 6.458 15 N -0.341 5.341 16 C 0.069 3.931 17 C -0.139 4.139 18 C -0.139 4.139 19 C -0.123 4.123 20 C -0.097 4.097 21 C -0.234 4.234 22 C -0.078 4.078 23 N -0.198 5.198 24 H 0.248 0.752 25 C -0.042 4.042 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.222 0.778 31 H 0.230 0.770 32 H 0.173 0.827 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.162 0.838 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.706 0.475 -19.041 19.404 hybrid contribution 0.716 -2.675 -0.744 2.867 sum 4.422 -2.200 -19.784 20.392 Atomic orbital electron populations 1.22483 0.98926 1.00002 1.00344 1.18942 0.90383 0.93991 0.81177 0.93967 1.22028 1.41814 1.11213 0.90957 0.92056 1.25653 0.93192 1.05826 0.91590 1.70875 1.43352 1.06819 1.31394 0.84176 0.77842 0.75502 0.76285 1.20833 1.20589 1.19754 1.45602 1.68713 1.13437 1.08669 1.16133 0.78758 0.85379 0.80239 1.90816 1.56563 1.14316 1.84063 1.42681 1.70858 1.10828 1.09744 1.16617 0.95130 0.95880 0.85453 1.21361 1.00330 0.94574 0.97642 1.20591 0.99018 1.00273 0.94067 1.20193 0.96563 0.95678 0.99853 1.19008 0.99336 0.96973 0.94379 1.21638 1.01703 0.98145 1.01915 1.21756 0.98012 1.00621 0.87413 1.41680 1.32889 1.24571 1.20708 0.75161 1.18020 0.95267 0.92350 0.98545 0.95040 0.93848 0.92050 0.92017 0.77816 0.76961 0.82704 0.85889 0.86339 0.83766 0.81487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 9.18 37.16 0.34 -3.24 16 2 C 0.26 6.19 2.15 -69.08 -0.15 6.04 16 3 H 0.04 1.10 6.19 -51.93 -0.32 0.78 16 4 C -0.62 -16.68 8.97 -34.44 -0.31 -16.99 16 5 H 0.06 1.71 7.96 -52.48 -0.42 1.29 16 6 C 0.04 1.25 5.24 -17.82 -0.09 1.15 16 7 N -0.89 -26.27 13.70 55.43 0.76 -25.51 16 8 Si 1.03 24.94 26.37 -169.99 -4.48 20.46 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.15 5.96 56.52 0.34 -5.81 16 12 N -0.71 -14.31 5.07 -59.81 -0.30 -14.62 16 13 C 0.69 13.58 8.40 -86.92 -0.73 12.84 16 14 O -0.58 -13.20 13.09 5.29 0.07 -13.13 16 15 N -0.69 -10.59 5.37 -14.12 -0.08 -10.67 16 16 C 0.17 2.61 6.42 -83.52 -0.54 2.07 16 17 C -0.12 -1.90 8.75 -39.35 -0.34 -2.24 16 18 C -0.12 -1.63 9.97 -39.97 -0.40 -2.03 16 19 C -0.10 -1.31 10.05 -39.59 -0.40 -1.71 16 20 C -0.09 -1.22 6.37 -105.15 -0.67 -1.89 16 21 C -0.21 -2.20 11.08 -37.66 -0.42 -2.61 16 22 C 0.05 0.44 11.82 -16.75 -0.20 0.24 16 23 N -0.60 -6.18 6.07 -10.55 -0.06 -6.24 16 24 H 0.41 3.26 8.96 -40.82 -0.37 2.89 16 25 C 0.07 0.91 7.19 -83.80 -0.60 0.31 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.42 5.20 -51.93 -0.27 1.15 16 29 H 0.27 7.84 8.73 -40.82 -0.36 7.48 16 30 H 0.39 6.81 8.54 -40.82 -0.35 6.46 16 31 H 0.40 4.67 8.82 -40.82 -0.36 4.31 16 32 H 0.16 2.83 5.74 -52.49 -0.30 2.53 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 35 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 304.09 15.07 4.58 4.58 Total: -1.00 -32.87 304.09 -8.16 -41.03 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -4.14 Total: 12.14 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -4.50 Total: -8.05 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.32 Total: -57.04 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.07 Total: -13.13 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -4.48 Total: 20.46 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.87 -8.16 -41.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547851670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.134 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds