Wall clock time and date at job start Mon Mar 30 2020 01:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47383 * 2 1 4 4 C 1.50705 * 109.46982 * 119.99868 * 2 1 3 5 5 H 1.08003 * 119.99470 * 114.44432 * 4 2 1 6 6 C 1.37875 * 120.00121 * 294.44274 * 4 2 1 7 7 N 1.31512 * 119.99997 * 159.09455 * 6 4 2 8 8 Si 1.86799 * 119.99906 * 339.36800 * 6 4 2 9 9 H 1.48503 * 109.47058 * 179.72399 * 8 6 4 10 10 H 1.48500 * 109.47231 * 299.72340 * 8 6 4 11 11 H 1.48499 * 109.47161 * 59.72614 * 8 6 4 12 12 N 1.46505 * 109.47182 * 239.99746 * 2 1 3 13 13 C 1.34776 * 119.99536 * 84.99926 * 12 2 1 14 14 O 1.21588 * 120.00200 * 0.02562 * 13 12 2 15 15 N 1.34777 * 119.99628 * 179.97438 * 13 12 2 16 16 C 1.40062 * 119.99847 * 184.91180 * 15 13 12 17 17 C 1.38378 * 120.17357 * 330.81579 * 16 15 13 18 18 C 1.38736 * 120.58243 * 180.02562 * 17 16 15 19 19 C 1.36646 * 120.58663 * 359.97438 * 18 17 16 20 20 C 1.39743 * 119.89884 * 0.02562 * 19 18 17 21 21 C 1.46488 * 133.98725 * 179.97438 * 20 19 18 22 22 C 1.34262 * 107.00973 * 180.02562 * 21 20 19 23 23 N 1.36765 * 109.91392 * 0.02562 * 22 21 20 24 24 H 0.97002 * 125.07363 * 180.02562 * 23 22 21 25 25 C 1.37794 * 109.84980 * 359.74071 * 23 22 21 26 26 H 1.09004 * 109.46843 * 53.25196 * 1 2 3 27 27 H 1.08998 * 109.47196 * 173.25254 * 1 2 3 28 28 H 1.09004 * 109.46992 * 293.25617 * 1 2 3 29 29 H 0.97004 * 119.99685 * 355.20020 * 7 6 4 30 30 H 0.97000 * 119.99993 * 264.99824 * 12 2 1 31 31 H 0.96994 * 120.00056 * 4.92453 * 15 13 12 32 32 H 1.07999 * 119.71108 * 359.97027 * 17 16 15 33 33 H 1.07997 * 119.70718 * 179.97438 * 18 17 16 34 34 H 1.08003 * 120.05145 * 180.02562 * 19 18 17 35 35 H 1.08000 * 126.49204 * 0.03915 * 21 20 19 36 36 H 1.08000 * 125.03724 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5772 -1.6379 1.1339 6 6 1.7963 -0.1763 2.4795 7 7 1.8495 -0.9460 3.5446 8 14 1.3933 1.6389 2.6582 9 1 1.1776 1.9593 4.0921 10 1 2.5212 2.4503 2.1340 11 1 0.1608 1.9502 1.8906 12 7 2.0184 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8583 1.1615 -2.4116 15 7 2.5968 -0.6535 -3.4574 16 6 2.8284 0.0665 -4.6362 17 6 2.0908 1.2042 -4.9126 18 6 2.3128 1.9236 -6.0779 19 6 3.2641 1.5215 -6.9727 20 6 4.0218 0.3758 -6.7160 21 6 5.0909 -0.3195 -7.4368 22 6 5.4404 -1.3811 -6.6928 23 7 4.6823 -1.4225 -5.5552 24 1 4.7528 -2.0980 -4.8627 25 6 3.8079 -0.3577 -5.5367 26 1 -0.3633 0.6149 -0.8235 27 1 -0.3633 -1.0205 -0.1207 28 1 -0.3633 0.4058 0.9442 29 1 1.9858 -1.9014 3.4462 30 1 2.2491 -1.6318 -1.1526 31 1 2.7599 -1.6094 -3.4330 32 1 1.3351 1.5346 -4.2154 33 1 1.7287 2.8093 -6.2796 34 1 3.4300 2.0883 -7.8770 35 1 5.5173 -0.0324 -8.3867 36 1 6.2065 -2.0961 -6.9539 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547851670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:05 Heat of formation + Delta-G solvation = 9.768481 kcal Electronic energy + Delta-G solvation = -20244.679313 eV Core-core repulsion = 17114.400272 eV Total energy + Delta-G solvation = -3130.279040 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.35204 -41.11957 -38.09274 -36.84654 -35.79723 -34.52123 -32.24574 -31.11193 -29.98733 -29.13036 -26.90513 -24.38512 -23.10312 -22.64763 -21.73312 -21.25669 -20.22773 -19.63023 -18.57996 -17.81190 -16.95488 -16.51041 -16.25152 -15.83769 -15.55034 -15.33424 -15.18276 -14.80167 -14.54426 -14.32568 -13.89192 -13.64758 -13.46607 -13.36375 -12.81180 -12.53242 -12.46738 -12.44063 -12.00015 -11.73651 -11.60562 -11.20110 -10.96592 -10.51017 -10.19436 -9.86173 -9.14890 -8.83152 -8.30718 -6.45511 0.19858 0.67773 1.46975 1.50015 1.60257 1.72290 1.80906 2.14773 2.23933 2.41838 2.95296 3.00571 3.26508 3.88374 4.12984 4.15249 4.32587 4.46344 4.57271 4.67304 4.71947 4.76241 4.80837 5.00667 5.04653 5.10138 5.35690 5.42651 5.49060 5.57314 5.59753 5.77268 5.83233 5.87847 5.99214 6.08305 6.26639 6.50294 6.67760 7.06021 7.25401 7.52964 8.55793 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031942 B = 0.004136 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.385073 B = 6768.076869 C = 7270.462609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.263 3.737 3 H 0.023 0.977 4 C -0.618 4.618 5 H 0.043 0.957 6 C 0.003 3.997 7 N -0.921 5.921 8 Si 1.066 2.934 9 H -0.280 1.280 10 H -0.276 1.276 11 H -0.250 1.250 12 N -0.712 5.712 13 C 0.695 3.305 14 O -0.613 6.613 15 N -0.675 5.675 16 C 0.145 3.855 17 C -0.142 4.142 18 C -0.130 4.130 19 C -0.099 4.099 20 C -0.110 4.110 21 C -0.225 4.225 22 C 0.066 3.934 23 N -0.590 5.590 24 H 0.424 0.576 25 C 0.052 3.948 26 H 0.038 0.962 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.261 0.739 30 H 0.402 0.598 31 H 0.414 0.586 32 H 0.128 0.872 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.169 0.831 36 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.371 -1.981 -22.812 23.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.158 3.842 3 H 0.041 0.959 4 C -0.656 4.656 5 H 0.061 0.939 6 C -0.199 4.199 7 N -0.555 5.555 8 Si 0.888 3.112 9 H -0.206 1.206 10 H -0.202 1.202 11 H -0.174 1.174 12 N -0.365 5.365 13 C 0.395 3.605 14 O -0.494 6.494 15 N -0.323 5.323 16 C 0.048 3.952 17 C -0.165 4.165 18 C -0.150 4.150 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.249 4.249 22 C -0.061 4.061 23 N -0.194 5.194 24 H 0.262 0.738 25 C -0.057 4.057 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.236 0.764 31 H 0.250 0.750 32 H 0.145 0.855 33 H 0.158 0.842 34 H 0.164 0.836 35 H 0.186 0.814 36 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 4.837 0.097 -21.535 22.072 hybrid contribution 0.489 -2.666 -0.139 2.713 sum 5.325 -2.569 -21.674 22.466 Atomic orbital electron populations 1.22355 0.97624 1.00714 1.00277 1.18641 0.91258 0.92803 0.81503 0.95909 1.22175 1.40827 1.10416 0.92207 0.93894 1.26716 0.92953 1.08554 0.91661 1.70966 1.45801 1.06492 1.32247 0.83762 0.78821 0.71879 0.76692 1.20565 1.20161 1.17405 1.45277 1.69163 1.13931 1.08085 1.16174 0.78610 0.84935 0.80760 1.90806 1.57908 1.15943 1.84723 1.42339 1.69787 1.11565 1.08627 1.16740 0.96425 0.96347 0.85738 1.21272 1.00782 0.95875 0.98527 1.20769 0.99857 1.00782 0.93555 1.20534 0.95440 0.95563 1.00260 1.19527 1.00139 0.97197 0.94691 1.22006 1.01318 0.98449 1.03168 1.22515 0.97329 1.00463 0.85797 1.41814 1.32150 1.23870 1.21578 0.73832 1.18022 0.95594 0.93723 0.98388 0.94287 0.92946 0.92674 0.93003 0.76380 0.74981 0.85479 0.84236 0.83576 0.81389 0.77104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.69 9.18 71.98 0.66 -6.03 16 2 C 0.26 12.56 2.15 44.25 0.10 12.66 16 3 H 0.02 1.20 6.19 -2.39 -0.01 1.19 16 4 C -0.62 -33.37 8.97 25.60 0.23 -33.14 16 5 H 0.04 2.43 7.96 -2.91 -0.02 2.41 16 6 C 0.00 0.18 5.24 84.65 0.44 0.62 16 7 N -0.92 -54.92 13.70 21.45 0.29 -54.63 16 8 Si 1.07 50.16 26.37 68.60 1.81 51.96 16 9 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.25 -10.79 5.96 99.48 0.59 -10.20 16 12 N -0.71 -28.45 5.07 -461.39 -2.34 -30.79 16 13 C 0.69 27.25 8.40 179.05 1.50 28.76 16 14 O -0.61 -28.50 13.09 -3.99 -0.05 -28.55 16 15 N -0.68 -20.37 5.37 -316.86 -1.70 -22.07 16 16 C 0.14 4.48 6.42 38.20 0.25 4.73 16 17 C -0.14 -4.73 8.75 22.42 0.20 -4.53 16 18 C -0.13 -3.50 9.97 22.02 0.22 -3.28 16 19 C -0.10 -2.34 10.05 22.26 0.22 -2.11 16 20 C -0.11 -2.69 6.37 -20.21 -0.13 -2.82 16 21 C -0.22 -3.93 11.08 23.51 0.26 -3.67 16 22 C 0.07 0.90 11.82 83.02 0.98 1.89 16 23 N -0.59 -10.55 6.07 -187.28 -1.14 -11.69 16 24 H 0.42 5.47 8.96 -92.71 -0.83 4.64 16 25 C 0.05 1.34 7.19 39.10 0.28 1.62 16 26 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.05 2.48 5.20 -2.39 -0.01 2.47 16 29 H 0.26 15.50 8.73 -92.71 -0.81 14.69 16 30 H 0.40 13.86 8.54 -92.71 -0.79 13.06 16 31 H 0.41 9.31 8.82 -92.71 -0.82 8.49 16 32 H 0.13 4.89 5.74 -2.91 -0.02 4.88 16 33 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 34 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.21 0.96 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -72.06 304.09 0.64 -71.42 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: -1.44 Total: 29.65 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 5.21 Total: -5.30 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -4.89 Total: -119.19 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.05 Total: -28.55 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 1.81 Total: 51.96 kcal Total: -72.06 0.64 -71.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547851670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.187 kcal (2) G-P(sol) polarization free energy of solvation -72.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds