Wall clock time and date at job start Mon Mar 30 2020 01:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46822 * 2 1 4 4 N 1.46496 * 109.47024 * 180.02562 * 3 2 1 5 5 C 1.36658 * 119.99950 * 83.74367 * 4 3 2 6 6 H 1.08007 * 119.99946 * 170.44566 * 5 4 3 7 7 C 1.39193 * 120.00236 * 350.43839 * 5 4 3 8 8 N 1.31264 * 119.99870 * 1.74301 * 7 5 4 9 9 Si 1.86794 * 120.00310 * 181.74073 * 7 5 4 10 10 H 1.48497 * 109.47244 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47125 * 120.00084 * 9 7 5 12 12 H 1.48499 * 109.47369 * 240.00112 * 9 7 5 13 13 C 1.34776 * 120.00280 * 263.73951 * 4 3 2 14 14 O 1.21575 * 120.00338 * 184.70525 * 13 4 3 15 15 C 1.47989 * 119.99698 * 4.70443 * 13 4 3 16 16 N 1.32878 * 119.57081 * 281.34349 * 15 13 4 17 17 C 1.31323 * 121.78804 * 180.02562 * 16 15 13 18 18 C 1.39921 * 120.70871 * 0.02562 * 17 16 15 19 19 C 1.43198 * 120.46359 * 179.97438 * 18 17 16 20 20 N 7.29471 * 84.06096 * 75.09223 * 2 1 3 21 21 C 1.40016 * 119.07643 * 359.73325 * 18 17 16 22 22 C 1.38304 * 118.36342 * 0.50744 * 21 18 17 23 23 C 1.50699 * 120.39910 * 179.76699 * 22 21 18 24 24 H 1.09000 * 109.46517 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46997 * 299.99874 * 1 2 3 26 26 H 1.08997 * 109.47028 * 60.00034 * 1 2 3 27 27 H 1.08997 * 109.47519 * 240.00108 * 2 1 3 28 28 H 1.09003 * 109.47429 * 119.99762 * 2 1 3 29 29 H 1.08998 * 109.47232 * 60.00269 * 3 2 1 30 30 H 1.09003 * 109.46925 * 300.00071 * 3 2 1 31 31 H 0.97004 * 120.00452 * 180.02562 * 8 7 5 32 32 H 1.07997 * 119.64685 * 180.02562 * 17 16 15 33 33 H 1.07999 * 120.81575 * 180.26869 * 21 18 17 34 34 H 1.09005 * 109.46778 * 264.37341 * 23 22 21 35 35 H 1.08999 * 109.47503 * 144.37229 * 23 22 21 36 36 H 1.09007 * 109.46998 * 24.37060 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1877 1.3138 -1.1774 6 1 5.2565 1.4675 -1.2012 7 6 3.5058 0.9845 -2.3453 8 7 2.2023 0.8312 -2.3232 9 14 4.4455 0.7607 -3.9441 10 1 5.8933 0.9865 -3.7031 11 1 4.2379 -0.6195 -4.4512 12 1 3.9524 1.7366 -4.9489 13 6 4.1793 1.5697 1.1593 14 8 5.3920 1.6558 1.1512 15 6 3.4437 1.6046 2.4429 16 7 2.8406 2.7260 2.8229 17 6 2.1765 2.8056 3.9530 18 6 2.0809 1.6999 4.8051 19 6 1.3559 1.7927 6.0365 20 7 0.7752 1.8666 7.0113 21 6 2.6998 0.4998 4.4346 22 6 3.3935 0.4602 3.2387 23 6 4.0813 -0.8061 2.7977 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.7271 0.6013 -3.1370 32 1 1.6989 3.7345 4.2277 33 1 2.6403 -0.3722 5.0689 34 1 5.1303 -0.7710 3.0919 35 1 4.0108 -0.8995 1.7140 36 1 3.6004 -1.6636 3.2684 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000559147031.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:41 Heat of formation + Delta-G solvation = 43.845048 kcal Electronic energy + Delta-G solvation = -21070.085356 eV Core-core repulsion = 17941.283986 eV Total energy + Delta-G solvation = -3128.801370 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.51073 -38.31737 -36.57700 -35.49515 -33.61743 -32.44728 -31.91827 -31.42277 -27.46649 -26.19564 -25.35385 -23.90575 -22.65527 -20.72836 -20.05973 -18.41277 -17.29384 -16.86270 -16.72022 -15.40700 -14.59308 -14.21557 -14.02912 -13.80102 -13.75135 -13.64028 -13.29464 -13.15754 -12.96959 -12.87140 -12.48664 -12.40202 -12.13561 -11.79592 -11.66750 -11.36967 -11.10533 -10.73263 -10.44952 -10.38394 -10.20503 -9.91327 -9.68049 -9.58823 -8.89130 -8.84427 -8.53816 -7.83939 -6.33035 -3.95673 0.55549 1.26155 2.53051 2.88676 3.05421 3.19426 3.25833 3.53088 3.75023 3.85419 3.99143 4.38249 4.66444 4.73081 4.96122 5.08777 5.16373 5.30777 5.60632 5.71504 5.88600 5.91623 5.97992 6.02243 6.18689 6.29196 6.32118 6.40216 6.61980 6.69655 6.87615 6.94855 7.29619 7.34407 7.52710 7.69270 7.92946 7.97833 8.38085 9.01135 9.26422 9.78356 10.51695 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026006 B = 0.005687 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.395731 B = 4922.046813 C = 5333.371374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.119 4.119 3 C 0.121 3.879 4 N -0.415 5.415 5 C -0.295 4.295 6 H 0.108 0.892 7 C 0.026 3.974 8 N -0.866 5.866 9 Si 0.933 3.067 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.479 3.521 14 O -0.580 6.580 15 C 0.169 3.831 16 N -0.457 5.457 17 C 0.147 3.853 18 C -0.093 4.093 19 C 0.268 3.732 20 N -0.424 5.424 21 C -0.030 4.030 22 C -0.107 4.107 23 C -0.112 4.112 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.056 0.944 27 H 0.101 0.899 28 H 0.022 0.978 29 H 0.032 0.968 30 H 0.121 0.879 31 H 0.267 0.733 32 H 0.165 0.835 33 H 0.144 0.856 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.310 -2.754 6.240 7.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.157 4.157 3 C -0.002 4.002 4 N -0.130 5.130 5 C -0.423 4.423 6 H 0.126 0.874 7 C -0.176 4.176 8 N -0.507 5.507 9 Si 0.760 3.240 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.206 1.206 13 C 0.266 3.734 14 O -0.465 6.465 15 C 0.029 3.971 16 N -0.166 5.166 17 C -0.016 4.016 18 C -0.099 4.099 19 C -0.048 4.048 20 N -0.099 5.099 21 C -0.057 4.057 22 C -0.110 4.110 23 C -0.169 4.169 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.119 0.881 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.139 0.861 31 H 0.078 0.922 32 H 0.182 0.818 33 H 0.162 0.838 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.696 -1.908 6.973 8.119 hybrid contribution 0.232 -0.815 -0.434 0.952 sum -3.464 -2.723 6.538 7.884 Atomic orbital electron populations 1.21562 0.97393 0.99745 1.00550 1.22002 0.94056 0.98166 1.01470 1.21912 0.79459 0.97316 1.01562 1.43680 1.06155 1.58629 1.04575 1.19907 0.94555 1.43965 0.83848 0.87440 1.25362 0.95897 0.96459 0.99870 1.70102 1.06451 1.45973 1.28190 0.85729 0.79788 0.77919 0.80569 1.19163 1.20596 1.20630 1.17349 0.86792 0.87189 0.82105 1.90661 1.12824 1.57384 1.85666 1.21887 0.90852 0.88234 0.96105 1.68009 1.07240 1.26120 1.15231 1.22957 0.93506 0.96829 0.88327 1.17046 1.03860 0.97433 0.91596 1.25479 0.93052 0.93675 0.92572 1.81286 1.09860 1.07583 1.11219 1.21420 0.92969 0.96361 0.94998 1.20782 0.98696 0.97203 0.94346 1.20794 1.00306 0.92330 1.03453 0.94353 0.94836 0.92443 0.88061 0.95944 0.94996 0.86122 0.92156 0.81783 0.83786 0.90137 0.89861 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 9.91 37.16 0.37 -1.89 16 2 C -0.12 -2.35 5.49 -26.73 -0.15 -2.50 16 3 C 0.12 2.62 4.56 -4.04 -0.02 2.60 16 4 N -0.42 -10.03 2.63 -115.85 -0.30 -10.34 16 5 C -0.29 -7.56 9.51 -15.05 -0.14 -7.71 16 6 H 0.11 2.92 7.18 -52.48 -0.38 2.54 16 7 C 0.03 0.63 5.27 -17.44 -0.09 0.54 16 8 N -0.87 -20.06 7.18 55.51 0.40 -19.67 16 9 Si 0.93 19.17 29.55 -169.99 -5.02 14.15 16 10 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 12 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 13 C 0.48 11.36 5.78 -12.26 -0.07 11.29 16 14 O -0.58 -15.60 16.70 5.30 0.09 -15.51 16 15 C 0.17 3.27 4.97 -82.96 -0.41 2.86 16 16 N -0.46 -8.21 9.43 -9.48 -0.09 -8.30 16 17 C 0.15 2.02 10.92 -17.14 -0.19 1.83 16 18 C -0.09 -1.18 5.75 -106.68 -0.61 -1.79 16 19 C 0.27 3.38 15.37 -22.44 -0.34 3.04 16 20 N -0.42 -6.04 18.54 41.88 0.78 -5.26 16 21 C -0.03 -0.37 9.55 -38.89 -0.37 -0.74 16 22 C -0.11 -1.69 5.92 -104.14 -0.62 -2.31 16 23 C -0.11 -1.62 9.54 36.01 0.34 -1.28 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.10 2.26 5.88 -51.93 -0.31 1.95 16 28 H 0.02 0.42 7.78 -51.93 -0.40 0.02 16 29 H 0.03 0.66 6.12 -51.93 -0.32 0.34 16 30 H 0.12 2.85 5.89 -51.93 -0.31 2.55 16 31 H 0.27 5.90 8.31 -40.82 -0.34 5.56 16 32 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.44 6.92 -51.93 -0.36 1.08 16 36 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 LS Contribution 312.73 15.07 4.71 4.71 Total: -1.00 -28.06 312.73 -5.91 -33.97 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -4.16 Total: 2.32 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -2.31 Total: 3.94 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.78 Total: -43.57 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.09 Total: -15.51 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.06 -5.91 -33.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559147031.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.813 kcal (2) G-P(sol) polarization free energy of solvation -28.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds