Wall clock time and date at job start Mon Mar 30 2020 01:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46822 * 2 1 4 4 N 1.46496 * 109.47024 * 180.02562 * 3 2 1 5 5 C 1.36658 * 119.99950 * 83.74367 * 4 3 2 6 6 H 1.08007 * 119.99946 * 170.44566 * 5 4 3 7 7 C 1.39193 * 120.00236 * 350.43839 * 5 4 3 8 8 N 1.31264 * 119.99870 * 1.74301 * 7 5 4 9 9 Si 1.86794 * 120.00310 * 181.74073 * 7 5 4 10 10 H 1.48497 * 109.47244 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47125 * 120.00084 * 9 7 5 12 12 H 1.48499 * 109.47369 * 240.00112 * 9 7 5 13 13 C 1.34776 * 120.00280 * 263.73951 * 4 3 2 14 14 O 1.21575 * 120.00338 * 184.70525 * 13 4 3 15 15 C 1.47989 * 119.99698 * 4.70443 * 13 4 3 16 16 N 1.32878 * 119.57081 * 281.34349 * 15 13 4 17 17 C 1.31323 * 121.78804 * 180.02562 * 16 15 13 18 18 C 1.39921 * 120.70871 * 0.02562 * 17 16 15 19 19 C 1.43198 * 120.46359 * 179.97438 * 18 17 16 20 20 N 7.29471 * 84.06096 * 75.09223 * 2 1 3 21 21 C 1.40016 * 119.07643 * 359.73325 * 18 17 16 22 22 C 1.38304 * 118.36342 * 0.50744 * 21 18 17 23 23 C 1.50699 * 120.39910 * 179.76699 * 22 21 18 24 24 H 1.09000 * 109.46517 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46997 * 299.99874 * 1 2 3 26 26 H 1.08997 * 109.47028 * 60.00034 * 1 2 3 27 27 H 1.08997 * 109.47519 * 240.00108 * 2 1 3 28 28 H 1.09003 * 109.47429 * 119.99762 * 2 1 3 29 29 H 1.08998 * 109.47232 * 60.00269 * 3 2 1 30 30 H 1.09003 * 109.46925 * 300.00071 * 3 2 1 31 31 H 0.97004 * 120.00452 * 180.02562 * 8 7 5 32 32 H 1.07997 * 119.64685 * 180.02562 * 17 16 15 33 33 H 1.07999 * 120.81575 * 180.26869 * 21 18 17 34 34 H 1.09005 * 109.46778 * 264.37341 * 23 22 21 35 35 H 1.08999 * 109.47503 * 144.37229 * 23 22 21 36 36 H 1.09007 * 109.46998 * 24.37060 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1877 1.3138 -1.1774 6 1 5.2565 1.4675 -1.2012 7 6 3.5058 0.9845 -2.3453 8 7 2.2023 0.8312 -2.3232 9 14 4.4455 0.7607 -3.9441 10 1 5.8933 0.9865 -3.7031 11 1 4.2379 -0.6195 -4.4512 12 1 3.9524 1.7366 -4.9489 13 6 4.1793 1.5697 1.1593 14 8 5.3920 1.6558 1.1512 15 6 3.4437 1.6046 2.4429 16 7 2.8406 2.7260 2.8229 17 6 2.1765 2.8056 3.9530 18 6 2.0809 1.6999 4.8051 19 6 1.3559 1.7927 6.0365 20 7 0.7752 1.8666 7.0113 21 6 2.6998 0.4998 4.4346 22 6 3.3935 0.4602 3.2387 23 6 4.0813 -0.8061 2.7977 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.7271 0.6013 -3.1370 32 1 1.6989 3.7345 4.2277 33 1 2.6403 -0.3722 5.0689 34 1 5.1303 -0.7710 3.0919 35 1 4.0108 -0.8995 1.7140 36 1 3.6004 -1.6636 3.2684 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000559147031.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:40 Heat of formation + Delta-G solvation = 27.945200 kcal Electronic energy + Delta-G solvation = -21070.774825 eV Core-core repulsion = 17941.283986 eV Total energy + Delta-G solvation = -3129.490839 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.83200 -39.96331 -37.70781 -37.30202 -34.80958 -34.04015 -33.39582 -33.04116 -28.75042 -27.77615 -26.84252 -25.46685 -23.81026 -22.31387 -21.66364 -19.52425 -19.05723 -18.48043 -18.04235 -17.08513 -16.12484 -15.60735 -15.50264 -15.34825 -15.25921 -14.90870 -14.50248 -14.45506 -14.29282 -14.01048 -13.82423 -13.63376 -13.53272 -13.41935 -13.10605 -12.81808 -12.74100 -12.35718 -12.19409 -12.06726 -11.88279 -11.55182 -10.97251 -10.84231 -10.65183 -10.37719 -9.93561 -9.65819 -8.16586 -5.88436 -0.62738 0.15451 1.36085 1.47373 1.50320 1.59126 1.75070 1.90548 2.26411 2.61240 2.72165 2.88482 3.09594 3.49351 3.67826 3.74997 3.92525 4.01819 4.41764 4.45182 4.57494 4.60914 4.73232 4.73828 4.85072 4.91509 5.07366 5.11642 5.21104 5.33416 5.40763 5.43810 5.49978 5.71516 5.99131 6.08985 6.31746 6.53277 6.76031 7.14393 7.43424 7.96161 8.65858 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026006 B = 0.005687 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.395731 B = 4922.046813 C = 5333.371374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.109 4.109 3 C 0.129 3.871 4 N -0.425 5.425 5 C -0.339 4.339 6 H 0.077 0.923 7 C 0.005 3.995 8 N -0.863 5.863 9 Si 0.991 3.009 10 H -0.280 1.280 11 H -0.269 1.269 12 H -0.272 1.272 13 C 0.472 3.528 14 O -0.630 6.630 15 C 0.137 3.863 16 N -0.488 5.488 17 C 0.150 3.850 18 C -0.073 4.073 19 C 0.292 3.708 20 N -0.442 5.442 21 C -0.006 4.006 22 C -0.111 4.111 23 C -0.109 4.109 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.028 0.972 29 H 0.042 0.958 30 H 0.099 0.901 31 H 0.274 0.726 32 H 0.197 0.803 33 H 0.188 0.812 34 H 0.077 0.923 35 H 0.046 0.954 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.322 -3.774 7.887 10.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.148 4.148 3 C 0.006 3.994 4 N -0.140 5.140 5 C -0.467 4.467 6 H 0.095 0.905 7 C -0.198 4.198 8 N -0.502 5.502 9 Si 0.815 3.185 10 H -0.205 1.205 11 H -0.194 1.194 12 H -0.197 1.197 13 C 0.260 3.740 14 O -0.519 6.519 15 C -0.001 4.001 16 N -0.198 5.198 17 C -0.013 4.013 18 C -0.078 4.078 19 C -0.024 4.024 20 N -0.118 5.118 21 C -0.034 4.034 22 C -0.114 4.114 23 C -0.166 4.166 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.213 0.787 33 H 0.206 0.794 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.759 -2.935 8.615 10.770 hybrid contribution 0.801 -0.459 -0.855 1.258 sum -4.958 -3.393 7.760 9.814 Atomic orbital electron populations 1.21474 0.94766 1.01150 1.00921 1.21823 0.96176 0.96380 1.00377 1.21842 0.78208 0.98533 1.00791 1.43857 1.07063 1.58466 1.04571 1.19746 0.93739 1.47452 0.85753 0.90514 1.25945 0.96798 0.95404 1.01626 1.70192 1.06713 1.44302 1.29017 0.84903 0.77953 0.78343 0.77303 1.20459 1.19418 1.19708 1.18020 0.86608 0.85758 0.83581 1.90591 1.15147 1.59233 1.86933 1.21271 0.93295 0.90433 0.95107 1.67855 1.08460 1.26056 1.17400 1.23421 0.92348 0.98485 0.86997 1.16987 1.02729 0.97117 0.91015 1.25108 0.92374 0.92961 0.91924 1.81347 1.10385 1.08248 1.11809 1.21784 0.90348 0.97628 0.93602 1.20863 0.99251 0.96258 0.95059 1.20794 1.00749 0.93626 1.01431 0.92404 0.93301 0.93201 0.90772 0.95329 0.94007 0.88335 0.91533 0.78652 0.79439 0.90405 0.93482 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 9.91 71.98 0.71 -3.25 16 2 C -0.11 -4.30 5.49 30.60 0.17 -4.13 16 3 C 0.13 5.70 4.56 86.38 0.39 6.10 16 4 N -0.43 -21.60 2.63 -638.70 -1.68 -23.28 16 5 C -0.34 -18.47 9.51 84.17 0.80 -17.67 16 6 H 0.08 4.54 7.18 -2.91 -0.02 4.52 16 7 C 0.01 0.24 5.27 85.01 0.45 0.69 16 8 N -0.86 -40.50 7.18 21.70 0.16 -40.34 16 9 Si 0.99 40.13 29.55 68.60 2.03 42.16 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 12 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 13 C 0.47 23.58 5.78 86.83 0.50 24.09 16 14 O -0.63 -36.31 16.70 -3.95 -0.07 -36.37 16 15 C 0.14 5.33 4.97 41.87 0.21 5.54 16 16 N -0.49 -17.25 9.43 -183.90 -1.73 -18.99 16 17 C 0.15 3.75 10.92 85.18 0.93 4.68 16 18 C -0.07 -1.56 5.75 -21.19 -0.12 -1.68 16 19 C 0.29 6.15 15.37 88.32 1.36 7.50 16 20 N -0.44 -10.98 18.54 19.02 0.35 -10.63 16 21 C -0.01 -0.13 9.55 22.72 0.22 0.09 16 22 C -0.11 -3.32 5.92 -19.55 -0.12 -3.44 16 23 C -0.11 -3.06 9.54 71.24 0.68 -2.38 16 24 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.07 3.34 5.88 -2.39 -0.01 3.33 16 28 H 0.03 1.07 7.78 -2.39 -0.02 1.05 16 29 H 0.04 1.74 6.12 -2.39 -0.01 1.73 16 30 H 0.10 4.78 5.89 -2.39 -0.01 4.77 16 31 H 0.27 11.99 8.31 -92.71 -0.77 11.22 16 32 H 0.20 3.48 8.06 -2.91 -0.02 3.46 16 33 H 0.19 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 35 H 0.05 1.67 6.92 -2.39 -0.02 1.65 16 36 H 0.11 2.09 8.06 -2.38 -0.02 2.07 16 Total: -1.00 -65.49 312.73 6.35 -59.15 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 1.11 Total: 12.17 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 6.18 Total: 16.14 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -2.90 Total: -93.24 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -0.07 Total: -36.37 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -65.49 6.35 -59.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559147031.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.091 kcal (2) G-P(sol) polarization free energy of solvation -65.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds