Wall clock time and date at job start Mon Mar 30 2020 02:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99751 * 2 1 4 4 H 1.48504 * 109.47358 * 270.00171 * 3 2 1 5 5 H 1.48495 * 109.47128 * 30.00301 * 3 2 1 6 6 H 1.48503 * 109.47097 * 150.00275 * 3 2 1 7 7 C 1.37876 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00323 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99868 * 179.97438 * 7 2 1 10 10 H 1.08998 * 110.43596 * 57.46333 * 9 7 2 11 11 C 1.54888 * 110.49192 * 294.77450 * 9 7 2 12 12 C 1.54887 * 102.75109 * 203.38294 * 11 9 7 13 13 C 1.54260 * 104.19929 * 37.93682 * 12 11 9 14 14 H 1.09001 * 110.07505 * 217.08419 * 13 12 11 15 15 N 1.46504 * 110.02981 * 95.67622 * 13 12 11 16 16 C 1.38351 * 120.00034 * 87.83515 * 15 13 12 17 17 C 1.36258 * 120.25780 * 0.02562 * 16 15 13 18 18 N 1.33234 * 121.15677 * 179.97438 * 17 16 15 19 19 C 1.31245 * 121.50920 * 359.97438 * 18 17 16 20 20 C 1.40681 * 119.78800 * 0.02562 * 19 18 17 21 21 N 1.32114 * 134.34655 * 180.02562 * 20 19 18 22 22 N 1.28750 * 109.49607 * 180.02562 * 21 20 19 23 23 C 1.30940 * 110.30917 * 359.97438 * 22 21 20 24 24 N 1.35663 * 107.47697 * 0.02562 * 23 22 21 25 25 C 1.53873 * 106.59965 * 336.39326 * 13 12 11 26 26 H 0.96999 * 120.00464 * 359.97438 * 1 2 3 27 27 H 1.09008 * 110.75298 * 321.69766 * 11 9 7 28 28 H 1.09003 * 110.75678 * 85.06145 * 11 9 7 29 29 H 1.09009 * 110.48353 * 279.26268 * 12 11 9 30 30 H 1.08993 * 110.48865 * 156.62233 * 12 11 9 31 31 H 0.97003 * 120.00208 * 267.83113 * 15 13 12 32 32 H 1.07995 * 119.42381 * 0.25270 * 17 16 15 33 33 H 1.07998 * 120.10488 * 180.02562 * 19 18 17 34 34 H 1.08000 * 126.26300 * 180.02562 * 23 22 21 35 35 H 1.09000 * 110.03176 * 119.27850 * 25 13 12 36 36 H 1.08998 * 110.03249 * 240.71315 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 1 3.8924 -0.6448 0.8599 11 6 4.0532 -0.5856 -1.3185 12 6 5.4717 -1.1991 -1.4205 13 6 5.2979 -2.6423 -0.9040 14 1 6.1742 -2.9421 -0.3294 15 7 5.0995 -3.5578 -2.0304 16 6 6.1922 -4.1236 -2.6628 17 6 7.4553 -3.8333 -2.2420 18 7 8.5203 -4.3683 -2.8375 19 6 8.3973 -5.1944 -3.8500 20 6 7.1169 -5.5298 -4.3267 21 7 6.6666 -6.3065 -5.2959 22 7 5.3799 -6.2659 -5.3164 23 6 4.9352 -5.4725 -4.3745 24 7 6.0132 -4.9784 -3.7154 25 6 4.0516 -2.6390 -0.0016 26 1 -0.4851 0.8400 0.0004 27 1 3.4388 -0.8902 -2.1659 28 1 4.1062 0.5009 -1.2492 29 1 6.1710 -0.6500 -0.7899 30 1 5.8123 -1.2029 -2.4558 31 1 4.2019 -3.7674 -2.3328 32 1 7.5954 -3.1613 -1.4083 33 1 9.2762 -5.6152 -4.3156 34 1 3.8998 -5.2517 -4.1613 35 1 3.2991 -3.3186 -0.4017 36 1 4.3232 -2.9365 1.0113 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568951175.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:03 Heat of formation + Delta-G solvation = 125.224917 kcal Electronic energy + Delta-G solvation = -20608.234553 eV Core-core repulsion = 17515.254830 eV Total energy + Delta-G solvation = -3092.979722 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.86467 -39.80307 -38.26274 -35.80056 -33.83085 -32.33724 -31.20230 -29.37964 -28.83381 -27.77092 -24.76866 -24.57043 -23.58803 -22.29243 -20.35427 -19.85358 -18.81640 -18.23959 -17.34146 -16.96157 -16.66700 -16.02501 -15.50275 -15.30871 -14.82628 -14.27353 -13.73357 -13.40032 -13.07853 -12.84717 -12.64817 -12.50329 -12.01890 -11.78040 -11.50332 -11.17598 -10.98851 -10.78327 -10.55345 -10.40478 -10.23659 -10.06488 -9.98647 -9.72156 -9.63864 -9.24551 -8.71854 -7.60106 -6.24472 -4.25521 0.49410 0.87737 1.66187 2.50648 2.87147 3.14811 3.23915 3.26244 3.33735 3.92784 3.97490 4.25770 4.29397 4.57472 4.60362 4.81850 4.87427 5.04461 5.11336 5.20401 5.44304 5.57175 5.70725 5.80383 5.89404 5.97418 6.06330 6.14172 6.26869 6.28602 6.44982 6.55904 6.79830 6.83491 7.09946 7.25619 7.56299 7.61432 8.24928 8.31391 8.77132 9.37391 10.88420 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.030881 B = 0.004445 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.482590 B = 6297.922509 C = 6787.151480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.264 1.264 7 C -0.517 4.517 8 H 0.073 0.927 9 C 0.013 3.987 10 H 0.037 0.963 11 C -0.128 4.128 12 C -0.141 4.141 13 C 0.144 3.856 14 H 0.086 0.914 15 N -0.701 5.701 16 C 0.381 3.619 17 C -0.080 4.080 18 N -0.392 5.392 19 C 0.095 3.905 20 C 0.183 3.817 21 N -0.283 5.283 22 N -0.246 5.246 23 C 0.122 3.878 24 N -0.410 5.410 25 C -0.112 4.112 26 H 0.265 0.735 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.408 0.592 32 H 0.179 0.821 33 H 0.187 0.813 34 H 0.226 0.774 35 H 0.071 0.929 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.398 -6.053 -3.492 15.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.189 1.189 7 C -0.555 4.555 8 H 0.091 0.909 9 C -0.006 4.006 10 H 0.055 0.945 11 C -0.166 4.166 12 C -0.180 4.180 13 C 0.041 3.959 14 H 0.104 0.896 15 N -0.329 5.329 16 C 0.166 3.834 17 C -0.230 4.230 18 N -0.102 5.102 19 C -0.091 4.091 20 C -0.068 4.068 21 N -0.130 5.130 22 N -0.085 5.085 23 C -0.161 4.161 24 N -0.098 5.098 25 C -0.150 4.150 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.245 0.755 32 H 0.196 0.804 33 H 0.204 0.796 34 H 0.242 0.758 35 H 0.090 0.910 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.812 -6.515 -4.142 15.823 hybrid contribution -1.163 1.611 0.554 2.063 sum 12.649 -4.904 -3.588 14.033 Atomic orbital electron populations 1.69886 1.06353 1.27169 1.50170 1.24999 0.94641 0.99096 0.94200 0.86908 0.80123 0.83724 0.78391 1.20391 1.21951 1.18870 1.20993 0.88396 0.94434 1.51657 0.90900 1.19991 0.96864 0.90657 0.93128 0.94451 1.22952 0.93318 0.98965 1.01396 1.22914 0.99713 0.94725 1.00610 1.22122 1.00619 0.88220 0.84986 0.89569 1.45202 1.05420 1.47703 1.34595 1.18756 0.91740 0.88106 0.84844 1.21648 0.83488 1.10631 1.07212 1.67768 1.32076 1.04855 1.05503 1.22309 0.92130 0.98924 0.95733 1.23683 0.90378 0.97715 0.95050 1.74912 1.02176 1.19191 1.16744 1.74312 1.03381 1.14634 1.16171 1.26502 0.94465 1.00235 0.94894 1.44148 1.09934 1.32165 1.23585 1.22455 0.94002 1.00958 0.97583 0.92492 0.91493 0.93128 0.90774 0.92069 0.75465 0.80404 0.79586 0.75752 0.91021 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.88 13.96 55.43 0.77 -25.10 16 2 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 3 Si 0.88 20.11 24.65 -169.99 -4.19 15.92 16 4 H -0.28 -6.25 7.10 56.52 0.40 -5.85 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -5.67 6.47 56.52 0.37 -5.30 16 7 C -0.52 -12.91 9.04 -34.44 -0.31 -13.22 16 8 H 0.07 1.98 7.79 -52.49 -0.41 1.57 16 9 C 0.01 0.25 2.28 -90.11 -0.21 0.04 16 10 H 0.04 0.76 7.06 -51.93 -0.37 0.39 16 11 C -0.13 -2.28 5.30 -24.74 -0.13 -2.42 16 12 C -0.14 -1.89 6.54 -25.08 -0.16 -2.05 16 13 C 0.14 1.74 2.91 -66.81 -0.19 1.54 16 14 H 0.09 0.88 6.40 -51.93 -0.33 0.54 16 15 N -0.70 -7.88 5.17 -52.70 -0.27 -8.15 16 16 C 0.38 4.47 7.61 -152.81 -1.16 3.31 16 17 C -0.08 -0.92 10.30 -17.66 -0.18 -1.10 16 18 N -0.39 -4.70 10.41 -12.93 -0.13 -4.84 16 19 C 0.09 1.08 11.33 -16.88 -0.19 0.89 16 20 C 0.18 2.45 7.96 -155.93 -1.24 1.21 16 21 N -0.28 -4.27 12.30 31.15 0.38 -3.88 16 22 N -0.25 -3.63 12.20 29.79 0.36 -3.27 16 23 C 0.12 1.48 12.61 -89.44 -1.13 0.35 16 24 N -0.41 -5.15 2.98 -63.24 -0.19 -5.33 16 25 C -0.11 -1.70 6.13 -25.61 -0.16 -1.85 16 26 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.07 1.25 8.05 -51.92 -0.42 0.84 16 28 H 0.05 0.95 5.28 -51.93 -0.27 0.68 16 29 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 30 H 0.06 0.79 8.04 -51.93 -0.42 0.38 16 31 H 0.41 4.41 7.97 -40.82 -0.33 4.08 16 32 H 0.18 1.78 6.09 -52.49 -0.32 1.46 16 33 H 0.19 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.23 1.86 7.99 -52.49 -0.42 1.44 16 35 H 0.07 1.13 7.13 -51.93 -0.37 0.76 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 294.25 15.07 4.43 4.43 Total: -1.00 -30.04 294.25 -8.09 -38.13 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.09 Total: 3.56 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -5.16 Total: -11.46 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.92 Total: -50.58 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.19 Total: 15.92 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.04 -8.09 -38.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568951175.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.355 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds