Wall clock time and date at job start Mon Mar 30 2020 02:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99751 * 2 1 4 4 H 1.48504 * 109.47358 * 270.00171 * 3 2 1 5 5 H 1.48495 * 109.47128 * 30.00301 * 3 2 1 6 6 H 1.48503 * 109.47097 * 150.00275 * 3 2 1 7 7 C 1.37876 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00323 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99868 * 179.97438 * 7 2 1 10 10 H 1.08998 * 110.43596 * 57.46333 * 9 7 2 11 11 C 1.54888 * 110.49192 * 294.77450 * 9 7 2 12 12 C 1.54887 * 102.75109 * 203.38294 * 11 9 7 13 13 C 1.54260 * 104.19929 * 37.93682 * 12 11 9 14 14 H 1.09001 * 110.07505 * 217.08419 * 13 12 11 15 15 N 1.46504 * 110.02981 * 95.67622 * 13 12 11 16 16 C 1.38351 * 120.00034 * 87.83515 * 15 13 12 17 17 C 1.36258 * 120.25780 * 0.02562 * 16 15 13 18 18 N 1.33234 * 121.15677 * 179.97438 * 17 16 15 19 19 C 1.31245 * 121.50920 * 359.97438 * 18 17 16 20 20 C 1.40681 * 119.78800 * 0.02562 * 19 18 17 21 21 N 1.32114 * 134.34655 * 180.02562 * 20 19 18 22 22 N 1.28750 * 109.49607 * 180.02562 * 21 20 19 23 23 C 1.30940 * 110.30917 * 359.97438 * 22 21 20 24 24 N 1.35663 * 107.47697 * 0.02562 * 23 22 21 25 25 C 1.53873 * 106.59965 * 336.39326 * 13 12 11 26 26 H 0.96999 * 120.00464 * 359.97438 * 1 2 3 27 27 H 1.09008 * 110.75298 * 321.69766 * 11 9 7 28 28 H 1.09003 * 110.75678 * 85.06145 * 11 9 7 29 29 H 1.09009 * 110.48353 * 279.26268 * 12 11 9 30 30 H 1.08993 * 110.48865 * 156.62233 * 12 11 9 31 31 H 0.97003 * 120.00208 * 267.83113 * 15 13 12 32 32 H 1.07995 * 119.42381 * 0.25270 * 17 16 15 33 33 H 1.07998 * 120.10488 * 180.02562 * 19 18 17 34 34 H 1.08000 * 126.26300 * 180.02562 * 23 22 21 35 35 H 1.09000 * 110.03176 * 119.27850 * 25 13 12 36 36 H 1.08998 * 110.03249 * 240.71315 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 1 3.8924 -0.6448 0.8599 11 6 4.0532 -0.5856 -1.3185 12 6 5.4717 -1.1991 -1.4205 13 6 5.2979 -2.6423 -0.9040 14 1 6.1742 -2.9421 -0.3294 15 7 5.0995 -3.5578 -2.0304 16 6 6.1922 -4.1236 -2.6628 17 6 7.4553 -3.8333 -2.2420 18 7 8.5203 -4.3683 -2.8375 19 6 8.3973 -5.1944 -3.8500 20 6 7.1169 -5.5298 -4.3267 21 7 6.6666 -6.3065 -5.2959 22 7 5.3799 -6.2659 -5.3164 23 6 4.9352 -5.4725 -4.3745 24 7 6.0132 -4.9784 -3.7154 25 6 4.0516 -2.6390 -0.0016 26 1 -0.4851 0.8400 0.0004 27 1 3.4388 -0.8902 -2.1659 28 1 4.1062 0.5009 -1.2492 29 1 6.1710 -0.6500 -0.7899 30 1 5.8123 -1.2029 -2.4558 31 1 4.2019 -3.7674 -2.3328 32 1 7.5954 -3.1613 -1.4083 33 1 9.2762 -5.6152 -4.3156 34 1 3.8998 -5.2517 -4.1613 35 1 3.2991 -3.3186 -0.4017 36 1 4.3232 -2.9365 1.0113 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568951175.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:02 Heat of formation + Delta-G solvation = 107.326731 kcal Electronic energy + Delta-G solvation = -20609.010676 eV Core-core repulsion = 17515.254830 eV Total energy + Delta-G solvation = -3093.755846 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.81956 -40.77979 -39.36002 -36.85927 -35.09141 -34.02775 -32.18690 -30.47314 -30.15543 -28.93012 -25.97176 -25.64647 -24.87683 -23.26729 -21.40809 -21.24661 -19.88988 -19.22999 -18.90805 -17.96478 -17.72808 -16.94580 -16.81216 -16.50383 -15.83727 -15.74385 -14.83706 -14.75507 -14.44374 -14.09920 -13.88636 -13.56963 -13.14444 -13.04892 -12.82365 -12.65929 -12.32651 -11.97571 -11.81600 -11.75240 -11.53037 -11.33986 -11.17693 -11.09100 -11.03126 -10.70584 -10.65559 -8.49449 -8.28933 -6.32055 -0.40152 -0.05310 0.75230 1.33366 1.37244 1.46368 1.53048 1.96222 2.34187 2.44139 3.02078 3.07668 3.07999 3.47722 3.63884 3.72197 3.79153 3.80220 4.05158 4.20677 4.55363 4.61588 4.62441 4.67297 4.69577 4.90212 4.94442 4.98282 5.08626 5.13997 5.25580 5.38459 5.46255 5.65330 5.73354 5.85324 6.19857 6.31326 6.73194 6.76470 7.26386 7.34263 8.87701 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.030881 B = 0.004445 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.482590 B = 6297.922509 C = 6787.151480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.011 3.989 3 Si 0.939 3.061 4 H -0.272 1.272 5 H -0.303 1.303 6 H -0.236 1.236 7 C -0.511 4.511 8 H 0.034 0.966 9 C 0.004 3.996 10 H 0.038 0.962 11 C -0.130 4.130 12 C -0.129 4.129 13 C 0.157 3.843 14 H 0.120 0.880 15 N -0.699 5.699 16 C 0.378 3.622 17 C -0.078 4.078 18 N -0.398 5.398 19 C 0.097 3.903 20 C 0.175 3.825 21 N -0.313 5.313 22 N -0.279 5.279 23 C 0.129 3.871 24 N -0.413 5.413 25 C -0.107 4.107 26 H 0.263 0.737 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.409 0.591 32 H 0.200 0.800 33 H 0.213 0.787 34 H 0.256 0.744 35 H 0.059 0.941 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.433 -5.612 -3.046 17.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.186 4.186 3 Si 0.765 3.235 4 H -0.198 1.198 5 H -0.230 1.230 6 H -0.159 1.159 7 C -0.549 4.549 8 H 0.052 0.948 9 C -0.015 4.015 10 H 0.057 0.943 11 C -0.167 4.167 12 C -0.168 4.168 13 C 0.054 3.946 14 H 0.138 0.862 15 N -0.328 5.328 16 C 0.163 3.837 17 C -0.228 4.228 18 N -0.109 5.109 19 C -0.088 4.088 20 C -0.077 4.077 21 N -0.160 5.160 22 N -0.117 5.117 23 C -0.154 4.154 24 N -0.101 5.101 25 C -0.145 4.145 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.246 0.754 32 H 0.216 0.784 33 H 0.230 0.770 34 H 0.272 0.728 35 H 0.077 0.923 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.887 -6.103 -3.709 18.335 hybrid contribution -2.159 1.397 0.440 2.609 sum 14.728 -4.705 -3.269 15.803 Atomic orbital electron populations 1.70055 1.08410 1.27840 1.53241 1.25864 0.95232 1.03017 0.94489 0.85946 0.79772 0.78992 0.78773 1.19761 1.23027 1.15875 1.21419 0.91640 0.92609 1.49203 0.94772 1.19992 0.93113 0.94144 0.94244 0.94343 1.22798 0.96136 0.98536 0.99275 1.22867 0.96896 0.95101 1.01929 1.21968 0.99985 0.87896 0.84787 0.86191 1.45079 1.05471 1.47672 1.34538 1.18794 0.91907 0.88211 0.84793 1.22047 0.83141 1.10311 1.07305 1.67849 1.32235 1.05089 1.05688 1.22798 0.92224 0.98393 0.95380 1.24004 0.91247 0.97573 0.94882 1.74826 1.02527 1.20567 1.18073 1.74239 1.03571 1.16182 1.17721 1.27088 0.95569 0.98966 0.93824 1.44243 1.09828 1.32272 1.23805 1.22318 0.95134 0.97606 0.99453 0.92841 0.93313 0.93967 0.88401 0.91133 0.75355 0.78382 0.77028 0.72836 0.92257 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.13 13.96 21.45 0.30 -56.84 16 2 C 0.01 0.57 5.46 84.66 0.46 1.04 16 3 Si 0.94 41.28 24.65 68.60 1.69 42.97 16 4 H -0.27 -11.58 7.10 99.48 0.71 -10.87 16 5 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.24 -9.17 6.47 99.48 0.64 -8.52 16 7 C -0.51 -25.91 9.04 25.60 0.23 -25.68 16 8 H 0.03 1.94 7.79 -2.91 -0.02 1.91 16 9 C 0.00 0.15 2.28 -10.46 -0.02 0.13 16 10 H 0.04 1.45 7.06 -2.39 -0.02 1.44 16 11 C -0.13 -4.29 5.30 31.88 0.17 -4.12 16 12 C -0.13 -2.89 6.54 31.67 0.21 -2.68 16 13 C 0.16 3.13 2.91 45.71 0.13 3.26 16 14 H 0.12 1.71 6.40 -2.39 -0.02 1.70 16 15 N -0.70 -13.46 5.17 -320.65 -1.66 -15.12 16 16 C 0.38 7.64 7.61 131.25 1.00 8.64 16 17 C -0.08 -1.49 10.30 84.02 0.87 -0.62 16 18 N -0.40 -8.20 10.41 -194.83 -2.03 -10.23 16 19 C 0.10 1.96 11.33 85.38 0.97 2.93 16 20 C 0.18 4.39 7.96 133.97 1.07 5.46 16 21 N -0.31 -9.24 12.30 -55.37 -0.68 -9.92 16 22 N -0.28 -8.08 12.20 -59.66 -0.73 -8.81 16 23 C 0.13 2.94 12.61 179.94 2.27 5.21 16 24 N -0.41 -9.51 2.98 -354.01 -1.05 -10.56 16 25 C -0.11 -2.97 6.13 31.32 0.19 -2.78 16 26 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 27 H 0.05 1.77 8.05 -2.38 -0.02 1.75 16 28 H 0.04 1.46 5.28 -2.39 -0.01 1.45 16 29 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.07 1.51 8.04 -2.39 -0.02 1.49 16 31 H 0.41 7.89 7.97 -92.71 -0.74 7.15 16 32 H 0.20 2.86 6.09 -2.91 -0.02 2.85 16 33 H 0.21 2.92 8.06 -2.91 -0.02 2.89 16 34 H 0.26 3.76 7.99 -2.91 -0.02 3.74 16 35 H 0.06 1.80 7.13 -2.39 -0.02 1.78 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -67.71 294.25 3.70 -64.01 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.32 Total: 13.72 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 7.54 Total: -9.22 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -5.85 Total: -111.48 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.69 Total: 42.97 kcal Total: -67.71 3.70 -64.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568951175.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.339 kcal (2) G-P(sol) polarization free energy of solvation -67.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds